ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 100 3e-18
2dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 100 3e-18
3dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic D... 100 3e-18
4ref|NM_194213.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-06
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
6dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
7dbj|AK122009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 46 0.043
9gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.17
10gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.67
11gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.67
12emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 0.67
13gb|AY069953.1| Hordeum vulgare APETALA2-like protein (AP2L1) mRN... 42 0.67
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.67
15gb|AF166333.1|AF166333 Myxococcus xanthus histidine protein kina... 42 0.67
16emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 0.67
17ref|XM_467870.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
18ref|NM_191909.1| Oryza sativa (japonica cultivar-group), predic... 40 2.6
19ref|XM_478702.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
20ref|XM_475078.1| Oryza sativa (japonica cultivar-group), predic... 40 2.6
21ref|XM_473186.1| Oryza sativa (japonica cultivar-group), predic... 40 2.6
22gb|AY540995.1| Achromobacter xylosoxidans subsp. denitrificans s... 40 2.6
23gb|AY331258.1| Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB... 40 2.6
24gb|BC036819.1| Homo sapiens tubulin tyrosine ligase, mRNA (cDNA ... 40 2.6
25emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete ch... 40 2.6
26gb|AF029344.2| Burkholderia cepacia putative transcription facto... 40 2.6
27gb|AY342322.1| Oryza sativa (japonica cultivar-group) monosaccha... 40 2.6
28emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on ch... 40 2.6
29emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 40 2.6
30gb|AE005711.1| Caulobacter crescentus CB15 section 37 of 359 of ... 40 2.6
31gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 2.6
32gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 2.6
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
36gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.6
37gb|AC012442.7| Homo sapiens BAC clone RP11-1I24 from 2, complete... 40 2.6
38dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
39dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
40dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 2.6
41dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
42dbj|AK106443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.6
43emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 i... 40 2.6
44gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, com... 40 2.6
45gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                            
Query: 96       ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 155
                ||||||||| |||  ||| |||||||||||  |  | |||||||||| ||||||||||||
Sbjct: 27962064 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 27962123

                                                                      
Query: 156      cgtcattggccgcgcggcgcggctcgccatcgagcttgccgtcgacgacgtcaa 209
                 || ||||| ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 27962124 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaa 27962177



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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0547F09
          Length = 140615

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                        
Query: 96   ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 155
            ||||||||| |||  ||| |||||||||||  |  | |||||||||| ||||||||||||
Sbjct: 6883 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 6942

                                                                  
Query: 156  cgtcattggccgcgcggcgcggctcgccatcgagcttgccgtcgacgacgtcaa 209
             || ||||| ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 6943 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaa 6996



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>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0003H08
          Length = 142068

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                          
Query: 96     ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 155
              ||||||||| |||  ||| |||||||||||  |  | |||||||||| ||||||||||||
Sbjct: 115987 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 116046

                                                                    
Query: 156    cgtcattggccgcgcggcgcggctcgccatcgagcttgccgtcgacgacgtcaa 209
               || ||||| ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 116047 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaa 116100



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>ref|NM_194213.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2868

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 133 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctt 192
           |||||||||||||||| |||||||||||| ||  | |||||   | ||||||||||||| 
Sbjct: 100 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 159

                         
Query: 193 gccgtcgacgacgt 206
           ||||||| ||||||
Sbjct: 160 gccgtcgccgacgt 173



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                          
Query: 133    ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctt 192
              |||||||||||||||| |||||||||||| ||  | |||||   | ||||||||||||| 
Sbjct: 190667 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 190726

                            
Query: 193    gccgtcgacgacgt 206
              ||||||| ||||||
Sbjct: 190727 gccgtcgccgacgt 190740



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 125      tcgccgtgggcgcgctcttc 144
                ||||||||||||||||||||
Sbjct: 22300726 tcgccgtgggcgcgctcttc 22300707



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>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0446F04
          Length = 175390

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 133   ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctt 192
             |||||||||||||||| |||||||||||| ||  | |||||   | ||||||||||||| 
Sbjct: 25531 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 25590

                           
Query: 193   gccgtcgacgacgt 206
             ||||||| ||||||
Sbjct: 25591 gccgtcgccgacgt 25604



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>dbj|AK122009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111F13, full
           insert sequence
          Length = 3648

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 133 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctt 192
           |||||||||||||||| |||||||||||| ||  | |||||   | ||||||||||||| 
Sbjct: 616 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 675

                         
Query: 193 gccgtcgacgacgt 206
           ||||||| ||||||
Sbjct: 676 gccgtcgccgacgt 689



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 73      gccgcggcgagggcggtcaccgc 95
               |||||||||||||||||||||||
Sbjct: 4139603 gccgcggcgagggcggtcaccgc 4139625



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 70      gccgccgcggcgagggcggtcaccgc 95
               ||||||||||||||| ||||||||||
Sbjct: 1005387 gccgccgcggcgaggtcggtcaccgc 1005412



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>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
            complete sequence
          Length = 146303

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 94   gcggcgggggccgggccgcgt 114
            |||||||||||||||||||||
Sbjct: 4951 gcggcgggggccgggccgcgt 4971



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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     gcggcgggggccgggccgcgt 114
              |||||||||||||||||||||
Sbjct: 122773 gcggcgggggccgggccgcgt 122793



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 180    cgccatcgagcttgccgtcga 200
              |||||||||||||||||||||
Sbjct: 612539 cgccatcgagcttgccgtcga 612559



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>gb|AY069953.1| Hordeum vulgare APETALA2-like protein (AP2L1) mRNA, complete cds
          Length = 1815

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 103 gccgggccgcgtccgagcgaggtcg 127
           |||| ||||||||||||||||||||
Sbjct: 180 gccgtgccgcgtccgagcgaggtcg 156



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 94       gcggcgggggccgggccgcgt 114
                |||||||||||||||||||||
Sbjct: 19200875 gcggcgggggccgggccgcgt 19200895



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     cgccgccgcggcgagggcgg 88
              ||||||||||||||||||||
Sbjct: 683414 cgccgccgcggcgagggcgg 683395



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>gb|AF166333.1|AF166333 Myxococcus xanthus histidine protein kinase AsgD (asgD) gene,
            complete cds
          Length = 3080

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 90   caccgcggcgggggccgggccgcgt 114
            |||||||||||| ||||||||||||
Sbjct: 3007 caccgcggcgggtgccgggccgcgt 3031



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     gcgaggtcgccgtgggcgcgc 139
               |||||||||||||||||||||
Sbjct: 3212913 gcgaggtcgccgtgggcgcgc 3212893



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>ref|XM_467870.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 387

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cgccatcgagcttgccgtcg 199
           ||||||||||||||||||||
Sbjct: 211 cgccatcgagcttgccgtcg 192



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>ref|NM_191909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 525

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 cgccatcgagcttgccgtcg 199
           ||||||||||||||||||||
Sbjct: 28  cgccatcgagcttgccgtcg 47



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>ref|XM_478702.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1593

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 tcgccgtgggcgcgctcttc 144
           ||||||||||||||||||||
Sbjct: 650 tcgccgtgggcgcgctcttc 669



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>ref|XM_475078.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2535

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   cgccgccgcggcgagggcgg 88
            ||||||||||||||||||||
Sbjct: 1615 cgccgccgcggcgagggcgg 1596



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>ref|XM_473186.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 69 cgccgccgcggcgagggcgg 88
          ||||||||||||||||||||
Sbjct: 63 cgccgccgcggcgagggcgg 44



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>gb|AY540995.1| Achromobacter xylosoxidans subsp. denitrificans strain EST4002 plasmid
             pEST4011, complete sequence
          Length = 76958

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ccgcgcggcgcggctcgcca 184
             ||||||||||||||||||||
Sbjct: 45177 ccgcgcggcgcggctcgcca 45196



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>gb|AY331258.1| Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB), ORFC (orfC), ORFD
            (orfD), ORFE (orfE), ORFF (orfF), ORFG (orfG), ORFH
            (orfH), LinX1 (linX1), LinX2 (linX2), and LinA (linA)
            genes, complete cds; insertion sequence IS6100A, complete
            sequence; ORFJ' (orfJ') and ORFK (orfK) genes, complete
            cds; insertion sequence IS6100B, complete sequence; LinC
            (linC) gene, complete cds; insertion sequence IS6100C,
            complete sequence; and 'ORFN ('orfN), ORFO (orfO), ORFP
            (orfP), ORFQ (orfQ), ORFR (orfR), ORFS (orfS), ORFT
            (orfT), ORFU (orfU), ORFV (orfV), ORFW (orfW), ORFX
            (orfX), and ORFY (orfY) genes, complete cds
          Length = 41034

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   ccttgctcgccgccgcggcg 81
            ||||||||||||||||||||
Sbjct: 2802 ccttgctcgccgccgcggcg 2783



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>gb|BC036819.1| Homo sapiens tubulin tyrosine ligase, mRNA (cDNA clone MGC:46235
           IMAGE:5767758), complete cds
          Length = 2070

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  gcggcgggggccgggccgcg 113
           ||||||||||||||||||||
Sbjct: 78  gcggcgggggccgggccgcg 97



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>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12
          Length = 300000

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 cgagcttgccgtcgacgacg 205
           ||||||||||||||||||||
Sbjct: 553 cgagcttgccgtcgacgacg 534



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>gb|AF029344.2| Burkholderia cepacia putative transcription factor, malonate
            decarboxylase epsilon-subunit (mdcH), MdcB (mdcB), MdcG
            (mdcG), malonate decarboxylase gamma-subunit (mdcE),
            malonate decarboxylase beta-subunit (mdcD), malonate
            decarboxylase delta-subunit (mdcC), malonate
            decarboxylase alpha-subunit (mdcA), proline
            dehydrogenase/pyrroline-5-carboxylate dehydrogenase
            bifunctional protein (putA), leucine-responsive
            regulatory protein (lrp), chloride-channel protein,
            chloromuconate cycloisomerase (tfdD), indole acetamide
            hydrolase (iaaH), LysR-type transcription factor (tfdR),
            chlorocatechol 1,2-dioxygenase (tfdC), dienelactone
            hydrolase (tfdE), 2,4-dichlorophenol hydroxylase (tfdB),
            putative transport protein (tfdK),
            2,4-D/alpha-ketoglutarate dioxygenase (tfdA),
            maleylacetate reductase (tfdF), and putative transposase
            genes, complete cds; and unknown genes
          Length = 36642

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  ccgcgcggcgcggctcgcca 184
            ||||||||||||||||||||
Sbjct: 9967 ccgcgcggcgcggctcgcca 9948



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>gb|AY342322.1| Oryza sativa (japonica cultivar-group) monosaccharide transporter 6
           (MST6) mRNA, complete cds
          Length = 1590

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 tcgccgtgggcgcgctcttc 144
           ||||||||||||||||||||
Sbjct: 650 tcgccgtgggcgcgctcttc 669



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>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the
             5' end of the SMARCA2 gene for SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a member 2 (SNF2LA), a novel gene and two CpG
             islands, complete sequence
          Length = 138859

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gcggcgggggccgggccgcg 113
             ||||||||||||||||||||
Sbjct: 10098 gcggcgggggccgggccgcg 10117



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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
             complete sequence
          Length = 139080

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    cgccgccgcggcgagggcgg 88
             ||||||||||||||||||||
Sbjct: 51273 cgccgccgcggcgagggcgg 51254



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>gb|AE005711.1| Caulobacter crescentus CB15 section 37 of 359 of the complete genome
          Length = 10738

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gagcttgccgtcgacgacgt 206
             ||||||||||||||||||||
Sbjct: 10334 gagcttgccgtcgacgacgt 10315



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    cgagcttgccgtcgacgacg 205
              ||||||||||||||||||||
Sbjct: 527255 cgagcttgccgtcgacgacg 527236



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 69      cgccgccgcggcgagggcgg 88
               ||||||||||||||||||||
Sbjct: 3307734 cgccgccgcggcgagggcgg 3307715



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 69       cgccgccgcggcgagggcgg 88
                ||||||||||||||||||||
Sbjct: 25833863 cgccgccgcggcgagggcgg 25833844



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      cgccatcgagcttgccgtcg 199
                ||||||||||||||||||||
Sbjct: 31828593 cgccatcgagcttgccgtcg 31828612



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      cgccatcgagcttgccgtcg 199
                ||||||||||||||||||||
Sbjct: 27201661 cgccatcgagcttgccgtcg 27201680



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      gcggcgggggccgggccgcg 113
               ||||||||||||||||||||
Sbjct: 2533868 gcggcgggggccgggccgcg 2533887



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>gb|AC012442.7| Homo sapiens BAC clone RP11-1I24 from 2, complete sequence
          Length = 173040

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gcggcgggggccgggccgcg 113
             ||||||||||||||||||||
Sbjct: 35663 gcggcgggggccgggccgcg 35682



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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0567H04
          Length = 181420

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    tcgccgtgggcgcgctcttc 144
              ||||||||||||||||||||
Sbjct: 105972 tcgccgtgggcgcgctcttc 105953



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>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0003E08
          Length = 135014

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cgccatcgagcttgccgtcg 199
              ||||||||||||||||||||
Sbjct: 109339 cgccatcgagcttgccgtcg 109358



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    catcgagcttgccgtcgacg 202
              ||||||||||||||||||||
Sbjct: 732787 catcgagcttgccgtcgacg 732806



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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cgccatcgagcttgccgtcg 199
              ||||||||||||||||||||
Sbjct: 124391 cgccatcgagcttgccgtcg 124410



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>dbj|AK106443.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D12, full
            insert sequence
          Length = 2781

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   cgccgccgcggcgagggcgg 88
            ||||||||||||||||||||
Sbjct: 1730 cgccgccgcggcgagggcgg 1711



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>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14,
             complete sequence
          Length = 221928

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   gggccgggccgcgtccgagc 120
             ||||||||||||||||||||
Sbjct: 86032 gggccgggccgcgtccgagc 86051



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>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence
          Length = 99448

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ccgcgcggcgcggctcgcca 184
             ||||||||||||||||||||
Sbjct: 70954 ccgcgcggcgcggctcgcca 70935



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>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0041A22, complete sequence
          Length = 117919

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    cgccgccgcggcgagggcgg 88
             ||||||||||||||||||||
Sbjct: 28613 cgccgccgcggcgagggcgg 28594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,350,641
Number of Sequences: 3902068
Number of extensions: 1350641
Number of successful extensions: 137295
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131437
Number of HSP's gapped (non-prelim): 5850
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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