>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 20/36 (55%), Positives = 27/36 (75%)
 Frame = +2

Query: 272 NPKAFAFRSATRAKRLQSRSAEIEQRRLHVPIMDRS 379
           NPKAFA  SA R  R   R+A+I Q++LHVP++DR+
Sbjct: 32  NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRT 67

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +2

Query: 272 NPKAFAFRSATRAKRLQSRSAEIEQRRLHVPIMDRS 379
           NPKAFA +SA R  R   R+ +++ ++ H+P++DR+
Sbjct: 41  NPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRT 76

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +2

Query: 272 NPKAFAFRSATRAKRLQSRSAEIEQRRLHVPIMDRS 379
           N KAFA  +  +  R   RS+++ +R+LHVP++DR+
Sbjct: 27  NAKAFAVAAPGKMARTMQRSSDVNERKLHVPMVDRT 62

>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked nuclear protein)
            (Heterochromatin protein 2) (HP1 alpha-interacting
            protein) (HP1-BP38 protein)
          Length = 2476

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 107  KPR-EHRLRKTLLTMAPGEAGVEQPRK 184
            KPR  HRL +  LT++ GE+G E+P K
Sbjct: 1320 KPRYRHRLLRHKLTLSDGESGEEKPTK 1346

>PRIM_PSEAE (Q9I5W0) DNA primase (EC 2.7.7.-)|
          Length = 664

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 163 GFPRSHGEEGFAEAVLAGFLRRRRGMAAGKEESGGRG 53
           GF   H +  F +AV    L +R GM   +EE GGRG
Sbjct: 72  GFVMDHDQLEFPQAVEE--LAKRAGMDVPREERGGRG 106

>KCNB2_RAT (Q63099) Potassium voltage-gated channel subfamily B member 2|
           (Voltage-gated potassium channel subunit Kv2.2) (CDRK)
          Length = 907

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 285 LPSVQQQERSGYNLDQRKLSNAVSMCQSW 371
           LP +Q+ +  G   D RKL++  ++C +W
Sbjct: 215 LPELQENDEFGQPSDNRKLAHVEAVCIAW 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,936,045
Number of Sequences: 219361
Number of extensions: 414837
Number of successful extensions: 1271
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)