>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 44) (DIS3 protein homolog)
          Length = 958

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 12/88 (13%)
 Frame = +2

Query: 182 MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXX------------XXXXX 325
           ML+SK+F+KKT+ G V+K+VREHYLRDDI CGA  C +C                     
Sbjct: 1   MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVC 60

Query: 326 XXXXILVVDTNVVLHQIDLLENPAIEDV 409
                L+ DTNV+LHQID+LE+PAI +V
Sbjct: 61  PQPHYLLPDTNVLLHQIDVLEDPAIRNV 88

>RRP44_YEAST (Q08162) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 44) (Protein DIS3)
          Length = 1001

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
 Frame = +2

Query: 194 KSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSC------------------XXXXXXX 319
           K FV+ ++ G   K+VREHYLR DIPC + SC  C                         
Sbjct: 22  KVFVR-SRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLELS 80

Query: 320 XXXXXXILVVDTNVVLHQIDLLENP 394
                  +V+DTNVVL  IDLLENP
Sbjct: 81  APIGKHYVVLDTNVVLQAIDLLENP 105

>DIS3_SCHPO (P37202) Mitotic control protein dis3|
          Length = 970

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
 Frame = +2

Query: 188 QSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXX-----------------XX 316
           + + FV+ T+ G+V KVVRE YLR+DIPC + +CP C                       
Sbjct: 18  RDRVFVRATR-GKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMF 76

Query: 317 XXXXXXXILVVDTNVVLHQIDLLENP 394
                   L+ D+N+  H ID LE+P
Sbjct: 77  LEKFGHHYLIPDSNIFYHCIDALEHP 102

>RRP44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC 3.1.13.-)|
           (Ribosomal RNA-processing protein 44) (DIS3 protein
           homolog)
          Length = 1029

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
 Frame = +2

Query: 209 KTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXX----------XXXXXXXXILVVDTN 358
           + + G+V K   E YLR+D+ CG   C +C                        L+VD+ 
Sbjct: 21  QNRSGKVYKRAEERYLRNDLSCGLAQCGTCKDFGTNPLLKIENPVRNAKVGRHALIVDST 80

Query: 359 VVLHQIDLLENPAIEDV 409
            ++   DL ++  + D+
Sbjct: 81  SLIRFYDLFDSSLLRDL 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,776,587
Number of Sequences: 219361
Number of extensions: 218015
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)