ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 2e-05
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 58 2e-05
5gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 46 0.082
6gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 46 0.082
7ref|XM_757278.1| Ustilago maydis 521 hypothetical protein (UM062... 46 0.082
8dbj|AK107425.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
9dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 46 0.082
10ref|XM_471722.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
11gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
12gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
13ref|XM_322859.1| Neurospora crassa OR74A predicted protein (NCU1... 42 1.3
14ref|XM_953024.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.3
15gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome... 42 1.3
16gb|AE005849.1| Caulobacter crescentus CB15 section 175 of 359 of... 42 1.3
17gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.3
18gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.3
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
22gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 o... 42 1.3
23dbj|AK100039.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
24dbj|AK099875.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
25gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, comple... 42 1.3
26dbj|AK061132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
27dbj|AK059594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
29emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
30gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 40 5.1
31gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.1
32gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete... 40 5.1
33ref|XM_323700.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.1
34ref|XM_951236.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.1
35gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete se... 40 5.1
36ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.1
37gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.1
38gb|DQ428095.1| Sorghum bicolor voucher PI585454 locus PRC0162 ge... 40 5.1
39gb|DQ428094.1| Sorghum bicolor voucher PI267539 locus PRC0162 ge... 40 5.1
40gb|DQ428093.1| Sorghum bicolor voucher PI267408 locus PRC0162 ge... 40 5.1
41gb|DQ428092.1| Sorghum bicolor voucher PI152702 locus PRC0162 ge... 40 5.1
42gb|DQ428091.1| Sorghum bicolor voucher NSL92371 locus PRC0162 ge... 40 5.1
43gb|DQ428090.1| Sorghum bicolor voucher NSL87666 locus PRC0162 ge... 40 5.1
44gb|DQ428089.1| Sorghum bicolor voucher NSL56174 locus PRC0162 ge... 40 5.1
45gb|DQ428088.1| Sorghum bicolor voucher NSL56003 locus PRC0162 ge... 40 5.1
46gb|DQ428087.1| Sorghum bicolor voucher NSL55243 locus PRC0162 ge... 40 5.1
47gb|DQ428086.1| Sorghum bicolor voucher NSL51365 locus PRC0162 ge... 40 5.1
48gb|DQ428085.1| Sorghum bicolor voucher NSL51030 locus PRC0162 ge... 40 5.1
49gb|DQ428084.1| Sorghum bicolor voucher NSL50875 locus PRC0162 ge... 40 5.1
50gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.1
51gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 40 5.1
52gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, compl... 40 5.1
53emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.1
54gb|AY104032.1| Zea mays PCO099184 mRNA sequence 40 5.1
55gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Ho... 40 5.1 
>dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010C12, full
           insert sequence
          Length = 4093

 Score =  103 bits (52), Expect = 4e-19
 Identities = 153/187 (81%), Gaps = 6/187 (3%)
 Strand = Plus / Plus

                                                                       
Query: 199 caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 252
           |||||| |||||||||||| ||||||||||||| |||||      || || |||||| ||
Sbjct: 131 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 190

                                                                       
Query: 253 tgaagggggcgggaggaagaaccccaaggcttttgccttccgttcagcaacaagagcgaa 312
           ||| || |||| |||||||||||| |||||||||||||| |  |||||  |||  || ||
Sbjct: 191 tgacggtggcgagaggaagaacccgaaggcttttgcctttcagtcagctgcaaaggccaa 250

                                                                       
Query: 313 gcggctacaatctcgatcagcggaaattgagcaacgccgtctccatgtgccaatcatgga 372
           ||| |||||| | ||||| || || ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 251 gcgtctacaagcacgatcggctgagattgaacaacgtcgtcttcatgtgccaattatgga 310

                  
Query: 373 tcgctca 379
           |||||||
Sbjct: 311 tcgctca 317
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 311      aagcggctacaatctcgatcagcggaaattgagcaacgccgtctccatgtgccaatcatg 370
                ||||| |||||| | ||||| || || ||||| ||||| ||||| ||||||||||| |||
Sbjct: 12271216 aagcgtctacaagcacgatcggctgagattgaacaacgtcgtcttcatgtgccaattatg 12271275

                         
Query: 371      gatcgctca 379
                |||||||||
Sbjct: 12271276 gatcgctca 12271284



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 199      caagtcgggcgcgaaggcgcggaagaagaagggcaaggg 237
                |||||| |||||||||||| ||||||||||||| |||||
Sbjct: 12270332 caagtccggcgcgaaggcgaggaagaagaaggggaaggg 12270370



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 202      gtcgggcgcgaaggcgcggaaga 224
                |||||||||||||||||||||||
Sbjct: 35125133 gtcgggcgcgaaggcgcggaaga 35125155
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 311      aagcggctacaatctcgatcagcggaaattgagcaacgccgtctccatgtgccaatcatg 370
                ||||| |||||| | ||||| || || ||||| ||||| ||||| ||||||||||| |||
Sbjct: 12267979 aagcgtctacaagcacgatcggctgagattgaacaacgtcgtcttcatgtgccaattatg 12268038

                         
Query: 371      gatcgctca 379
                |||||||||
Sbjct: 12268039 gatcgctca 12268047



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 199      caagtcgggcgcgaaggcgcggaagaagaagggcaaggg 237
                |||||| |||||||||||| ||||||||||||| |||||
Sbjct: 12267095 caagtccggcgcgaaggcgaggaagaagaaggggaaggg 12267133



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 202      gtcgggcgcgaaggcgcggaaga 224
                |||||||||||||||||||||||
Sbjct: 35215205 gtcgggcgcgaaggcgcggaaga 35215227
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                         
Query: 311   aagcggctacaatctcgatcagcggaaattgagcaacgccgtctccatgtgccaatcatg 370
             ||||| |||||| | ||||| || || ||||| ||||| ||||| ||||||||||| |||
Sbjct: 40749 aagcgtctacaagcacgatcggctgagattgaacaacgtcgtcttcatgtgccaattatg 40808

                      
Query: 371   gatcgctca 379
             |||||||||
Sbjct: 40809 gatcgctca 40817



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 199   caagtcgggcgcgaaggcgcggaagaagaagggcaaggg 237
             |||||| |||||||||||| ||||||||||||| |||||
Sbjct: 39865 caagtccggcgcgaaggcgaggaagaagaaggggaaggg 39903
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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
              sequence
          Length = 130272

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 202    gtcgggcgcgaaggcgcggaaga 224
              |||||||||||||||||||||||
Sbjct: 126034 gtcgggcgcgaaggcgcggaaga 126056
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence,
            complete sequence
          Length = 156606

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 202  gtcgggcgcgaaggcgcggaaga 224
            |||||||||||||||||||||||
Sbjct: 3894 gtcgggcgcgaaggcgcggaaga 3916
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>ref|XM_757278.1| Ustilago maydis 521 hypothetical protein (UM06224.1) partial mRNA
          Length = 3678

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 220 gaagaagaagggcaagggcgccg 242
           |||||||||||||||||||||||
Sbjct: 849 gaagaagaagggcaagggcgccg 871
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>dbj|AK107425.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-F11, full
            insert sequence
          Length = 1453

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 202  gtcgggcgcgaaggcgcggaaga 224
            |||||||||||||||||||||||
Sbjct: 1080 gtcgggcgcgaaggcgcggaaga 1058
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 236    ggcgccgccggcgatgatgaagg 258
              |||||||||||||||||||||||
Sbjct: 859519 ggcgccgccggcgatgatgaagg 859541
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>ref|XM_471722.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 978

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 gggggaagccggcgtcgagca 174
           |||||||||||||||||||||
Sbjct: 143 gggggaagccggcgtcgagca 163
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>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
              complete sequence
          Length = 164709

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 225    agaagggcaagggcgccgccg 245
              |||||||||||||||||||||
Sbjct: 153818 agaagggcaagggcgccgccg 153838
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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0542B04, complete sequence
          Length = 182823

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   gggggaagccggcgtcgagca 174
             |||||||||||||||||||||
Sbjct: 94078 gggggaagccggcgtcgagca 94098
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>ref|XM_322859.1| Neurospora crassa OR74A predicted protein (NCU10002.1) partial mRNA
          Length = 3162

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 213 aggcgcggaagaagaagggca 233
           |||||||||||||||||||||
Sbjct: 287 aggcgcggaagaagaagggca 307
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>ref|XM_953024.1| Neurospora crassa OR74A hypothetical protein (NCU10002.1) partial
           mRNA
          Length = 3162

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 213 aggcgcggaagaagaagggca 233
           |||||||||||||||||||||
Sbjct: 287 aggcgcggaagaagaagggca 307
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>gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome 5, complete sequence
          Length = 206926

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     ccctccactctcctcctttcc 79
              |||||||||||||||||||||
Sbjct: 205117 ccctccactctcctcctttcc 205097
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>gb|AE005849.1| Caulobacter crescentus CB15 section 175 of 359 of the complete genome
          Length = 14878

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 156  gggaagccggcgtcgagcagc 176
            |||||||||||||||||||||
Sbjct: 2561 gggaagccggcgtcgagcagc 2581
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 237     gcgccgccggcgatgatgaag 257
               |||||||||||||||||||||
Sbjct: 2812276 gcgccgccggcgatgatgaag 2812296
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 158     gaagccggcgtcgagcagccg 178
               |||||||||||||||||||||
Sbjct: 3423711 gaagccggcgtcgagcagccg 3423731
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 154      gggggaagccggcgtcgagca 174
                |||||||||||||||||||||
Sbjct: 13743186 gggggaagccggcgtcgagca 13743166
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 154      gggggaagccggcgtcgagca 174
                |||||||||||||||||||||
Sbjct: 20249482 gggggaagccggcgtcgagca 20249502
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 225      agaagggcaagggcgccgccg 245
                |||||||||||||||||||||
Sbjct: 18986440 agaagggcaagggcgccgccg 18986460
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>gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete
            genome
          Length = 16268

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 154  gggggaagccggcgtcgagca 174
            |||||||||||||||||||||
Sbjct: 6270 gggggaagccggcgtcgagca 6250
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>dbj|AK100039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151D13, full
           insert sequence
          Length = 1612

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 agaagggcaagggcgccgccg 245
           |||||||||||||||||||||
Sbjct: 191 agaagggcaagggcgccgccg 211
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>dbj|AK099875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111H01, full
           insert sequence
          Length = 1533

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 agaagggcaagggcgccgccg 245
           |||||||||||||||||||||
Sbjct: 214 agaagggcaagggcgccgccg 234
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>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence
          Length = 185363

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   ccctccactctcctcctttcc 79
            |||||||||||||||||||||
Sbjct: 9553 ccctccactctcctcctttcc 9533
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>dbj|AK061132.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A07, full
           insert sequence
          Length = 1423

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 gggggaagccggcgtcgagca 174
           |||||||||||||||||||||
Sbjct: 439 gggggaagccggcgtcgagca 459
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>dbj|AK059594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D08, full
           insert sequence
          Length = 1442

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 agaagggcaagggcgccgccg 245
           |||||||||||||||||||||
Sbjct: 256 agaagggcaagggcgccgccg 276
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 154      gggggaagccggcgtcgagca 174
                |||||||||||||||||||||
Sbjct: 20559805 gggggaagccggcgtcgagca 20559825
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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
              complete sequence
          Length = 187359

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    gggggaagccggcgtcgagca 174
              |||||||||||||||||||||
Sbjct: 137794 gggggaagccggcgtcgagca 137774
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus
              region
          Length = 160897

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 213    aggcgcggaagaagaagggcaagg 236
              ||||||||||||||||||| ||||
Sbjct: 124755 aggcgcggaagaagaaggggaagg 124778
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 72      tcctttccggcggccatccc 91
               ||||||||||||||||||||
Sbjct: 1763328 tcctttccggcggccatccc 1763347
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>gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence
          Length = 100828

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   gggggaagccggcgtcgagcagcc 177
             |||||| |||||||||||||||||
Sbjct: 51523 gggggatgccggcgtcgagcagcc 51500
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>ref|XM_323700.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial
           mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 269 aagaaccccaaggcttttgccttc 292
           |||||||||||||| |||||||||
Sbjct: 82  aagaaccccaaggcctttgccttc 105
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>ref|XM_951236.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial
           mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 269 aagaaccccaaggcttttgccttc 292
           |||||||||||||| |||||||||
Sbjct: 82  aagaaccccaaggcctttgccttc 105
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>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence
          Length = 137052

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 220   gaagaagaagggcaagggcgccgc 243
             |||||||||||||||||| |||||
Sbjct: 56134 gaagaagaagggcaagggtgccgc 56157
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>ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02793.1)
            partial mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  gaagaagaagggcaagggcg 239
            ||||||||||||||||||||
Sbjct: 1596 gaagaagaagggcaagggcg 1615
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    gtggccaagtcgggcgcgaaggcg 217
              |||||||||||||| |||||||||
Sbjct: 231552 gtggccaagtcgggggcgaaggcg 231575
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>gb|DQ428095.1| Sorghum bicolor voucher PI585454 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428094.1| Sorghum bicolor voucher PI267539 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428093.1| Sorghum bicolor voucher PI267408 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428092.1| Sorghum bicolor voucher PI152702 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428091.1| Sorghum bicolor voucher NSL92371 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428090.1| Sorghum bicolor voucher NSL87666 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428089.1| Sorghum bicolor voucher NSL56174 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428088.1| Sorghum bicolor voucher NSL56003 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428087.1| Sorghum bicolor voucher NSL55243 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428086.1| Sorghum bicolor voucher NSL51365 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428085.1| Sorghum bicolor voucher NSL51030 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428084.1| Sorghum bicolor voucher NSL50875 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 aagaagggcaagggcgccgc 243
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 245     ggcgatgatgaagggggcgg 264
               ||||||||||||||||||||
Sbjct: 2360584 ggcgatgatgaagggggcgg 2360565
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  ggaagaagaagggcaagggc 238
            ||||||||||||||||||||
Sbjct: 2731 ggaagaagaagggcaagggc 2750
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>gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, complete sequence
          Length = 183330

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    ccctcgccctccactctcctcctt 76
             |||||||||||| |||||||||||
Sbjct: 23091 ccctcgccctcccctctcctcctt 23114
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     ggcgccgccggcgatgatga 255
               ||||||||||||||||||||
Sbjct: 2704315 ggcgccgccggcgatgatga 2704296
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>gb|AY104032.1| Zea mays PCO099184 mRNA sequence
          Length = 1242

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 123 gcctccgcaaaaccctcctc 142
           ||||||||||||||||||||
Sbjct: 7   gcctccgcaaaaccctcctc 26
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>gb|AC130103.4| Rattus norvegicus  BAC CH230-41L20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224716

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     cctccactctcctcctttcc 79
              ||||||||||||||||||||
Sbjct: 110683 cctccactctcctcctttcc 110664


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,715,785
Number of Sequences: 3902068
Number of extensions: 2715785
Number of successful extensions: 77655
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76770
Number of HSP's gapped (non-prelim): 884
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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