Clone Name | bastl14e02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 314 gaagaggttgctctctgtgcttgc 337 |||||||||||||||||||||||| Sbjct: 19967840 gaagaggttgctctctgtgcttgc 19967817 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 cctcgcatcgtcgtcttcctcg 53 |||||||||||||||||||||| Sbjct: 471113 cctcgcatcgtcgtcttcctcg 471092 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atgctcggggcctcgaggcg 154 |||||||||||||||||||| Sbjct: 19968374 atgctcggggcctcgaggcg 19968355
>dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C12, full insert sequence Length = 2803 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 314 gaagaggttgctctctgtgcttgc 337 |||||||||||||||||||||||| Sbjct: 313 gaagaggttgctctctgtgcttgc 336 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atgctcggggcctcgaggcg 154 |||||||||||||||||||| Sbjct: 137 atgctcggggcctcgaggcg 156
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 314 gaagaggttgctctctgtgcttgc 337 |||||||||||||||||||||||| Sbjct: 19894054 gaagaggttgctctctgtgcttgc 19894031 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 cctcgcatcgtcgtcttcctcg 53 |||||||||||||||||||||| Sbjct: 471113 cctcgcatcgtcgtcttcctcg 471092 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atgctcggggcctcgaggcg 154 |||||||||||||||||||| Sbjct: 19894588 atgctcggggcctcgaggcg 19894569
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 314 gaagaggttgctctctgtgcttgc 337 |||||||||||||||||||||||| Sbjct: 59420 gaagaggttgctctctgtgcttgc 59443 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atgctcggggcctcgaggcg 154 |||||||||||||||||||| Sbjct: 58886 atgctcggggcctcgaggcg 58905
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 32 cctcgcatcgtcgtcttcctcg 53 |||||||||||||||||||||| Sbjct: 75659 cctcgcatcgtcgtcttcctcg 75680
>emb|AL133215.17| Human DNA sequence from clone RP11-108L7 on chromosome 10 Contains the 3' end of the C10orf6 gene for chromosome 10 open reading frame 6, the SEMA4G gene for sema domain immunoglobulin domain (Ig) transmembrane domain (TM) and short cytoplasmic domain (semaphorin) 4G, the MRPL43 gene for mitochondrial ribosomal protein L43, the C10orf2 gene for chromosome 10 open reading frame 2, the gene for a novel protein (KIAA1813) (LAPSER1), a novel gene, the gene for a novel protein (FLJ23209 FLJ00011), the gene for a novel tricarboxylate carrier domain containing protein (FLJ34185 FLJ35692), the gene for a novel kazal-type serine protease inhibitor domain and immunoglobulin domain containing protein (FKSG28) (FKSG4), the 3' end of a novel gene and six CpG islands, complete sequence Length = 181086 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tgggaggagaaccagcagagcgcag 129 |||||||||||||||||||| |||| Sbjct: 99620 tgggaggagaaccagcagagggcag 99644
>gb|AC154722.2| Mus musculus BAC clone RP24-371J2 from chromosome 9, complete sequence Length = 186951 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagggaagaggttgctctc 328 |||||||||||||||||||| Sbjct: 56974 ggagggaagaggttgctctc 56993
>gb|AC163289.4| Mus musculus BAC clone RP23-269K2 from chromosome 9, complete sequence Length = 202378 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagggaagaggttgctctc 328 |||||||||||||||||||| Sbjct: 136131 ggagggaagaggttgctctc 136150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,392,631 Number of Sequences: 3902068 Number of extensions: 1392631 Number of successful extensions: 28185 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28104 Number of HSP's gapped (non-prelim): 81 length of query: 339 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 317 effective length of database: 17,147,199,772 effective search space: 5435662327724 effective search space used: 5435662327724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)