ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14d01 |
|---|---|
| Clone Library Name | barley_pub |
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 34.3 bits (77), Expect = 0.17 Identities = 23/61 (37%), Positives = 26/61 (42%) Frame = -2 Query: 212 AGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCG 33 +G P P RG A+ +G G P G R G G P P RPPGG R G Sbjct: 491 SGGRPGPGGNRGPASANRGPGGP-----GGGARGPGGPGGAPRGPGGRPPGGGNRRPPGG 545 Query: 32 G 30 G Sbjct: 546 G 546
>ALLA_RHOCA (O68109) Ureidoglycolate hydrolase (EC 3.5.3.19)| Length = 161 Score = 32.3 bits (72), Expect = 0.65 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +3 Query: 237 RPPCASRGVLVVPKTPPELLCVAPGL-AVPL-FNAATTASGRGAHINTGSWAQVV*GEGG 410 R P S+ L + P L+CVA VP+ F A TA G+G +I W V+ G Sbjct: 74 RHPLGSQAFLPLDGVP-FLVCVAEDADGVPVRFRAFLTAPGQGVNILRNCWHGVLAPIGA 132 Query: 411 PGQAAHSSHVAP-ANL 455 PG+ A + P ANL Sbjct: 133 PGRYAVVDRIGPGANL 148
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 31.6 bits (70), Expect = 1.1 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -2 Query: 212 AGPDPDPDLARGAAAQKKGEGKPHSSFDG----TWTRSGGASRGWPAVPKRRPPGGAVRW 45 AGP P A ++ G P S+ + TW R GA RG P PPG R Sbjct: 500 AGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHP------PPGAGQRP 553 Query: 44 RG-CGGR 27 G GGR Sbjct: 554 SGPTGGR 560 Score = 31.6 bits (70), Expect = 1.1 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -2 Query: 212 AGPDPDPDLARGAAAQKKGEGKPHSSFDG----TWTRSGGASRGWPAVPKRRPPGGAVRW 45 AGP P A ++ G P S+ + TW R GA RG P PPG R Sbjct: 375 AGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHP------PPGAGQRP 428 Query: 44 RG-CGGR 27 G GGR Sbjct: 429 SGPTGGR 435 Score = 31.6 bits (70), Expect = 1.1 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -2 Query: 212 AGPDPDPDLARGAAAQKKGEGKPHSSFDG----TWTRSGGASRGWPAVPKRRPPGGAVRW 45 AGP P A ++ G P S+ + TW R GA RG P PPG R Sbjct: 250 AGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHP------PPGAGQRP 303 Query: 44 RG-CGGR 27 G GGR Sbjct: 304 SGPTGGR 310
>SURE_XANOR (Q5GYL1) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -2 Query: 119 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 15 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGRTVYWIGPAGPEQDA 212
>SURE_XANOM (Q2P1L4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -2 Query: 119 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 15 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGRTVYWIGPAGPEQDA 212
>SURE_XANC5 (Q3BUS4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -2 Query: 119 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 15 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGRTVYWIGPAGPEQDA 212
>SURE_XANAC (Q8PLR4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -2 Query: 119 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 15 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGHTVYWIGPAGPEQDA 212
>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor| Length = 932 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = -2 Query: 212 AGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGA 54 AGPDP+ L+ +A E P D G + P V PPGGA Sbjct: 89 AGPDPEASLSNASAT----ESPPPGERDDRDAAGPGEEKNGPPVASALPPGGA 137
>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9| Length = 531 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/56 (35%), Positives = 21/56 (37%) Frame = -2 Query: 194 PDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGGR 27 P R A K G P G G ASR W P +P GG RG GR Sbjct: 81 PGTPRPPGASKGGRTPPQQ---GGRAGMGRASRSWEGSPGEQPRGGGAGGRGRRGR 133
>MRTFB_XENLA (Q8AYC1) Myocardin-related transcription factor B (MRTF-B)| (xMRTF-B) Length = 1067 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 269 RSENTTRVTLCRSWAGRPPLQCCYDCQRS 355 + +NT T+C AG PP QC + Q S Sbjct: 349 KKQNTINTTICNGNAGAPPAQCSVNRQNS 377
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -3 Query: 376 PVLMCAPRPLAVVAALKRGTASPGATQSN--SGGVFGTTNTP 257 PV + AP P+ + ++ + + A +N +GG+ GTTN P Sbjct: 579 PVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGP 620
>UL49_HHV11 (P10233) Tegument protein UL49| Length = 301 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -2 Query: 218 GVAGPDPDPDLARGAAAQKKGEGKPHSSF----DGTWTRSGGASR---GWPAVPK-RRPP 63 G+A PD PD +R A Q + + F + + GG+S P VP+ RRP Sbjct: 29 GMASPDSPPDTSRRGALQTRSRQRGEVRFVQYDESDYALYGGSSSEDDEHPEVPRTRRPV 88 Query: 62 GGAV 51 GAV Sbjct: 89 SGAV 92
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -3 Query: 376 PVLMCAPRPLAVVAALKRGTASPGATQSN--SGGVFGTTNTP 257 PV + AP P+ + ++ + + A +N +GG+ GTTN P Sbjct: 578 PVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGP 619
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 29.6 bits (65), Expect = 4.2 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = -2 Query: 206 PDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGG 30 P P P AR + + + G G+ G R GGA G P PGG RG GG Sbjct: 259 PTP-PGGARPSTSSRSGGGRGRGGGGGAGPRGGGAGGGAPRTGFGGRPGGG---RGRGG 313
>SURE_XANCP (Q8P9Y7) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -2 Query: 119 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 15 TR G R P VP+ P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQNDPRGRTVYWIGPAGPEQDA 212
>SURE_XANC8 (Q4UTP8) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -2 Query: 119 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 15 TR G R P VP+ P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQNDPRGRTVYWIGPAGPEQDA 212
>ATI2_HHV1F (P08314) Alpha trans-inducing factor 77 kDa protein| Length = 715 Score = 29.3 bits (64), Expect = 5.5 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Frame = -2 Query: 212 AGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGA---------SRGWPAVPK 75 AGP PD D+ARG + G G F G + A RG PAVP+ Sbjct: 434 AGPPPD-DMARGPGGHRAGGGTVGKRFSGPARQRAPAPPPTSPTLDPRGHPAVPE 487
>MPR_BACSU (P39790) Extracellular metalloprotease precursor (EC 3.4.21.-)| Length = 313 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = -2 Query: 176 AAAQKKGEGKPHSSFDGT-------WTRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESE 18 AA + G P+ ++ GT WT S + + A+ PG V W G S Sbjct: 161 AAPGRNGSSYPYGTYSGTMFYSVKGWTESKDTNYDYGAIKLNGSPGNTVGWYGYRTTNSS 220 Query: 17 S 15 S Sbjct: 221 S 221
>T53G5_HUMAN (Q9Y2B4) TP53-target gene 5 protein (TP53-inducible gene 5 protein)| Length = 290 Score = 29.3 bits (64), Expect = 5.5 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -2 Query: 131 DGTWTRSGGASRGW 90 D TWTR+ GASRGW Sbjct: 258 DVTWTRARGASRGW 271
>KLF14_HUMAN (Q8TD94) Krueppel-like factor 14 (Transcription factor BTEB5)| (Basic transcription element-binding protein 5) (BTE-binding protein 5) Length = 323 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 200 PDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGG 57 PDP+ A GAA + G P S+ G + P VP P G Sbjct: 30 PDPEGAGGAAGSEVGAAHPESALPGPGPSGPASVPQLPQVPAPSPGAG 77
>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)| Length = 3461 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +3 Query: 270 VPKTPPELLCVAPGLAVPLFNAATTASGRGAHINTGSWAQVV*GEGGPGQAAHSSHVA 443 +P T + +AP N TA+ RG I + AQ + +G P +A SH+A Sbjct: 137 LPTTNLSFVWIAPPAGTGCVNFMATATHRGQVIFKDALAQQLCEQGAPTEATAYSHLA 194
>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)| Length = 3462 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +3 Query: 270 VPKTPPELLCVAPGLAVPLFNAATTASGRGAHINTGSWAQVV*GEGGPGQAAHSSHVA 443 +P T + +AP N TA+ RG I + AQ + +G P +A SH+A Sbjct: 138 LPTTNLSFVWIAPPAGTGCVNFMATATHRGQVIFKDALAQQLCEQGAPTEATAYSHLA 195
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Frame = -3 Query: 346 AVVAALKRGTAS--------PGATQSNSGGVFGTTN 263 A AA+ RGT S PG+T S +GG GTT+ Sbjct: 277 AAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS 312
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Frame = -3 Query: 346 AVVAALKRGTAS--------PGATQSNSGGVFGTTN 263 A AA+ RGT S PG+T S +GG GTT+ Sbjct: 277 AAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS 312
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Frame = -3 Query: 346 AVVAALKRGTAS--------PGATQSNSGGVFGTTN 263 A AA+ RGT S PG+T S +GG GTT+ Sbjct: 277 AAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS 312
>EAN57_HUMAN (O43247) Protein EAN57| Length = 280 Score = 28.5 bits (62), Expect = 9.4 Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 1/94 (1%) Frame = +3 Query: 192 GIWIGTCHSFLSPPRRPPCASRGVLVVPKTPPELLCVAPGLAVPLFNAATTASGRGAHIN 371 G +G CH PP P ASR L + L NA + +S R Sbjct: 60 GSSLGQCHLKEIPPPPPTAASRDSLGMDPQSRSLK-----------NAGSRSSSRENRAT 108 Query: 372 TGSWAQVV*G-EGGPGQAAHSSHVAPANLGAALV 470 +G AQ G + GP A P N +++ Sbjct: 109 SGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSII 142
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -2 Query: 158 GEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGGR 27 G+G + G W + GG +G P+++ GG +G GG+ Sbjct: 248 GQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQ 291
>KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppressor of ras)| (mKSR1) (Hb protein) Length = 873 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +3 Query: 213 HSFLSPPRRPPCASRGVLVVPKTPP 287 HSF++PP P L P+TPP Sbjct: 252 HSFITPPTTPQLRRHAKLKPPRTPP 276
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/64 (29%), Positives = 23/64 (35%) Frame = -2 Query: 218 GVAGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRG 39 G GP G Q + +G S G R GG R PA+ P G + R Sbjct: 216 GQGGPAERAPRPGGRGGQPRPQGGSRSQQSGGQERQGGGRRPSPAMMPTHPNPGQMPSRS 275 Query: 38 CGGR 27 G R Sbjct: 276 NGSR 279
>CEAC_ECOLI (P00645) Cloacin (EC 3.1.-.-) (Ribonuclease)| Length = 561 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 328 KRGTASPGATQSNSGGVFGTTNTP 257 K G +S G T NSG +GTT+TP Sbjct: 31 KGGPSSGGGTDPNSGPGWGTTHTP 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,518,676 Number of Sequences: 219361 Number of extensions: 997384 Number of successful extensions: 3419 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3412 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
