Clone Name | bastl14c04 |
---|---|
Clone Library Name | barley_pub |
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 129 bits (324), Expect = 3e-30 Identities = 65/133 (48%), Positives = 80/133 (60%), Gaps = 1/133 (0%) Frame = +2 Query: 47 PNPNVPLLTNGQMVDDIPPEQHAL-VPSFVGGGGKRIHPLPYADSNLPVQPRSMDPSKDI 223 P +PLLT G +I ++HAL VP +GG G R+HP+ +D + PR M P KD+ Sbjct: 148 PGSQIPLLTYGDEDVEISSDRHALIVPPSLGGHGNRVHPVSLSDPTVAAHPRPMVPQKDL 207 Query: 224 GSYGYGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPI 403 YGYGSVAWK+RME WK+KQ Q P+MDE RQPLSRK+PI Sbjct: 208 AVYGYGSVAWKDRMEEWKRKQNEKLQVVRHEGDPDFEDGDDADFPMMDEGRQPLSRKIPI 267 Query: 404 PSSLINPYRMIIV 442 SS INPYRM+IV Sbjct: 268 KSSKINPYRMLIV 280
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 123 bits (309), Expect = 2e-28 Identities = 71/152 (46%), Positives = 90/152 (59%), Gaps = 6/152 (3%) Frame = +2 Query: 5 GRGGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNL 184 GRGG LD P +PLLT D+ ++HAL+ G G R++P P+ DS+ Sbjct: 135 GRGG-LDSA----PPGSQIPLLTYCDEDADMYSDRHALIVPPSTGYGNRVYPAPFTDSSA 189 Query: 185 PVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQ-ERLHQTR-----NXXXXXXXXXXXX 346 P Q RSM P KDI YGYGSVAWK+RME WK++Q E+L + N Sbjct: 190 PPQARSMVPQKDIAEYGYGSVAWKDRMEVWKRRQGEKLQVIKHEGGNNGRGSNDDDELDD 249 Query: 347 XXLPLMDEARQPLSRKVPIPSSLINPYRMIIV 442 +P+MDE RQPLSRK+PI SS INPYRM+I+ Sbjct: 250 PDMPMMDEGRQPLSRKLPIRSSRINPYRMLIL 281
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 118 bits (295), Expect = 7e-27 Identities = 65/145 (44%), Positives = 80/145 (55%) Frame = +2 Query: 8 RGGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNLP 187 R + D P P +PLLT G+ +I + HAL+ S G R+H + D Sbjct: 128 RNSEFDLASAP--PGSQIPLLTYGEEDVEISSDSHALIVSPSPGHIHRVHQPHFPDP--A 183 Query: 188 VQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMD 367 PR M P KD+ YGYGSVAWK+RME WK+KQ +Q +P+MD Sbjct: 184 AHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKYQVVKHDGDSSLGDGDDADIPMMD 243 Query: 368 EARQPLSRKVPIPSSLINPYRMIIV 442 E RQPLSRKVPI SS INPYRM+IV Sbjct: 244 EGRQPLSRKVPIKSSKINPYRMLIV 268
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 115 bits (287), Expect = 6e-26 Identities = 67/152 (44%), Positives = 84/152 (55%), Gaps = 7/152 (4%) Frame = +2 Query: 5 GRGGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNL 184 GRG D P VPLLT D+ ++HAL+ G G R+H +P+ DS Sbjct: 134 GRGTDEVSHLYSASPGSEVPLLTYCDEDSDMYSDRHALIVPPSTGLGNRVHHVPFTDSFA 193 Query: 185 PVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQ-ERLHQTRNXXXXXXXXXXXXX---- 349 + R M P KD+ YGYGSVAWK+RME WK++Q E+L +N Sbjct: 194 SIHTRPMVPQKDLTVYGYGSVAWKDRMEVWKKQQIEKLQVVKNERVNDGDGDGFIVDELD 253 Query: 350 --XLPLMDEARQPLSRKVPIPSSLINPYRMII 439 LP+MDE RQPLSRK+PI SS INPYRM+I Sbjct: 254 DPGLPMMDEGRQPLSRKLPIRSSRINPYRMLI 285
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 88.2 bits (217), Expect = 8e-18 Identities = 54/138 (39%), Positives = 70/138 (50%), Gaps = 10/138 (7%) Frame = +2 Query: 59 VPLLTNGQMVDD---IPPEQHALVPSF-VGGGGKRIHPLPYADSNLPVQPRSMDPSKDIG 226 +PLLT+G V P Q S +G + PY D PV R +DPSKD+ Sbjct: 142 IPLLTHGHTVSGEIRTPDTQSVRTTSGPLGPSDRNAISSPYIDPRQPVPVRIVDPSKDLN 201 Query: 227 SYGYGSVAWKERMESWKQKQER--LHQT----RNXXXXXXXXXXXXXXLPLMDEARQPLS 388 SYG G+V WKER+E WK KQE+ L T L + D+ R P+S Sbjct: 202 SYGLGNVDWKERVEGWKLKQEKNMLQMTGKYHEGKGGEIEGTGSNGEELQMADDTRLPMS 261 Query: 389 RKVPIPSSLINPYRMIIV 442 R VPIPSS + PYR++I+ Sbjct: 262 RVVPIPSSRLTPYRVVII 279
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 74.3 bits (181), Expect = 1e-13 Identities = 49/110 (44%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Frame = +2 Query: 140 GGKRIHPLPYA-DSNLPVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQER-------- 292 GGKR LPY+ D N R +DP G G+VAWKER++ WK KQE+ Sbjct: 163 GGKR---LPYSSDVNQSPNRRIVDP------VGLGNVAWKERVDGWKMKQEKNTGPVSTQ 213 Query: 293 LHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPIPSSLINPYRMIIV 442 R L DEARQPLSRKV IPSS INPYRM+I+ Sbjct: 214 AASERGGVDIDASTDILADEALLNDEARQPLSRKVSIPSSRINPYRMVIM 263
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 69.3 bits (168), Expect = 4e-12 Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 8/136 (5%) Frame = +2 Query: 59 VPLLTNGQMVD-DIP-PEQHALVPSFVGGGGKRIHPLPYADSNLPVQPRSMDPSKDIGSY 232 V LLT+G V +IP P+++A + + I+ L LPV R +DPSKD+ SY Sbjct: 137 VSLLTHGHPVSGEIPTPDRNATLSPCIDPQLPGIYQLLL----LPV--RILDPSKDLNSY 190 Query: 233 GYGSVAWKERMESWKQKQER--LHQT----RNXXXXXXXXXXXXXXLPLMDEARQPLSRK 394 G +V WK+R++ WK KQ++ +H T L ++D+AR P+SR Sbjct: 191 GLVNVDWKKRIQGWKLKQDKNMIHMTGKYHEGKGGEFEGTGSNGDELQMVDDARLPMSRV 250 Query: 395 VPIPSSLINPYRMIIV 442 V PS+ + PYR++IV Sbjct: 251 VHFPSARMTPYRIVIV 266
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 62.0 bits (149), Expect = 6e-10 Identities = 44/112 (39%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Frame = +2 Query: 131 VGGG--------GKRIHPLPYADSNLPVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQ 286 VGGG KR+HP P S + GS G W+ERM+ WK + Sbjct: 160 VGGGYGNGEHGLHKRVHPYP---------------SSEAGSEG----GWRERMDDWKLQH 200 Query: 287 ERLHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPIPSSLINPYRMIIV 442 L + + L+DEARQPLSRKVPI SS INPYRM+IV Sbjct: 201 GNLGPEPDDDPE----------MGLIDEARQPLSRKVPIASSKINPYRMVIV 242
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/70 (42%), Positives = 37/70 (52%) Frame = +2 Query: 233 GYGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPIPSS 412 GY WKER++ WK +QE+ L EARQPL RKVPI SS Sbjct: 151 GYTDAEWKERVDKWKARQEKRGLVTKGEQTNEDKEDDEEEY-LDAEARQPLWRKVPISSS 209 Query: 413 LINPYRMIIV 442 I+PYR++IV Sbjct: 210 KISPYRIVIV 219
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 39.7 bits (91), Expect = 0.003 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Frame = +2 Query: 236 YGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMDE-----------ARQP 382 YG+ WK R+ESWK K+++ + + +P A Sbjct: 109 YGNPIWKNRVESWKDKKDKKSKKKKKDPKATKAEQHEAQIPTQQHMEDTPPNTESGATDV 168 Query: 383 LSRKVPIPSSLINPYRMIIV 442 LS +PIP + I YR++I+ Sbjct: 169 LSVVIPIPRTKITSYRIVII 188
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD| protein) Length = 3148 Score = 33.1 bits (74), Expect = 0.31 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Frame = +2 Query: 5 GRGGDLDGVHQPFQPNPNVPLLTNG---------QMVDDIPPEQHALVPSFVGGGGKRIH 157 GRGG P PN +L+ + V+D PE A VGG G H Sbjct: 453 GRGGGASASDTPESPNDEEDMLSRSSSCGANITPETVEDATPENPAQEGRPVGGSGAYDH 512 Query: 158 PLPYADSN 181 LP +DS+ Sbjct: 513 SLPPSDSS 520
>HLYB_PROVU (P11599) Alpha-hemolysin translocation ATP-binding protein hlyB| Length = 707 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/64 (28%), Positives = 35/64 (54%) Frame = -2 Query: 199 SWLHRKVGISIRERVDPLSPAADEGRNKGMLLRRDVIDHLAIGEEGDIGVWLEGLVHAVE 20 +WL R+VG+ +++ V LL R +ID++A+ D G+ +E ++HA + Sbjct: 539 NWLRRQVGVVLQDNV---------------LLNRSIIDNIAL---ADPGMPVEKVIHAAK 580 Query: 19 VSAA 8 ++ A Sbjct: 581 LAGA 584
>CRTC_ORYSA (Q9SLY8) Calreticulin precursor| Length = 424 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 191 AQEGWNQHKGAGGSSFPRRRRRKEQGHAAPAG 96 A+E W +HK A ++F ++KE+ AA AG Sbjct: 354 AEETWGKHKDAEKAAFDEAEKKKEEEEAAKAG 385
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 44 QPNPNVPLLTNGQMVDDIPPEQHALVP 124 QP P + L NGQ + +PP+ H L+P Sbjct: 58 QPPPTIRWLLNGQPLSMVPPDPHHLLP 84
>WRK55_ARATH (Q9SHB5) Probable WRKY transcription factor 55 (WRKY DNA-binding| protein 55) Length = 292 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -1 Query: 173 QHKGAGGSSFPRRRRRKEQG 114 + GA GSS PR+RRRK++G Sbjct: 134 ERSGASGSSTPRQRRRKDEG 153
>RTX1B_ACTPL (P26760) Toxin RTX-I translocation ATP-binding protein (RTX-I toxin| determinant B) (APX-IB) (HLY-IB) (Cytolysin IB) (CLY-IB) Length = 707 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = -2 Query: 199 SWLHRKVGISIRERVDPLSPAADEGRNKGMLLRRDVIDHLAIGEEGDIGVWLEGLVHAVE 20 +WL R+VG+ +++ V LL R + D++A+ D G+ +E +VHA + Sbjct: 539 NWLRRQVGVVLQDNV---------------LLNRSIRDNIAL---ADPGMPMEKIVHAAK 580 Query: 19 VSAA 8 ++ A Sbjct: 581 LAGA 584
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/76 (26%), Positives = 31/76 (40%) Frame = +2 Query: 80 QMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNLPVQPRSMDPSKDIGSYGYGSVAWKE 259 Q+ ++ P + L PS G + P+ A N+PV P S P WK Sbjct: 571 QLSENKPVKTEPLRPSVPQNGNVLVQPV--AAENIPVIPLSDSPPPS---------RWKP 619 Query: 260 RMESWKQKQERLHQTR 307 + WK ER+ + + Sbjct: 620 GQKPWKPSYERIQEMK 635
>NFAC3_MOUSE (P97305) Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3)| (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx) Length = 1075 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 28/98 (28%) Frame = +2 Query: 29 VHQPFQPNPNVPL----------LTNG-----------QMVDDIPPEQHALVPSFVGGGG 145 +HQPFQ P P+ + NG Q D + +Q A + S V G Sbjct: 786 MHQPFQVTPTSPIGSSYQSIQTSMYNGPTCLPVNPASSQEFDPVLFQQDAALSSLVNLGC 845 Query: 146 KRIHPLPYADSN-------LPVQPRSMDPSKDIGSYGY 238 + + P+P+ SN L P S+ + S GY Sbjct: 846 QPLSPIPFHSSNSDATGHLLAHSPHSVQTPPHLQSMGY 883
>NUCGL_HUMAN (Q9Y2C4) Endonuclease G-like 1 (EC 3.1.30.-) (Endo G-like)| Length = 368 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = +2 Query: 14 GDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLP 166 GD D H F+P+PN IPP A +VG G R H P Sbjct: 105 GDADRKHCKFKPDPN------------IPPTFSAFNEDYVGSGWSRGHMAP 143
>CRTC_MAIZE (Q9SP22) Calreticulin precursor| Length = 420 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -1 Query: 191 AQEGWNQHKGAGGSSFPRRRRRKEQGHAAPAG 96 A+E W +HK A ++F ++KE+ AA G Sbjct: 350 AEETWGKHKEAEKAAFDEAEKKKEEEDAAKGG 381
>BETA_BRUSU (Q8G1Z8) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 126 PSSAAGERGSTRSLMLIPTFLCNQDPWTHPR 218 PS GE+ S L P NQ+PW +PR Sbjct: 513 PSIMVGEKASDHILGRTPLARSNQEPWINPR 543
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 87 SMTSRRSSMPLFLPSSAAGERGSTRSLMLIPTFLCNQDPWTHPR 218 S+ R ++ L PS GE+ S L P NQ+PW +PR Sbjct: 501 SIFPRVTNGNLNAPSIMTGEKASDHILGRTPLAPSNQEPWINPR 544
>FLAV_MEGEL (P00321) Flavodoxin| Length = 137 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +2 Query: 224 GSYGYGSVAWKERMESWKQKQE 289 GSYG+GS W M++WKQ+ E Sbjct: 87 GSYGWGSGEW---MDAWKQRTE 105
>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)| Length = 1157 Score = 28.9 bits (63), Expect = 5.9 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = +2 Query: 11 GGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNLPV 190 GG L+ HQPF P P L + I +Q A +P G+ PL P Sbjct: 599 GGSLE--HQPFLPGPGPFLAELEKSTQTILGQQRASLPQ-AATFGELSGPLKPGSPYRPP 655 Query: 191 QPRSMDPS 214 PR+ DP+ Sbjct: 656 VPRAPDPA 663
>BETA_BRUME (Q8YFY2) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 126 PSSAAGERGSTRSLMLIPTFLCNQDPWTHPR 218 PS GE+ S L P NQ+PW +PR Sbjct: 513 PSIMVGEKASGHILGRTPLARSNQEPWINPR 543
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -1 Query: 182 GWNQHKGAGGSSFPRRRRRKEQGHAAPAGCHRP 84 G H+G GGS R + GH P G HRP Sbjct: 764 GHRSHEGPGGSMGSGHRSHEGPGHGGPHG-HRP 795
>BETA_AGRT5 (Q8UH55) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 549 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 126 PSSAAGERGSTRSLMLIPTFLCNQDPWTHPRILV 227 PS GE+ + L P NQ+PW +PR V Sbjct: 513 PSIMTGEKAADHILGKTPLPRSNQEPWVNPRAAV 546 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,199,691 Number of Sequences: 219361 Number of extensions: 1301122 Number of successful extensions: 4262 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4093 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4245 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)