ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478167.1| Oryza sativa (japonica cultivar-group), mRNA 355 7e-95
2dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 355 7e-95
3gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CB... 339 4e-90
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
5dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
6ref|NM_196150.1| Oryza sativa (japonica cultivar-group) putative... 66 9e-08
7gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar N... 66 9e-08
8gb|AC079935.3| Genomic sequence for Oryza sativa (japonica culti... 66 9e-08
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
10dbj|AK105116.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
11dbj|AK101479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 66 9e-08
13gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, co... 48 0.022
14gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, comp... 44 0.35
15ref|XM_959467.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
16ref|XM_330589.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
17ref|XM_388606.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 42 1.4
18emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in... 42 1.4
19emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 ... 42 1.4
20gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.4
21gb|BC107772.1| Homo sapiens cDNA clone MGC:104216 IMAGE:6451988,... 40 5.4
22gb|BC052105.1| Danio rerio zgc:56402, mRNA (cDNA clone MGC:56402... 40 5.4
23gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 5.4
24gb|BC068996.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 5.4
25gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosom... 40 5.4
26gb|BC035748.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 5.4
27gb|BC050594.2| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 5.4
28gb|BC058511.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 5.4
29ref|XM_646092.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 5.4
30gb|BC026028.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 5.4
31emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on ch... 40 5.4
32emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chr... 40 5.4
33gb|AC105288.3| Homo sapiens BAC clone RP11-554F9 from 4, complet... 40 5.4
34ref|XM_943989.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 5.4
35gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, co... 40 5.4
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
37dbj|AB219939.1| Lycopersicon esculentum LeHSP110/ClpB mRNA for h... 40 5.4
38ref|NM_200324.1| Danio rerio zgc:56402 (zgc:56402), mRNA 40 5.4
39gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosom... 40 5.4
40dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
41emb|BX666064.10| Zebrafish DNA sequence from clone DKEY-6N3 in l... 40 5.4
42gb|AC005971.5|AC005971 Homo sapiens chromosome 17, clone hRPK.65... 40 5.4
43ref|NM_006311.2| Homo sapiens nuclear receptor co-repressor 1 (N... 40 5.4
44gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 5.4
45gb|AF044209.1|AF044209 Homo sapiens nuclear receptor co-represso... 40 5.4
46emb|AJ009616.3|HSAJ9616 Homo sapiens chromosome 17 sequence from... 40 5.4 
>ref|XM_478167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3174

 Score =  355 bits (179), Expect = 7e-95
 Identities = 305/347 (87%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggacccgctcctacgctccgagatccacggcttcatcacctacgcagacttgaacttcg 118
           ||||||||||| |  |||||||||||||||| ||| |||| ||| ||||||||||||  |
Sbjct: 70  gggacccgctcgtcggctccgagatccacggtttcctcacttacccagacttgaactatg 129

                                                                       
Query: 119 agaagctgaaagcagaggccgcgtcgcgctggttccggccgaatgagatctacgcggtcc 178
           ||||||||   || ||||| ||| |||| ||||||||||| ||||||||||||||| |  
Sbjct: 130 agaagctggtggcggaggcggcggcgcggtggttccggcctaatgagatctacgcgatat 189

                                                                       
Query: 179 tggcgaaccacgagaggttcaaggtccatgcacagcccattgacaagcccgtgagtggta 238
           |||||||||||| |||||||||| |||| ||||| ||  | ||||||||||||||||| |
Sbjct: 190 tggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaagcccgtgagtggaa 249

                                                                       
Query: 239 ctattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccataattgga 298
           || |||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 250 ctgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccataattgga 309

                                                                       
Query: 299 agaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaattaaagattggtaatg 358
           | ||||||||||||||||  || ||||||||||| ||||||||||||||||||||||| |
Sbjct: 310 aaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaattaaagattggtaacg 369

                                                          
Query: 359 aagagagggttcatgtctattatgctcgaggtgaggataatccaaat 405
           |||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 370 aagaaagggttcatgtctattatgctcgaggtgaagatgatccaaat 416
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>dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E17, full
           insert sequence
          Length = 3174

 Score =  355 bits (179), Expect = 7e-95
 Identities = 305/347 (87%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggacccgctcctacgctccgagatccacggcttcatcacctacgcagacttgaacttcg 118
           ||||||||||| |  |||||||||||||||| ||| |||| ||| ||||||||||||  |
Sbjct: 70  gggacccgctcgtcggctccgagatccacggtttcctcacttacccagacttgaactatg 129

                                                                       
Query: 119 agaagctgaaagcagaggccgcgtcgcgctggttccggccgaatgagatctacgcggtcc 178
           ||||||||   || ||||| ||| |||| ||||||||||| ||||||||||||||| |  
Sbjct: 130 agaagctggtggcggaggcggcggcgcggtggttccggcctaatgagatctacgcgatat 189

                                                                       
Query: 179 tggcgaaccacgagaggttcaaggtccatgcacagcccattgacaagcccgtgagtggta 238
           |||||||||||| |||||||||| |||| ||||| ||  | ||||||||||||||||| |
Sbjct: 190 tggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaagcccgtgagtggaa 249

                                                                       
Query: 239 ctattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccataattgga 298
           || |||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 250 ctgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccataattgga 309

                                                                       
Query: 299 agaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaattaaagattggtaatg 358
           | ||||||||||||||||  || ||||||||||| ||||||||||||||||||||||| |
Sbjct: 310 aaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaattaaagattggtaacg 369

                                                          
Query: 359 aagagagggttcatgtctattatgctcgaggtgaggataatccaaat 405
           |||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 370 aagaaagggttcatgtctattatgctcgaggtgaagatgatccaaat 416
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>gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CBT) mRNA, complete
           cds
          Length = 3134

 Score =  339 bits (171), Expect = 4e-90
 Identities = 303/347 (87%)
 Strand = Plus / Plus

                                                                       
Query: 59  gggacccgctcctacgctccgagatccacggcttcatcacctacgcagacttgaacttcg 118
           ||||||||||| |  |||||||||||||||| ||| |||| ||| ||||||||||||  |
Sbjct: 46  gggacccgctcgtcggctccgagatccacggtttcctcacttacccagacttgaactatg 105

                                                                       
Query: 119 agaagctgaaagcagaggccgcgtcgcgctggttccggccgaatgagatctacgcggtcc 178
           | ||||||   || ||||| ||| |||| ||||||||||| ||||||||||||||| |  
Sbjct: 106 ataagctggtggcggaggcggcggcgcggtggttccggcctaatgagatctacgcgatat 165

                                                                       
Query: 179 tggcgaaccacgagaggttcaaggtccatgcacagcccattgacaagcccgtgagtggta 238
           |||||||||||| |||||||||| |||| ||||| ||  | ||||||||||||||||| |
Sbjct: 166 tggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaagcccgtgagtggaa 225

                                                                       
Query: 239 ctattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccataattgga 298
           || |||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 226 ctgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccataattgga 285

                                                                       
Query: 299 agaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaattaaagattggtaatg 358
           | ||||||||||||||||  || ||||||||||| ||||||||||||||||||||||| |
Sbjct: 286 aaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaattaaagattggtaacg 345

                                                          
Query: 359 aagagagggttcatgtctattatgctcgaggtgaggataatccaaat 405
           |||| |||||||||||||||||||||||||||||  || ||||||||
Sbjct: 346 aagaaagggttcatgtctattatgctcgaggtgaaaatgatccaaat 392
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  143 bits (72), Expect = 5e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                            
Query: 233      gtggtactattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccata 292
                |||| ||| |||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct: 18158591 gtggaactgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccata 18158532

                                                                        
Query: 293      attggaagaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaattaaag 348
                ||||||| ||||||||||||||||  || ||||||||||| |||||||||||||||
Sbjct: 18158531 attggaaaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaattaaag 18158476



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                            
Query: 105      agacttgaacttcgagaagctgaaagcagaggccgcgtcgcgctggttccggccgaatga 164
                |||||||||||  |||||||||   || ||||| ||| |||| ||||||||||| |||||
Sbjct: 18163779 agacttgaactatgagaagctggtggcggaggcggcggcgcggtggttccggcctaatga 18163720

                                                                            
Query: 165      gatctacgcggtcctggcgaaccacgagaggttcaaggtccatgcacagcccattgacaa 224
                |||||||||| |  |||||||||||| |||||||||| |||| ||||| ||  | |||||
Sbjct: 18163719 gatctacgcgatattggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaa 18163660

                          
Query: 225      gcccgtgagt 234
                ||||||||||
Sbjct: 18163659 gcccgtgagt 18163650



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                           
Query: 347      agattggtaatgaagagagggttcatgtctattatgctcgaggtgaggataatccaaat 405
                |||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 18158391 agattggtaacgaagaaagggttcatgtctattatgctcgaggtgaagatgatccaaat 18158333



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 59       gggacccgctcctacgctccgagatccacggcttcatcac 98
                ||||||||||| |  |||||||||||||||| ||| ||||
Sbjct: 18164461 gggacccgctcgtcggctccgagatccacggtttcctcac 18164422
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>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0477A12
          Length = 138141

 Score =  143 bits (72), Expect = 5e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                         
Query: 233   gtggtactattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccata 292
             |||| ||| |||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct: 93897 gtggaactgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccata 93838

                                                                     
Query: 293   attggaagaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaattaaag 348
             ||||||| ||||||||||||||||  || ||||||||||| |||||||||||||||
Sbjct: 93837 attggaaaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaattaaag 93782



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                         
Query: 105   agacttgaacttcgagaagctgaaagcagaggccgcgtcgcgctggttccggccgaatga 164
             |||||||||||  |||||||||   || ||||| ||| |||| ||||||||||| |||||
Sbjct: 99085 agacttgaactatgagaagctggtggcggaggcggcggcgcggtggttccggcctaatga 99026

                                                                         
Query: 165   gatctacgcggtcctggcgaaccacgagaggttcaaggtccatgcacagcccattgacaa 224
             |||||||||| |  |||||||||||| |||||||||| |||| ||||| ||  | |||||
Sbjct: 99025 gatctacgcgatattggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaa 98966

                       
Query: 225   gcccgtgagt 234
             ||||||||||
Sbjct: 98965 gcccgtgagt 98956



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 347   agattggtaatgaagagagggttcatgtctattatgctcgaggtgaggataatccaaat 405
             |||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 93697 agattggtaacgaagaaagggttcatgtctattatgctcgaggtgaagatgatccaaat 93639



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 59    gggacccgctcctacgctccgagatccacggcttcatcac 98
             ||||||||||| |  |||||||||||||||| ||| ||||
Sbjct: 99767 gggacccgctcgtcggctccgagatccacggtttcctcac 99728
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>ref|NM_196150.1| Oryza sativa (japonica cultivar-group) putative calmodulin binding
           protein similar to ER66 (OSJNBa0091J06.19), mRNA
          Length = 3117

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
           ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 209 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 268

                    
Query: 332 cgcatgaaa 340
           | |||||||
Sbjct: 269 cacatgaaa 277
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>gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
              OSJNBa0091J06 from chromosome 10, complete sequence
          Length = 141911

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                          
Query: 272    actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
              ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 115048 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 115107

                       
Query: 332    cgcatgaaa 340
              | |||||||
Sbjct: 115108 cacatgaaa 115116
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>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare clone OSJNBa0095C06, from Chromosome 10,
            complete sequence
          Length = 156159

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 272  actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
            ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 5970 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 6029

                     
Query: 332  cgcatgaaa 340
            | |||||||
Sbjct: 6030 cacatgaaa 6038
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 272      actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
                ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 11421977 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 11422036

                         
Query: 332      cgcatgaaa 340
                | |||||||
Sbjct: 11422037 cacatgaaa 11422045
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>dbj|AK105116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H10, full
           insert sequence
          Length = 3510

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
           ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 393 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 452

                    
Query: 332 cgcatgaaa 340
           | |||||||
Sbjct: 453 cacatgaaa 461
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>dbj|AK101479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041A20, full
           insert sequence
          Length = 3514

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
           ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 398 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 457

                    
Query: 332 cgcatgaaa 340
           | |||||||
Sbjct: 458 cacatgaaa 466
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 272      actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 331
                ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 11428417 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 11428476

                         
Query: 332      cgcatgaaa 340
                | |||||||
Sbjct: 11428477 cacatgaaa 11428485
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>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence
          Length = 224141

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 193    aggttcaaggtccatgcacagccc 216
              ||||||||||||||||||||||||
Sbjct: 142694 aggttcaaggtccatgcacagccc 142671
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>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence
          Length = 160358

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 336    tgaaaaattaaagattggtaatgaag 361
              |||||||||||||||||| |||||||
Sbjct: 130823 tgaaaaattaaagattggaaatgaag 130798
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>ref|XM_959467.1| Neurospora crassa OR74A hypothetical protein (NCU03154.1) partial
           mRNA
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 8   aagtggaagcagcagccgcgg 28
           |||||||||||||||||||||
Sbjct: 411 aagtggaagcagcagccgcgg 431
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>ref|XM_330589.1| Neurospora crassa OR74A hypothetical protein (NCU03154.1) partial
           mRNA
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 8   aagtggaagcagcagccgcgg 28
           |||||||||||||||||||||
Sbjct: 411 aagtggaagcagcagccgcgg 431
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>ref|XM_388606.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08430.1)
           partial mRNA
          Length = 2286

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 ttcgagaagctgaaagcagaggccg 139
           |||||||||| ||||||||||||||
Sbjct: 76  ttcgagaagcagaaagcagaggccg 100
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>emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in linkage group 19,
              complete sequence
          Length = 237649

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 332    cgcatgaaaaattaaagattg 352
              |||||||||||||||||||||
Sbjct: 179307 cgcatgaaaaattaaagattg 179287
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>emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 in linkage group 11,
              complete sequence
          Length = 231587

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    cgcatgaaaaattaaagattg 352
              |||||||||||||||||||||
Sbjct: 124373 cgcatgaaaaattaaagattg 124393
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 12      ggaagcagcagccgcggcggc 32
               |||||||||||||||||||||
Sbjct: 2423723 ggaagcagcagccgcggcggc 2423743
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>gb|BC107772.1| Homo sapiens cDNA clone MGC:104216 IMAGE:6451988, complete cds
          Length = 1065

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 40 gaagcagcagccgcggcggc 59
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>gb|BC052105.1| Danio rerio zgc:56402, mRNA (cDNA clone MGC:56402 IMAGE:5605173),
           complete cds
          Length = 1819

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 tgaacttcgagaagctgaaa 129
           ||||||||||||||||||||
Sbjct: 694 tgaacttcgagaagctgaaa 713
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     taatgaagagagggttcatg 373
               ||||||||||||||||||||
Sbjct: 1464670 taatgaagagagggttcatg 1464651
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>gb|BC068996.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:5474358), partial cds
          Length = 1808

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 24 gaagcagcagccgcggcggc 43
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>gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosome 15, complete sequence
          Length = 229480

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    cataattggaagaaaaagaa 308
              ||||||||||||||||||||
Sbjct: 103499 cataattggaagaaaaagaa 103518
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>gb|BC035748.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:5749816), with apparent retained intron
          Length = 1850

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 6  gaagcagcagccgcggcggc 25
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>gb|BC050594.2| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:6024800), partial cds
          Length = 1891

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 24 gaagcagcagccgcggcggc 43
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>gb|BC058511.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:5190073), partial cds
          Length = 1850

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 29 gaagcagcagccgcggcggc 48
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>ref|XM_646092.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (178.t00008) partial mRNA
          Length = 1419

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 attaaagattggtaatgaag 361
           ||||||||||||||||||||
Sbjct: 837 attaaagattggtaatgaag 818
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>gb|BC026028.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:3836580), containing frame-shift errors
          Length = 1966

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 7  gaagcagcagccgcggcggc 26
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>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete
              sequence
          Length = 198743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ggaaagtggaagcagcagcc 24
              ||||||||||||||||||||
Sbjct: 109750 ggaaagtggaagcagcagcc 109769
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>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
             sequence
          Length = 160298

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   tggaagaaaaagaaggatggcaaa 318
             |||||||| |||||||||||||||
Sbjct: 85086 tggaagaacaagaaggatggcaaa 85109
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>gb|AC105288.3| Homo sapiens BAC clone RP11-554F9 from 4, complete sequence
          Length = 142915

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     aagcagcagccgcggcggct 33
              ||||||||||||||||||||
Sbjct: 123682 aagcagcagccgcggcggct 123663
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>ref|XM_943989.1| PREDICTED: Homo sapiens hypothetical protein LOC649947 (LOC649947),
           mRNA
          Length = 486

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  gaagcagcagccgcggcggc 32
           ||||||||||||||||||||
Sbjct: 421 gaagcagcagccgcggcggc 402
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>gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, complete sequence
          Length = 181991

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ggaaagtggaagcagcagcc 24
             ||||||||||||||||||||
Sbjct: 49907 ggaaagtggaagcagcagcc 49926
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 301      aaaaagaaggatggcaaaac 320
                ||||||||||||||||||||
Sbjct: 19935504 aaaaagaaggatggcaaaac 19935523
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>dbj|AB219939.1| Lycopersicon esculentum LeHSP110/ClpB mRNA for heat shock protein,
           complete cds
          Length = 3144

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 292 aattggaagaaaaagaaggatggcaaaactgt 323
           ||||||||||| ||||||||  ||||||||||
Sbjct: 85  aattggaagaagaagaaggaacgcaaaactgt 54
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>ref|NM_200324.1| Danio rerio zgc:56402 (zgc:56402), mRNA
          Length = 1819

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 tgaacttcgagaagctgaaa 129
           ||||||||||||||||||||
Sbjct: 694 tgaacttcgagaagctgaaa 713
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>gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosome 15, complete
            sequence
          Length = 210091

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  cataattggaagaaaaagaa 308
            ||||||||||||||||||||
Sbjct: 6088 cataattggaagaaaaagaa 6069
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>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1018E06
          Length = 178499

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   aaaaagaaggatggcaaaac 320
             ||||||||||||||||||||
Sbjct: 73844 aaaaagaaggatggcaaaac 73863
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>emb|BX666064.10| Zebrafish DNA sequence from clone DKEY-6N3 in linkage group 22, complete
              sequence
          Length = 156234

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tgaacttcgagaagctgaaa 129
              ||||||||||||||||||||
Sbjct: 143199 tgaacttcgagaagctgaaa 143180
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>gb|AC005971.5|AC005971 Homo sapiens chromosome 17, clone hRPK.651_L_9, complete sequence
          Length = 192307

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     gaagcagcagccgcggcggc 32
              ||||||||||||||||||||
Sbjct: 144207 gaagcagcagccgcggcggc 144226
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>ref|NM_006311.2| Homo sapiens nuclear receptor co-repressor 1 (NCOR1), mRNA
          Length = 7940

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 23 gaagcagcagccgcggcggc 42
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 326     aagaagcgcatgaaaaatta 345
               ||||||||||||||||||||
Sbjct: 3248085 aagaagcgcatgaaaaatta 3248104
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>gb|AF044209.1|AF044209 Homo sapiens nuclear receptor co-repressor N-CoR mRNA, complete
          cds
          Length = 7940

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 gaagcagcagccgcggcggc 32
          ||||||||||||||||||||
Sbjct: 23 gaagcagcagccgcggcggc 42
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>emb|AJ009616.3|HSAJ9616 Homo sapiens chromosome 17 sequence from PAC RP1-188B3 region
             D17S842-D17S953 map 17p11.2, complete sequence
          Length = 81514

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gaagcagcagccgcggcggc 32
             ||||||||||||||||||||
Sbjct: 17921 gaagcagcagccgcggcggc 17940


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,063,545
Number of Sequences: 3902068
Number of extensions: 4063545
Number of successful extensions: 115007
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114759
Number of HSP's gapped (non-prelim): 248
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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