ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
2dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.018
4emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118... 48 0.018
5emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.29
6emb|AL133215.17| Human DNA sequence from clone RP11-108L7 on chr... 42 1.1
7gb|AC154722.2| Mus musculus BAC clone RP24-371J2 from chromosome... 40 4.5
8gb|AC163289.4| Mus musculus BAC clone RP23-269K2 from chromosome... 40 4.5

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 314      gaagaggttgctctctgtgcttgc 337
                ||||||||||||||||||||||||
Sbjct: 19967840 gaagaggttgctctctgtgcttgc 19967817



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     cctcgcatcgtcgtcttcctcg 53
              ||||||||||||||||||||||
Sbjct: 471113 cctcgcatcgtcgtcttcctcg 471092



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 135      atgctcggggcctcgaggcg 154
                ||||||||||||||||||||
Sbjct: 19968374 atgctcggggcctcgaggcg 19968355



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>dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C12, full
           insert sequence
          Length = 2803

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 314 gaagaggttgctctctgtgcttgc 337
           ||||||||||||||||||||||||
Sbjct: 313 gaagaggttgctctctgtgcttgc 336



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 atgctcggggcctcgaggcg 154
           ||||||||||||||||||||
Sbjct: 137 atgctcggggcctcgaggcg 156



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 314      gaagaggttgctctctgtgcttgc 337
                ||||||||||||||||||||||||
Sbjct: 19894054 gaagaggttgctctctgtgcttgc 19894031



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     cctcgcatcgtcgtcttcctcg 53
              ||||||||||||||||||||||
Sbjct: 471113 cctcgcatcgtcgtcttcctcg 471092



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 135      atgctcggggcctcgaggcg 154
                ||||||||||||||||||||
Sbjct: 19894588 atgctcggggcctcgaggcg 19894569



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>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 165433

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 314   gaagaggttgctctctgtgcttgc 337
             ||||||||||||||||||||||||
Sbjct: 59420 gaagaggttgctctctgtgcttgc 59443



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   atgctcggggcctcgaggcg 154
             ||||||||||||||||||||
Sbjct: 58886 atgctcggggcctcgaggcg 58905



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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 32    cctcgcatcgtcgtcttcctcg 53
             ||||||||||||||||||||||
Sbjct: 75659 cctcgcatcgtcgtcttcctcg 75680



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>emb|AL133215.17| Human DNA sequence from clone RP11-108L7 on chromosome 10 Contains the
             3' end of the C10orf6 gene for chromosome 10 open reading
             frame 6, the SEMA4G gene for sema domain immunoglobulin
             domain (Ig) transmembrane domain (TM) and short
             cytoplasmic domain (semaphorin) 4G, the MRPL43 gene for
             mitochondrial ribosomal protein L43, the C10orf2 gene for
             chromosome 10 open reading frame 2, the gene for a novel
             protein (KIAA1813) (LAPSER1), a novel gene, the gene for a
             novel protein (FLJ23209 FLJ00011), the gene for a novel
             tricarboxylate carrier domain containing protein (FLJ34185
             FLJ35692), the gene for a novel kazal-type serine protease
             inhibitor domain and immunoglobulin domain containing
             protein (FKSG28) (FKSG4), the 3' end of a novel gene and
             six CpG islands, complete sequence
          Length = 181086

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 105   tgggaggagaaccagcagagcgcag 129
             |||||||||||||||||||| ||||
Sbjct: 99620 tgggaggagaaccagcagagggcag 99644



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>gb|AC154722.2| Mus musculus BAC clone RP24-371J2 from chromosome 9, complete sequence
          Length = 186951

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   ggagggaagaggttgctctc 328
             ||||||||||||||||||||
Sbjct: 56974 ggagggaagaggttgctctc 56993



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>gb|AC163289.4| Mus musculus BAC clone RP23-269K2 from chromosome 9, complete sequence
          Length = 202378

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    ggagggaagaggttgctctc 328
              ||||||||||||||||||||
Sbjct: 136131 ggagggaagaggttgctctc 136150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,392,631
Number of Sequences: 3902068
Number of extensions: 1392631
Number of successful extensions: 28185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28104
Number of HSP's gapped (non-prelim): 81
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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