ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-ga... 48 6e-06
2GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-ga... 45 4e-05
3GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-ga... 44 1e-04
4GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-ga... 39 0.003
5GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-ga... 37 0.018
6GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-ga... 28 5.0
7GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-ga... 28 6.5

>GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-gated ion channel|
           3.4) (AtGLR4)
          Length = 959

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 112 RPSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           RPS V VGALFTYDS IGRAA+ A++ A+DDV
Sbjct: 57  RPSSVNVGALFTYDSFIGRAAKPAVKAAMDDV 88



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>GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-gated ion channel|
           3.5) (Ionotropic glutamate receptor GLR6)
          Length = 953

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +1

Query: 115 PSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           PS V VGALFTYDS IGRAA+LA   A++D+
Sbjct: 45  PSSVNVGALFTYDSFIGRAAKLAFVAAIEDI 75



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>GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-gated ion channel|
           3.7) (Ionotropic glutamate receptor GLR5)
          Length = 921

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = +1

Query: 112 RPSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           RP  V +GA+F +DSVIGRAA++A+E AV DV
Sbjct: 27  RPQLVNIGAVFAFDSVIGRAAKVALEAAVSDV 58



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>GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-gated ion channel|
           3.3)
          Length = 933

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +1

Query: 112 RPSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           +P  V +G++F++DSVIG+ A++AI+ AV DV
Sbjct: 25  KPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDV 56



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>GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-gated ion channel|
           3.6)
          Length = 903

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 14/32 (43%), Positives = 26/32 (81%)
 Frame = +1

Query: 112 RPSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           RP  V +G++FT++S+IG+  ++A++ AV+DV
Sbjct: 26  RPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDV 57



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>GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-gated ion channel|
           3.1) (AtGLR2)
          Length = 921

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 112 RPSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           RP  + VGA+F  +++ G  A +A + A +DV
Sbjct: 26  RPPVIKVGAIFGLNTMYGETANIAFKAAEEDV 57



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>GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-gated ion channel|
           3.2) (AtGluR2)
          Length = 912

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 106 GPRPSEVAVGALFTYDSVIGRAARLAIELAVDDV 207
           G RP  V VGA+F+  ++ G    +A++ A +DV
Sbjct: 24  GLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDV 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,151,831
Number of Sequences: 219361
Number of extensions: 144658
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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