ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493810.1| Oryza sativa (japonica cultivar-group), predic... 117 3e-23
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 6e-12
3gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome... 80 6e-12
4gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome... 80 6e-12
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
6dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
7gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 46 0.089
8ref|XM_483293.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.35
9ref|XM_464517.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.35
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
12dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
13dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
14dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
15dbj|AK101254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
16gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 1.4
17emb|CR858618.1| Pongo pygmaeus mRNA; cDNA DKFZp469O078 (from clo... 42 1.4
18gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.4
19ref|XM_311345.2| Anopheles gambiae str. PEST ENSANGP00000021380 ... 42 1.4
20ref|XM_464352.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
21ref|XM_450948.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
22ref|NM_190495.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
23ref|XM_469367.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
24gb|AY022688.1| Oryza sativa microsatellite MRG5013 containing (C... 40 5.5
25gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
26gb|AY731551.1| Arachis hypogaea clone PM736 microsatellite sequence 40 5.5
27gb|AC122254.4| Mus musculus BAC clone RP23-171M24 from 3, comple... 40 5.5
28emb|AJ717426.1| Pseudomonas chlororaphis partial rpoB gene for D... 40 5.5
29gb|AC125408.3| Mus musculus BAC clone RP23-94M23 from 3, complet... 40 5.5
30emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chr... 40 5.5
31emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercon... 40 5.5
32gb|AC118554.2| Homo sapiens chromosome 1 clone RP11-61E2, comple... 40 5.5
33ref|NM_142989.3| Drosophila melanogaster Dis3 CG6413-RA (Dis3), ... 40 5.5
34gb|AY052150.1| Drosophila melanogaster SD10981 full length cDNA 40 5.5
35gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.5
36dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
38gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
41gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, r... 40 5.5
42gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genom... 40 5.5
43dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
46dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49dbj|AK105847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
50emb|AJ336802.1|HSA336802 Homo sapiens genomic sequence surroundi... 40 5.5
51dbj|AK099128.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
52ref|NM_210184.1| Eremothecium gossypii AEL031Cp (AEL031C), mRNA 40 5.5
53dbj|AK061228.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
54dbj|AK058834.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
55gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85... 40 5.5
56gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.5
57gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
58gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
59emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584... 40 5.5
60emb|AJ276897.1|DME276897 Drosophila melanogaster mRNA for putati... 40 5.5
61dbj|AB026566.1| Oryza sativa (japonica cultivar-group) OsPBD1 mR... 40 5.5 
>ref|XM_493810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2727

 Score =  117 bits (59), Expect = 3e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                       
Query: 338 atcctcgtcgtcgacaccaacgtcgtgctccaccagatcgatttgttggagaatccggcg 397
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 157 atcctcgtcgtcgacaccaacgtcgtgctccaccagatcgatttgctggagaatccagcg 216

                      
Query: 398 attgaggatgt 408
           ||||| |||||
Sbjct: 217 attgacgatgt 227



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                       
Query: 186 tgcagagcaagtcgttcgtcaagaagacgaagcagggccgcgtcgtcaaggtggtccggg 245
           ||||||||||| | ||||| |||||||||| |   |||||||||   ||||||||| |||
Sbjct: 5   tgcagagcaagaccttcgtgaagaagacgagggcaggccgcgtccagaaggtggtcaggg 64

                                                       
Query: 246 agcactacctccgcgacgacatcccctgcggcgccttctcctgc 289
           ||||||||||||||||||||||| |||||||||||  |||||||
Sbjct: 65  agcactacctccgcgacgacatctcctgcggcgccgcctcctgc 108
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                       
Query: 234     aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 289
               |||||||| |||||||||||||||||||||||||| |||||||||||  |||||||
Sbjct: 1640988 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 1640933



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                   
Query: 338     atcctcgtcgtcgacaccaacgtcgtgctccaccag 373
               ||||||||||||||||||||||||||||||||||||
Sbjct: 1640884 atcctcgtcgtcgacaccaacgtcgtgctccaccag 1640849



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 371     cagatcgatttgttggagaatccggcgattgaggatgt 408
               |||||||||||| |||||||||| |||||||| |||||
Sbjct: 1640772 cagatcgatttgctggagaatccagcgattgacgatgt 1640735



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 74       ctccttcaccgccgccgccgcca 96
                |||||||||||||||||||||||
Sbjct: 31136646 ctccttcaccgccgccgccgcca 31136624



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 72       cactccttcaccgccgccgccgcc 95
                |||||| |||||||||||||||||
Sbjct: 27569541 cactccatcaccgccgccgccgcc 27569564



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 76      ccttcaccgccgccgccgcc 95
               ||||||||||||||||||||
Sbjct: 2397084 ccttcaccgccgccgccgcc 2397103



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                               
Query: 168     ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 215
               |||| |||||| | ||| ||||||||||| | ||||| ||||||||||
Sbjct: 1641139 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 1641092
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>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 234   aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 289
             |||||||| |||||||||||||||||||||||||| |||||||||||  |||||||
Sbjct: 48434 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 48379



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                 
Query: 338   atcctcgtcgtcgacaccaacgtcgtgctccaccag 373
             ||||||||||||||||||||||||||||||||||||
Sbjct: 48330 atcctcgtcgtcgacaccaacgtcgtgctccaccag 48295



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 371   cagatcgatttgttggagaatccggcgattgaggatgt 408
             |||||||||||| |||||||||| |||||||| |||||
Sbjct: 48218 cagatcgatttgctggagaatccagcgattgacgatgt 48181



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 168   ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 215
             |||| |||||| | ||| ||||||||||| | ||||| ||||||||||
Sbjct: 48585 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 48538
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>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
              complete sequence
          Length = 127098

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                      
Query: 234    aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 289
              |||||||| |||||||||||||||||||||||||| |||||||||||  |||||||
Sbjct: 120549 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 120494



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                  
Query: 338    atcctcgtcgtcgacaccaacgtcgtgctccaccag 373
              ||||||||||||||||||||||||||||||||||||
Sbjct: 120445 atcctcgtcgtcgacaccaacgtcgtgctccaccag 120410



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 371    cagatcgatttgttggagaatccggcgattgaggatgt 408
              |||||||||||| |||||||||| |||||||| |||||
Sbjct: 120333 cagatcgatttgctggagaatccagcgattgacgatgt 120296



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                              
Query: 168    ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 215
              |||| |||||| | ||| ||||||||||| | ||||| ||||||||||
Sbjct: 120700 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 120653
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                       
Query: 234     aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 289
               |||||||| |||||||||||||||||||||||||| |||||||||||  |||||||
Sbjct: 1640986 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 1640931



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                   
Query: 338     atcctcgtcgtcgacaccaacgtcgtgctccaccag 373
               ||||||||||||||||||||||||||||||||||||
Sbjct: 1640882 atcctcgtcgtcgacaccaacgtcgtgctccaccag 1640847



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 371     cagatcgatttgttggagaatccggcgattgaggatgt 408
               |||||||||||| |||||||||| |||||||| |||||
Sbjct: 1640770 cagatcgatttgctggagaatccagcgattgacgatgt 1640733



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 74       ctccttcaccgccgccgccgcca 96
                |||||||||||||||||||||||
Sbjct: 31227169 ctccttcaccgccgccgccgcca 31227147



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 72       cactccttcaccgccgccgccgcc 95
                |||||| |||||||||||||||||
Sbjct: 27660864 cactccatcaccgccgccgccgcc 27660887



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 76      ccttcaccgccgccgccgcc 95
               ||||||||||||||||||||
Sbjct: 2397194 ccttcaccgccgccgccgcc 2397213



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                               
Query: 168     ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 215
               |||| |||||| | ||| ||||||||||| | ||||| ||||||||||
Sbjct: 1641137 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 1641090
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 234   aggtggtccgggagcactacctccgcgacgacatcccctgcggcgccttctcctgc 289
             |||||||| |||||||||||||||||||||||||| |||||||||||  |||||||
Sbjct: 53451 aggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgc 53396



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                 
Query: 338   atcctcgtcgtcgacaccaacgtcgtgctccaccag 373
             ||||||||||||||||||||||||||||||||||||
Sbjct: 53347 atcctcgtcgtcgacaccaacgtcgtgctccaccag 53312



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 371   cagatcgatttgttggagaatccggcgattgaggatgt 408
             |||||||||||| |||||||||| |||||||| |||||
Sbjct: 53235 cagatcgatttgctggagaatccagcgattgacgatgt 53198



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 168   ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 215
             |||| |||||| | ||| ||||||||||| | ||||| ||||||||||
Sbjct: 53602 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 53555
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 74    ctccttcaccgccgccgccgcca 96
             |||||||||||||||||||||||
Sbjct: 57287 ctccttcaccgccgccgccgcca 57265
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>ref|XM_483293.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2519

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 74  ctccttcaccgccgccgccgcc 95
           ||||||||||||||||||||||
Sbjct: 673 ctccttcaccgccgccgccgcc 652
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>ref|XM_464517.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 477

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 74  ctccttcaccgccgccgccgcc 95
           ||||||||||||||||||||||
Sbjct: 115 ctccttcaccgccgccgccgcc 136
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 74       ctccttcaccgccgccgccgcc 95
                ||||||||||||||||||||||
Sbjct: 25321267 ctccttcaccgccgccgccgcc 25321288



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 71      tcactccttcaccgccgccg 90
               ||||||||||||||||||||
Sbjct: 5343649 tcactccttcaccgccgccg 5343668
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 74       ctccttcaccgccgccgccgcc 95
                ||||||||||||||||||||||
Sbjct: 27759202 ctccttcaccgccgccgccgcc 27759223



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 74      ctccttcaccgccgccgccgcc 95
               ||||||||||||||||||||||
Sbjct: 5652384 ctccttcaccgccgccgccgcc 5652405
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    ctccttcaccgccgccgccgcc 95
             ||||||||||||||||||||||
Sbjct: 44535 ctccttcaccgccgccgccgcc 44556
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    ctccttcaccgccgccgccgcc 95
             ||||||||||||||||||||||
Sbjct: 80120 ctccttcaccgccgccgccgcc 80141
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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    ctccttcaccgccgccgccgcc 95
             ||||||||||||||||||||||
Sbjct: 96452 ctccttcaccgccgccgccgcc 96473
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>dbj|AK101254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F20, full
           insert sequence
          Length = 2519

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 74  ctccttcaccgccgccgccgcc 95
           ||||||||||||||||||||||
Sbjct: 673 ctccttcaccgccgccgccgcc 652
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    gccttctcctgcccctcctgc 298
              |||||||||||||||||||||
Sbjct: 825987 gccttctcctgcccctcctgc 825967
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>emb|CR858618.1| Pongo pygmaeus mRNA; cDNA DKFZp469O078 (from clone DKFZp469O078)
          Length = 4398

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 67 cgcttcactccttcaccgccgccgccgcc 95
          |||||||||||| | ||||||||||||||
Sbjct: 77 cgcttcactcctcctccgccgccgccgcc 49
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 342     tcgtcgtcgacaccaacgtcgtgctccac 370
               ||||| |||||||||||||| ||||||||
Sbjct: 1806149 tcgtcctcgacaccaacgtcctgctccac 1806177
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>ref|XM_311345.2| Anopheles gambiae str. PEST ENSANGP00000021380
           (ENSANGG00000018891), partial mRNA
          Length = 969

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 gagctcgccaagatgctgcag 190
           |||||||||||||||||||||
Sbjct: 253 gagctcgccaagatgctgcag 273
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>ref|XM_464352.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1698

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 76  ccttcaccgccgccgccgcc 95
           ||||||||||||||||||||
Sbjct: 413 ccttcaccgccgccgccgcc 432
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>ref|XM_450948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  ccttcaccgccgccgccgcc 95
           ||||||||||||||||||||
Sbjct: 995 ccttcaccgccgccgccgcc 976
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>ref|NM_190495.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  ccttcaccgccgccgccgcc 95
           ||||||||||||||||||||
Sbjct: 142 ccttcaccgccgccgccgcc 123
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>ref|XM_469367.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 72 cactccttcaccgccgccgccgcc 95
          |||||| |||||||||||||||||
Sbjct: 84 cactccatcaccgccgccgccgcc 61
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>gb|AY022688.1| Oryza sativa microsatellite MRG5013 containing (CCG)X8, genomic
           sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 168 ccgagctcgccaagatgctgcagagcaagtcgttcgtcaagaagacga 215
           |||| |||||| | ||| ||||||||||| | ||||| ||||||||||
Sbjct: 139 ccgacctcgccgacatgttgcagagcaagaccttcgtgaagaagacga 186
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>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    ccttcaccgccgccgccgcc 95
             ||||||||||||||||||||
Sbjct: 24048 ccttcaccgccgccgccgcc 24067
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>gb|AY731551.1| Arachis hypogaea clone PM736 microsatellite sequence
          Length = 350

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 68  gcttcactccttcaccgccgccgccgcc 95
           ||||||||||| | ||||||||||||||
Sbjct: 239 gcttcactcctccgccgccgccgccgcc 212
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>gb|AC122254.4| Mus musculus BAC clone RP23-171M24 from 3, complete sequence
          Length = 198281

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ccttctcctgcccctcctgc 298
            ||||||||||||||||||||
Sbjct: 1396 ccttctcctgcccctcctgc 1377
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>emb|AJ717426.1| Pseudomonas chlororaphis partial rpoB gene for DNA-directed RNA
           polymerase beta chain, strain LMG 1245T
          Length = 1166

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  actccttcaccgccgccgcc 92
           ||||||||||||||||||||
Sbjct: 109 actccttcaccgccgccgcc 90
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>gb|AC125408.3| Mus musculus BAC clone RP23-94M23 from 3, complete sequence
          Length = 210519

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    ccttctcctgcccctcctgc 298
              ||||||||||||||||||||
Sbjct: 107182 ccttctcctgcccctcctgc 107201
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>emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chromosome 6q25.2-26
             Contains part of a novel gene, a signal recognition
             particle 72kD (SRP72) pseudogene and three CpG islands,
             complete sequence
          Length = 100732

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    ccttcaccgccgccgccgcc 95
             ||||||||||||||||||||
Sbjct: 64320 ccttcaccgccgccgccgcc 64339
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>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3
          Length = 345637

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ctagacgaccacggcacgca 51
             ||||||||||||||||||||
Sbjct: 73630 ctagacgaccacggcacgca 73649
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>gb|AC118554.2| Homo sapiens chromosome 1 clone RP11-61E2, complete sequence
          Length = 34319

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  caagatgctgcagagcaagt 197
            ||||||||||||||||||||
Sbjct: 4236 caagatgctgcagagcaagt 4217
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>ref|NM_142989.3| Drosophila melanogaster Dis3 CG6413-RA (Dis3), mRNA
          Length = 3599

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 242 cgggagcactacctccgcgacgacatcccctgcggc 277
           ||||||||||| || ||||||||||||  |||||||
Sbjct: 131 cgggagcactatctgcgcgacgacatcggctgcggc 166
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>gb|AY052150.1| Drosophila melanogaster SD10981 full length cDNA
          Length = 3129

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 242 cgggagcactacctccgcgacgacatcccctgcggc 277
           ||||||||||| || ||||||||||||  |||||||
Sbjct: 132 cgggagcactatctgcgcgacgacatcggctgcggc 167
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 232    caaggtggtccgggagcactacctccgcgacgacat 267
              ||||||||| ||||||||||| || ||| |||||||
Sbjct: 577387 caaggtggtgcgggagcactatctgcgcaacgacat 577352
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 72       cactccttcaccgccgccgccgcc 95
                ||||||||| ||||||||||||||
Sbjct: 27044769 cactccttctccgccgccgccgcc 27044792
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      ccttcaccgccgccgccgcc 95
               ||||||||||||||||||||
Sbjct: 7534053 ccttcaccgccgccgccgcc 7534034
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>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24,
              complete sequence
          Length = 150503

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     ccttcaccgccgccgccgcc 95
              ||||||||||||||||||||
Sbjct: 113926 ccttcaccgccgccgccgcc 113945
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 76       ccttcaccgccgccgccgcc 95
                ||||||||||||||||||||
Sbjct: 20869135 ccttcaccgccgccgccgcc 20869154



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 76       ccttcaccgccgccgccgcc 95
                ||||||||||||||||||||
Sbjct: 17736342 ccttcaccgccgccgccgcc 17736361
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 76       ccttcaccgccgccgccgcc 95
                ||||||||||||||||||||
Sbjct: 35881472 ccttcaccgccgccgccgcc 35881491
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>gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, region 95E-95F, BAC clone
             BACR04E17, complete sequence
          Length = 199016

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 242   cgggagcactacctccgcgacgacatcccctgcggc 277
             ||||||||||| || ||||||||||||  |||||||
Sbjct: 83009 cgggagcactatctgcgcgacgacatcggctgcggc 83044
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>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete
             sequence
          Length = 136982

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    cactccttcaccgccgccgccgcc 95
             |||||| |||||||||||||||||
Sbjct: 11238 cactccatcaccgccgccgccgcc 11261
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>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056O06
          Length = 151038

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    tcactccttcaccgccgccg 90
             ||||||||||||||||||||
Sbjct: 13460 tcactccttcaccgccgccg 13479
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     ccttcaccgccgccgccgcc 95
              ||||||||||||||||||||
Sbjct: 145930 ccttcaccgccgccgccgcc 145949
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>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0229B10
          Length = 114509

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    ccttcaccgccgccgccgcc 95
             ||||||||||||||||||||
Sbjct: 61361 ccttcaccgccgccgccgcc 61380
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>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0569E11
          Length = 157319

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     ccttcaccgccgccgccgcc 95
              ||||||||||||||||||||
Sbjct: 144164 ccttcaccgccgccgccgcc 144183
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>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0676H02
          Length = 144252

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    ccttcaccgccgccgccgcc 95
             ||||||||||||||||||||
Sbjct: 44976 ccttcaccgccgccgccgcc 44995
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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tcactccttcaccgccgccg 90
              ||||||||||||||||||||
Sbjct: 135237 tcactccttcaccgccgccg 135256
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>dbj|AK105847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G05, full
           insert sequence
          Length = 1250

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  cactccttcaccgccgccgccgcc 95
           |||||| |||||||||||||||||
Sbjct: 497 cactccatcaccgccgccgccgcc 474
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>emb|AJ336802.1|HSA336802 Homo sapiens genomic sequence surrounding NotI site, clone
          NL6-BE9RS
          Length = 755

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 76 ccttcaccgccgccgccgcc 95
          ||||||||||||||||||||
Sbjct: 70 ccttcaccgccgccgccgcc 89
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>dbj|AK099128.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041C17, full
           insert sequence
          Length = 926

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  cactccttcaccgccgccgccgcc 95
           |||||| |||||||||||||||||
Sbjct: 100 cactccatcaccgccgccgccgcc 77
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>ref|NM_210184.1| Eremothecium gossypii AEL031Cp (AEL031C), mRNA
          Length = 2994

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 232 caaggtggtccgggagcactacctccgcgacgacat 267
           ||||||||| ||||||||||| || ||| |||||||
Sbjct: 141 caaggtggtgcgggagcactatctgcgcaacgacat 176
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>dbj|AK061228.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A02, full
           insert sequence
          Length = 968

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  cactccttcaccgccgccgccgcc 95
           |||||| |||||||||||||||||
Sbjct: 139 cactccatcaccgccgccgccgcc 116
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>dbj|AK058834.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-B10, full
           insert sequence
          Length = 434

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  tcactccttcaccgccgccg 90
           ||||||||||||||||||||
Sbjct: 84  tcactccttcaccgccgccg 103
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>gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85 of 118 of the
             complete sequence
          Length = 206741

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 242   cgggagcactacctccgcgacgacatcccctgcggc 277
             ||||||||||| || ||||||||||||  |||||||
Sbjct: 83265 cgggagcactatctgcgcgacgacatcggctgcggc 83300
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ctccttcaccgccgccgccg 93
              ||||||||||||||||||||
Sbjct: 726276 ctccttcaccgccgccgccg 726257
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      ccttcaccgccgccgccgcc 95
               ||||||||||||||||||||
Sbjct: 7604139 ccttcaccgccgccgccgcc 7604120
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 72       cactccttcaccgccgccgccgcc 95
                ||||||||| ||||||||||||||
Sbjct: 26970358 cactccttctccgccgccgccgcc 26970381
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>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 131300

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     cactccttcaccgccgccgccgcc 95
              ||||||||| ||||||||||||||
Sbjct: 111468 cactccttctccgccgccgccgcc 111445
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>emb|AJ276897.1|DME276897 Drosophila melanogaster mRNA for putative exoribonuclease DIS3
          Length = 3602

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 242 cgggagcactacctccgcgacgacatcccctgcggc 277
           ||||||||||| || ||||||||||||  |||||||
Sbjct: 132 cgggagcactatctgcgcgacgacatcggctgcggc 167
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>dbj|AB026566.1| Oryza sativa (japonica cultivar-group) OsPBD1 mRNA for beta 4
           subunit of 20S proteasome, complete cds
          Length = 882

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  cactccttcaccgccgccgccgcc 95
           |||||| |||||||||||||||||
Sbjct: 128 cactccatcaccgccgccgccgcc 105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,487,346
Number of Sequences: 3902068
Number of extensions: 2487346
Number of successful extensions: 191058
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 183779
Number of HSP's gapped (non-prelim): 7278
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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