Clone Name | bastl14d09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E09, full insert sequence Length = 3025 Score = 224 bits (113), Expect = 2e-55 Identities = 226/263 (85%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 133 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 189 |||||||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct: 192 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 251 Query: 190 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 249 ||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| || Sbjct: 252 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 311 Query: 250 ctcggcgatctgggcctcatccagttcaaagacctcaacgcagacaaaagcccgtttcaa 309 |||||||| || |||||| ||||||| |||||||| ||||||||||| || || |||||| Sbjct: 312 ctcggcgaactcggcctcctccagttgaaagaccttaacgcagacaagagtccttttcaa 371 Query: 310 cgcacctacgctgcacagatcaaaaggtgtgctgaaatgtcccgcaagttgagatttttt 369 || || || ||||| ||||| |||||||||| ||||||| | ||||| || |||||||| Sbjct: 372 cgaacatatgctgcccagataaaaaggtgtggtgaaatggctcgcaaattaagatttttc 431 Query: 370 aaggaacagatgtcgaaagctgg 392 || ||||| ||||| |||||||| Sbjct: 432 aaagaacaaatgtccaaagctgg 454
>dbj|AK101151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027C12, full insert sequence Length = 3018 Score = 224 bits (113), Expect = 2e-55 Identities = 226/263 (85%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 133 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 189 |||||||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct: 185 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 244 Query: 190 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 249 ||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| || Sbjct: 245 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 304 Query: 250 ctcggcgatctgggcctcatccagttcaaagacctcaacgcagacaaaagcccgtttcaa 309 |||||||| || |||||| ||||||| |||||||| ||||||||||| || || |||||| Sbjct: 305 ctcggcgaactcggcctcctccagttgaaagaccttaacgcagacaagagtccttttcaa 364 Query: 310 cgcacctacgctgcacagatcaaaaggtgtgctgaaatgtcccgcaagttgagatttttt 369 || || || ||||| ||||| |||||||||| ||||||| | ||||| || |||||||| Sbjct: 365 cgaacatatgctgcccagataaaaaggtgtggtgaaatggctcgcaaattaagatttttc 424 Query: 370 aaggaacagatgtcgaaagctgg 392 || ||||| ||||| |||||||| Sbjct: 425 aaagaacaaatgtccaaagctgg 447
>ref|NM_195204.1| Oryza sativa (japonica cultivar-group) putative proton pump (OSJNBa0029P16.14), mRNA Length = 2352 Score = 222 bits (112), Expect = 7e-55 Identities = 217/252 (86%) Strand = Plus / Plus Query: 140 cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 199 ||||| |||| || || |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 5 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 64 Query: 200 tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 259 | |||||||||| ||||| | |||||||||||||||||||||||| |||||||||| | Sbjct: 65 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 124 Query: 260 tgggcctcatccagttcaaagacctcaacgcagacaaaagcccgtttcaacgcacctacg 319 | |||||| |||||||||||||||| || || ||||||||||| || || || || || | Sbjct: 125 tcggcctcctccagttcaaagaccttaatgccgacaaaagcccattccagcggacttatg 184 Query: 320 ctgcacagatcaaaaggtgtgctgaaatgtcccgcaagttgagattttttaaggaacaga 379 || | |||||||| ||||||| ||||||| | ||||||||| | ||||||| |||||| | Sbjct: 185 cttcccagatcaagaggtgtggtgaaatggctcgcaagttgcggttttttagggaacaaa 244 Query: 380 tgtcgaaagctg 391 |||| ||||||| Sbjct: 245 tgtcaaaagctg 256
>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence Length = 173644 Score = 165 bits (83), Expect = 1e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 140 cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 199 ||||| |||| || || |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 112066 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 112007 Query: 200 tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 259 | |||||||||| ||||| | |||||||||||||||||||||||| |||||||||| | Sbjct: 112006 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 111947 Query: 260 tgggcctcatccagttcaaagac 282 | |||||| |||||||||||||| Sbjct: 111946 tcggcctcctccagttcaaagac 111924
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 165 bits (83), Expect = 1e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 140 cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 199 ||||| |||| || || |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 5431582 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 5431641 Query: 200 tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 259 | |||||||||| ||||| | |||||||||||||||||||||||| |||||||||| | Sbjct: 5431642 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 5431701 Query: 260 tgggcctcatccagttcaaagac 282 | |||||| |||||||||||||| Sbjct: 5431702 tcggcctcctccagttcaaagac 5431724
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 165 bits (83), Expect = 1e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 140 cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 199 ||||| |||| || || |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 5432369 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 5432428 Query: 200 tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 259 | |||||||||| ||||| | |||||||||||||||||||||||| |||||||||| | Sbjct: 5432429 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 5432488 Query: 260 tgggcctcatccagttcaaagac 282 | |||||| |||||||||||||| Sbjct: 5432489 tcggcctcctccagttcaaagac 5432511
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 149 bits (75), Expect = 8e-33 Identities = 134/153 (87%), Gaps = 3/153 (1%) Strand = Plus / Plus Query: 133 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 189 |||||||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct: 7953522 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 7953581 Query: 190 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 249 ||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| || Sbjct: 7953582 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 7953641 Query: 250 ctcggcgatctgggcctcatccagttcaaagac 282 |||||||| || |||||| ||||||| |||||| Sbjct: 7953642 ctcggcgaactcggcctcctccagttgaaagac 7953674
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 149 bits (75), Expect = 8e-33 Identities = 134/153 (87%), Gaps = 3/153 (1%) Strand = Plus / Plus Query: 133 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 189 |||||||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct: 7951357 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 7951416 Query: 190 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 249 ||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| || Sbjct: 7951417 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 7951476 Query: 250 ctcggcgatctgggcctcatccagttcaaagac 282 |||||||| || |||||| ||||||| |||||| Sbjct: 7951477 ctcggcgaactcggcctcctccagttgaaagac 7951509
>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10, complete sequence Length = 143298 Score = 149 bits (75), Expect = 8e-33 Identities = 134/153 (87%), Gaps = 3/153 (1%) Strand = Plus / Plus Query: 133 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 189 |||||||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct: 20885 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 20944 Query: 190 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 249 ||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| || Sbjct: 20945 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 21004 Query: 250 ctcggcgatctgggcctcatccagttcaaagac 282 |||||||| || |||||| ||||||| |||||| Sbjct: 21005 ctcggcgaactcggcctcctccagttgaaagac 21037
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 149 bits (75), Expect = 8e-33 Identities = 134/153 (87%), Gaps = 3/153 (1%) Strand = Plus / Plus Query: 133 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 189 |||||||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct: 139120 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 139179 Query: 190 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 249 ||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| || Sbjct: 139180 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 139239 Query: 250 ctcggcgatctgggcctcatccagttcaaagac 282 |||||||| || |||||| ||||||| |||||| Sbjct: 139240 ctcggcgaactcggcctcctccagttgaaagac 139272
>ref|NM_120068.3| Arabidopsis thaliana ATPase AT4G39080 mRNA, complete cds Length = 4147 Score = 67.9 bits (34), Expect = 2e-08 Identities = 139/174 (79%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 |||||||||||||||| || ||| ||||||| || | ||| ||||| | |||| || | Sbjct: 122 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 181 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaagacctca 286 | || || ||| ||||||| |||| || ||||| |||||| |||| ||||||||||| | Sbjct: 182 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagacctta 241 Query: 287 acgcagacaaaagcccgtttcaacgcacctacgctgcacagatcaaaaggtgtg 340 | |||| || ||||| |||||||| || ||||| |||||||| ||||| |||| Sbjct: 242 attcagagaagagcccatttcaacgtacttacgcagcacagattaaaagatgtg 295
>gb|AY060557.1| Arabidopsis thaliana AT4g39080/F19H22_180 mRNA, complete cds Length = 2819 Score = 67.9 bits (34), Expect = 2e-08 Identities = 139/174 (79%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 |||||||||||||||| || ||| ||||||| || | ||| ||||| | |||| || | Sbjct: 113 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 172 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaagacctca 286 | || || ||| ||||||| |||| || ||||| |||||| |||| ||||||||||| | Sbjct: 173 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagacctta 232 Query: 287 acgcagacaaaagcccgtttcaacgcacctacgctgcacagatcaaaaggtgtg 340 | |||| || ||||| |||||||| || ||||| |||||||| ||||| |||| Sbjct: 233 attcagagaagagcccatttcaacgtacttacgcagcacagattaaaagatgtg 286
>gb|BT002615.1| Arabidopsis thaliana At4g39080/F19H22_180 mRNA, complete cds Length = 2466 Score = 67.9 bits (34), Expect = 2e-08 Identities = 139/174 (79%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 |||||||||||||||| || ||| ||||||| || | ||| ||||| | |||| || | Sbjct: 38 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 97 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaagacctca 286 | || || ||| ||||||| |||| || ||||| |||||| |||| ||||||||||| | Sbjct: 98 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagacctta 157 Query: 287 acgcagacaaaagcccgtttcaacgcacctacgctgcacagatcaaaaggtgtg 340 | |||| || ||||| |||||||| || ||||| |||||||| ||||| |||| Sbjct: 158 attcagagaagagcccatttcaacgtacttacgcagcacagattaaaagatgtg 211
>ref|NM_127713.3| Arabidopsis thaliana ATPase AT2G21410 mRNA, complete cds Length = 2860 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||||||||||| || ||||||| ||| | || |||||| | |||| || | Sbjct: 124 cgatggatctgatgcggtcagaaccgatgcaactcgttcaagtcattgttcccatggaat 183 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || || || ||||||| | ||||||||||| || ||| ||||||||||||| Sbjct: 184 ctgctcatcttaccgtctcttatctcggcgatctcggtctcgtccagttcaaaga 238
>emb|AJ580823.1|LCO580823 Lotus corniculatus var. japonicus ORF1, ORF2, ORF3 and genes for vacuolar proton-ATPase subunit-like protein, papain-like cysteine proteinase-like protein 1 and papain-like cysteine proteinase-like protein 2 Length = 46563 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||| | || || ||| ||||||| ||| | || |||| ||||||| ||| | Sbjct: 13091 cgatggatctgttccgttccgagccgatgcaactcgttcaactcatcatccccatcgaat 13150 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || |||| | | |||||| |||||||||| || |||||| | ||||||||||| Sbjct: 13151 ctgctcaccgcactgtctcctacctcggcgaccttggcctccttcagttcaaaga 13205
>gb|AY124855.1| Arabidopsis thaliana At2g21410/F3K23.17 mRNA, complete cds Length = 2466 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||||||||||| || ||||||| ||| | || |||||| | |||| || | Sbjct: 41 cgatggatctgatgcggtcagaaccgatgcaactcgttcaagtcattgttcccatggaat 100 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || || || ||||||| | ||||||||||| || ||| ||||||||||||| Sbjct: 101 ctgctcatcttaccgtctcttatctcggcgatctcggtctcgtccagttcaaaga 155
>gb|AY099690.1| Arabidopsis thaliana putative vacuolar proton-ATPase subunit (At2g21410) mRNA, complete cds Length = 2667 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||||||||||| || ||||||| ||| | || |||||| | |||| || | Sbjct: 120 cgatggatctgatgcggtcagaaccgatgcaactcgttcaagtcattgttcccatggaat 179 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || || || ||||||| | ||||||||||| || ||| ||||||||||||| Sbjct: 180 ctgctcatcttaccgtctcttatctcggcgatctcggtctcgtccagttcaaaga 234
>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence Length = 125045 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||||||||||| || ||||||| ||| | || |||||| | |||| || | Sbjct: 59782 cgatggatctgatgcggtcagaaccgatgcaactcgttcaagtcattgttcccatggaat 59841 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || || || ||||||| | ||||||||||| || ||| ||||||||||||| Sbjct: 59842 ctgctcatcttaccgtctcttatctcggcgatctcggtctcgtccagttcaaaga 59896
>gb|AF424556.1|AF424556 Arabidopsis thaliana At2g21410/F3K23.17 mRNA, complete cds Length = 2631 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||||||||||| || ||||||| ||| | || |||||| | |||| || | Sbjct: 77 cgatggatctgatgcggtcagaaccgatgcaactcgttcaagtcattgttcccatggaat 136 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || || || ||||||| | ||||||||||| || ||| ||||||||||||| Sbjct: 137 ctgctcatcttaccgtctcttatctcggcgatctcggtctcgtccagttcaaaga 191
>gb|AY053417.1| Arabidopsis thaliana At2g21410/F3K23.17 mRNA, complete cds Length = 2852 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||||||||||| || ||||||| ||| | || |||||| | |||| || | Sbjct: 116 cgatggatctgatgcggtcagaaccgatgcaactcgttcaagtcattgttcccatggaat 175 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || || || ||||||| | ||||||||||| || ||| ||||||||||||| Sbjct: 176 ctgctcatcttaccgtctcttatctcggcgatctcggtctcgtccagttcaaaga 230
>dbj|AP005666.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09E01, TM0258b, complete sequence Length = 46491 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||| | || || ||| ||||||| ||| | || |||| ||||||| ||| | Sbjct: 13157 cgatggatctgttccgttccgagccgatgcaactcgttcaactcatcatccccatcgaat 13216 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || |||| | | |||||| |||||||||| || |||||| | ||||||||||| Sbjct: 13217 ctgctcaccgcactgtctcctacctcggcgaccttggcctccttcagttcaaaga 13271
>dbj|AB092808.1| Lotus japonicus gene for hypothetical proteins, complete and partial cds, clone:BAC259.12D-1 Length = 32644 Score = 46.1 bits (23), Expect = 0.087 Identities = 92/115 (80%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 ||||||||||| | || || ||| ||||||| ||| | || |||| ||||||| ||| | Sbjct: 267 cgatggatctgttccgttccgagccgatgcaactcgttcaactcatcatccccatcgaat 326 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaaga 281 | || |||| | | |||||| |||||||||| || |||||| | ||||||||||| Sbjct: 327 ctgctcaccgcactgtctcctacctcggcgaccttggcctccttcagttcaaaga 381
>ref|XM_518361.1| PREDICTED: Pan troglodytes similar to Valyl-tRNA synthetase 2 (LOC462568), mRNA Length = 2136 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 76 ggggccgcgcggctcgccgcccgcc 52
>gb|AF134726.1| Homo sapiens BAC clone 215O12 NG35, NG36, G9A, NG22, G9, HSP70-2, HSP70-1, HSP70-HOM, snRNP, G7A, NG37, NG23, and MutSH5 genes, complete cds Length = 180283 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 122352 ggggccgcgcggctcgccgcccgcc 122328
>ref|NM_006295.2| Homo sapiens valyl-tRNA synthetase (VARS), mRNA Length = 4308 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 115 ggggccgcgcggctcgccgcccgcc 91
>emb|AL929592.8| Human DNA sequence from clone DAQB-147D11 on chromosome 6 Contains the 5' end of the VARS2 gene for valyl-tRNA synthetase 2, the LSM2 gene for the LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) factor, the HSPA1L gene for the heat shock 10kDa protein 1-like factor, the HSPA1A gene for the heat shock 70kDa protein 1A, the HSPA1B gene for the heat shock 70kDa protein 1B, the C6orf48 gene for chromosome 6 open reading frame 48, and 4 CpG islands, complete sequence Length = 59836 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 7637 ggggccgcgcggctcgccgcccgcc 7661
>emb|AL671762.10| Human DNA sequence from clone XXbac-254B15 on chromosome 6 contains the 5' end of the VARS2 gene for valyl-tRNA synthetase 2, the gene for chromosome 6 open reading frame 28, the HSPA1L gene for heat shock 70kDa protein 1-like, the HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B gene for heat shock 70kDa protein 1B, the gene for chromosome 6 open reading frame 48, the NEU1 gene for sialidase 1 (lysosomal sialidase), the gene forchromosome 6 open reading frame 29, the gene for HLA-B associated transcript 8, the gene for chromosome 6 open reading frame 46 and eight CpG islands, complete sequence Length = 113582 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 3669 ggggccgcgcggctcgccgcccgcc 3693
>emb|AL662834.8| Human DNA sequence from clone XXbac-40G17 on chromosome 6 contains the MSH5 gene for mutS homolog 5 (e. coli), the gene for NG23 protein, the gene for chromosome 6 open reading frame 27, the VARS2 gene for valyl-tRNA synthetase 2, the gene for chromosome 6 open reading frame 28, the HSPA1L gene for heat shock 70kDa protein 1-like, the HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B gene for heat shock 70kDa protein 1B, the gene for chromosome 6 open reading frame 48, the NEU1 gene for sialidase 1 (lysosomal sialidase), the gene for chromosome 6 open reading frame 29, the BAT8 gene for HLA-B associated transcript 8, the gene for chromosome 6 open reading frame 46 and nine CpG islands, complete sequence Length = 179894 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 59695 ggggccgcgcggctcgccgcccgcc 59719
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 cgccgcgggcctgcacgccat 137 ||||||||||||||||||||| Sbjct: 158710 cgccgcgggcctgcacgccat 158730
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 cgcgctgctcgccgcccgcccatcc 79 |||| |||||||||||||||||||| Sbjct: 938592 cgcgttgctcgccgcccgcccatcc 938616
>emb|CR925765.2| Human DNA sequence from clone DADB-149K5 on chromosome 6, complete sequence Length = 57997 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 44898 ggggccgcgcggctcgccgcccgcc 44922
>emb|CR759915.6| Human DNA sequence from clone DAAP-21F2 on chromosome 6, complete sequence Length = 85491 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 40866 ggggccgcgcggctcgccgcccgcc 40890
>emb|CR759787.4| Human DNA sequence from clone DAMC-117B11 on chromosome 6, complete sequence Length = 113650 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 102447 ggggccgcgcggctcgccgcccgcc 102471
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 148199 ggggccgcgcggctcgccgcccgcc 148175
>emb|AJ438978.1|MCR438978 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase subunit 100 kDa subunit (vpha-a gene) Length = 2783 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 atggatctgatgcggtcggaggcgatgca 197 |||||||||||||| |||||| ||||||| Sbjct: 101 atggatctgatgcgatcggagccgatgca 129
>emb|AL935270.6| Mouse DNA sequence from clone RP23-391A14 on chromosome 2, complete sequence Length = 127274 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 cctctcgccccctccctgctc 29 ||||||||||||||||||||| Sbjct: 40979 cctctcgccccctccctgctc 40959
>emb|AL132713.11|HSDJ71I17 Human DNA sequence from clone RP1-71I17 on chromosome 6p21.2-22.1, complete sequence Length = 163682 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ggggccgcgctgctcgccgcccgcc 74 |||||||||| |||||||||||||| Sbjct: 15914 ggggccgcgcggctcgccgcccgcc 15890
>gb|AC098644.4| Takifugu rubripes clone 205P11, complete sequence Length = 89481 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcagacaaaagcccgtttca 308 |||||||||||||||||||| Sbjct: 65957 gcagacaaaagcccgtttca 65976
>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence Length = 197843 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 tcggggccgcgctgctcgccgccc 71 |||||||||||| ||||||||||| Sbjct: 109278 tcggggccgcgccgctcgccgccc 109301
>ref|XM_467662.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1702 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcatcctcctctcgccccc 20 |||||||||||||||||||| Sbjct: 471 ctcatcctcctctcgccccc 490
>gb|AY771996.1| Homo sapiens interleukin 12 receptor, beta 1 (IL12RB1) gene, complete cds Length = 30584 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cctctcgccccctccctgct 28 |||||||||||||||||||| Sbjct: 3294 cctctcgccccctccctgct 3275
>ref|XM_428696.1| PREDICTED: Gallus gallus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 (LOC431146), partial mRNA Length = 484 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ccgcgctgctcgccgcccgc 73 |||||||||||||||||||| Sbjct: 129 ccgcgctgctcgccgcccgc 110
>ref|XM_614019.2| PREDICTED: Bos taurus similar to meteorin, glial cell differentiation regulator-like (LOC534297), mRNA Length = 2750 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 gccgcccgcccatccccgcc 84 |||||||||||||||||||| Sbjct: 1200 gccgcccgcccatccccgcc 1181
>emb|Y18000.1|HSAY18000 Homo sapiens NF2 gene Length = 126138 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ccgcgctgctcgccgcccgc 73 |||||||||||||||||||| Sbjct: 124587 ccgcgctgctcgccgcccgc 124568
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gccgcgctgctcgccgcccg 72 |||||||||||||||||||| Sbjct: 1159852 gccgcgctgctcgccgcccg 1159833
>emb|AL033379.2|HS417O22 Human DNA sequence from clone RP3-417O22 on chromosome 6q16.1-16.3 Contains an eukaryotic translation elongation factor 1 gamma (EEF1G) pseudogene, a novel gene and the GPR63 gene for G protein-coupled receptor 63 (PSP24), complete sequence Length = 107761 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ttgagattttttaaggaaca 377 |||||||||||||||||||| Sbjct: 96723 ttgagattttttaaggaaca 96704
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ggcctgcacgccatggcgcgcagc 147 ||||||||||| |||||||||||| Sbjct: 268779 ggcctgcacgcgatggcgcgcagc 268802
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ggcctgcacgccatggcgcgcagc 147 ||||||||||| |||||||||||| Sbjct: 34454 ggcctgcacgcgatggcgcgcagc 34477
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 40.1 bits (20), Expect = 5.4 Identities = 92/116 (79%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 |||||||||||||||| || ||| ||||||| || | ||| ||||| | |||| || | Sbjct: 123705 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 123764 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaagac 282 | || || ||| ||||||| |||| || ||||| |||||| |||| ||||||||| Sbjct: 123765 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagac 123820
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project) Length = 100469 Score = 40.1 bits (20), Expect = 5.4 Identities = 92/116 (79%) Strand = Plus / Plus Query: 167 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 226 |||||||||||||||| || ||| ||||||| || | ||| ||||| | |||| || | Sbjct: 85695 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 85754 Query: 227 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcaaagac 282 | || || ||| ||||||| |||| || ||||| |||||| |||| ||||||||| Sbjct: 85755 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagac 85810
>gb|AC004882.3| Homo sapiens PAC clone RP1-76B20 from 22, complete sequence Length = 171682 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ccgcgctgctcgccgcccgc 73 |||||||||||||||||||| Sbjct: 66710 ccgcgctgctcgccgcccgc 66691
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cctctcgccccctccctgct 28 |||||||||||||||||||| Sbjct: 131304 cctctcgccccctccctgct 131323
>gb|AF043491.1|AF043491 Oryctolagus cuniculus prostaglandin E2 receptor subtype EP1 mRNA, partial cds Length = 781 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ggccgcgctgctcgccgccc 71 |||||||||||||||||||| Sbjct: 67 ggccgcgctgctcgccgccc 86
>gb|AC005529.7| Homo sapiens chromosome 22 clone bk256d12 map 22q12, complete sequence Length = 318488 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ccgcgctgctcgccgcccgc 73 |||||||||||||||||||| Sbjct: 247967 ccgcgctgctcgccgcccgc 247948
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tcaacgcagacaaaagcccg 303 |||||||||||||||||||| Sbjct: 2733381 tcaacgcagacaaaagcccg 2733362
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctcctctcgccccctccct 25 |||||||||||||||||||| Sbjct: 28360074 cctcctctcgccccctccct 28360055
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcatcctcctctcgccccc 20 |||||||||||||||||||| Sbjct: 30688178 ctcatcctcctctcgccccc 30688197
>gb|AC138982.2| Homo sapiens chromosome 5 clone RP13-284O6, complete sequence Length = 110563 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctcctctcgccccctccct 25 |||||||||||||||||||| Sbjct: 78475 cctcctctcgccccctccct 78456
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 atcggggccgcgctgctcgccgcc 70 |||||| ||||||||||||||||| Sbjct: 8444514 atcgggtccgcgctgctcgccgcc 8444491
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ggccgcgctgctcgccgccc 71 |||||||||||||||||||| Sbjct: 2006866 ggccgcgctgctcgccgccc 2006885
>ref|XM_236613.3| PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC315988), mRNA Length = 2628 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gcgctgctcgccgcccgccc 75 |||||||||||||||||||| Sbjct: 115 gcgctgctcgccgcccgccc 96
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gggccgcgctgctcgccgcc 70 |||||||||||||||||||| Sbjct: 4225959 gggccgcgctgctcgccgcc 4225940
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcatcctcctctcgccccc 20 |||||||||||||||||||| Sbjct: 28325 ctcatcctcctctcgccccc 28344
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctcctctcgccccctccct 25 |||||||||||||||||||| Sbjct: 72652 cctcctctcgccccctccct 72633
>emb|X89531.1|EV1VP2GEN Echovirus 1 DNA for 5'UTR and VP2 capsid protein gene Length = 1412 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cgcgggcctgcacgccatgg 139 |||||||||||||||||||| Sbjct: 1137 cgcgggcctgcacgccatgg 1118
>dbj|AK120606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A19, full insert sequence Length = 1702 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcatcctcctctcgccccc 20 |||||||||||||||||||| Sbjct: 471 ctcatcctcctctcgccccc 490
>gb|AC008044.4|AC008044 Homo sapiens chromosome 14 BAC containing genes for ABH and nuclear receptor coactivator NCoA-62, complete sequence Length = 125304 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 agttgagattttttaaggaa 375 |||||||||||||||||||| Sbjct: 71896 agttgagattttttaaggaa 71915
>dbj|AK065325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P24, full insert sequence Length = 1596 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcgccgtctcccacctcggc 255 |||||||||||||||||||| Sbjct: 200 tcgccgtctcccacctcggc 181
>emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chromosome 11, complete sequence Length = 211363 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 agatcaaaaggtgtgctgaaatgt 349 |||||||||| ||||||||||||| Sbjct: 107154 agatcaaaagttgtgctgaaatgt 107131 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,823,073 Number of Sequences: 3902068 Number of extensions: 2823073 Number of successful extensions: 62706 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 61723 Number of HSP's gapped (non-prelim): 982 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)