ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [U... 129 3e-30
2CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [U... 123 2e-28
3CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [U... 118 7e-27
4CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic sub... 115 6e-26
5CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [U... 88 8e-18
6CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [U... 74 1e-13
7CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic sub... 69 4e-12
8CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [U... 62 6e-10
9CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [U... 54 2e-07
10CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [U... 40 0.003
11HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog... 33 0.31
12HLYB_PROVU (P11599) Alpha-hemolysin translocation ATP-binding pr... 32 0.91
13CRTC_ORYSA (Q9SLY8) Calreticulin precursor 32 0.91
14ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic round... 31 1.6
15WRK55_ARATH (Q9SHB5) Probable WRKY transcription factor 55 (WRKY... 30 2.0
16RTX1B_ACTPL (P26760) Toxin RTX-I translocation ATP-binding prote... 30 2.7
17NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer... 30 2.7
18NFAC3_MOUSE (P97305) Nuclear factor of activated T-cells, cytopl... 30 3.5
19NUCGL_HUMAN (Q9Y2C4) Endonuclease G-like 1 (EC 3.1.30.-) (Endo G... 30 3.5
20CRTC_MAIZE (Q9SP22) Calreticulin precursor 29 4.5
21BETA_BRUSU (Q8G1Z8) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH) 29 4.5
22BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH) 29 4.5
23FLAV_MEGEL (P00321) Flavodoxin 29 5.9
24K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment) 29 5.9
25BETA_BRUME (Q8YFY2) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH) 29 5.9
26PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regula... 28 7.7
27BETA_AGRT5 (Q8UH55) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH) 28 7.7

>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
           (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score =  129 bits (324), Expect = 3e-30
 Identities = 65/133 (48%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
 Frame = +2

Query: 47  PNPNVPLLTNGQMVDDIPPEQHAL-VPSFVGGGGKRIHPLPYADSNLPVQPRSMDPSKDI 223
           P   +PLLT G    +I  ++HAL VP  +GG G R+HP+  +D  +   PR M P KD+
Sbjct: 148 PGSQIPLLTYGDEDVEISSDRHALIVPPSLGGHGNRVHPVSLSDPTVAAHPRPMVPQKDL 207

Query: 224 GSYGYGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPI 403
             YGYGSVAWK+RME WK+KQ    Q                  P+MDE RQPLSRK+PI
Sbjct: 208 AVYGYGSVAWKDRMEEWKRKQNEKLQVVRHEGDPDFEDGDDADFPMMDEGRQPLSRKIPI 267

Query: 404 PSSLINPYRMIIV 442
            SS INPYRM+IV
Sbjct: 268 KSSKINPYRMLIV 280



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>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score =  123 bits (309), Expect = 2e-28
 Identities = 71/152 (46%), Positives = 90/152 (59%), Gaps = 6/152 (3%)
 Frame = +2

Query: 5   GRGGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNL 184
           GRGG LD       P   +PLLT      D+  ++HAL+     G G R++P P+ DS+ 
Sbjct: 135 GRGG-LDSA----PPGSQIPLLTYCDEDADMYSDRHALIVPPSTGYGNRVYPAPFTDSSA 189

Query: 185 PVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQ-ERLHQTR-----NXXXXXXXXXXXX 346
           P Q RSM P KDI  YGYGSVAWK+RME WK++Q E+L   +     N            
Sbjct: 190 PPQARSMVPQKDIAEYGYGSVAWKDRMEVWKRRQGEKLQVIKHEGGNNGRGSNDDDELDD 249

Query: 347 XXLPLMDEARQPLSRKVPIPSSLINPYRMIIV 442
             +P+MDE RQPLSRK+PI SS INPYRM+I+
Sbjct: 250 PDMPMMDEGRQPLSRKLPIRSSRINPYRMLIL 281



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>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-5)
          Length = 1069

 Score =  118 bits (295), Expect = 7e-27
 Identities = 65/145 (44%), Positives = 80/145 (55%)
 Frame = +2

Query: 8   RGGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNLP 187
           R  + D    P  P   +PLLT G+   +I  + HAL+ S   G   R+H   + D    
Sbjct: 128 RNSEFDLASAP--PGSQIPLLTYGEEDVEISSDSHALIVSPSPGHIHRVHQPHFPDP--A 183

Query: 188 VQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMD 367
             PR M P KD+  YGYGSVAWK+RME WK+KQ   +Q                 +P+MD
Sbjct: 184 AHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKYQVVKHDGDSSLGDGDDADIPMMD 243

Query: 368 EARQPLSRKVPIPSSLINPYRMIIV 442
           E RQPLSRKVPI SS INPYRM+IV
Sbjct: 244 EGRQPLSRKVPIKSSKINPYRMLIV 268



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>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score =  115 bits (287), Expect = 6e-26
 Identities = 67/152 (44%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
 Frame = +2

Query: 5   GRGGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNL 184
           GRG D         P   VPLLT      D+  ++HAL+     G G R+H +P+ DS  
Sbjct: 134 GRGTDEVSHLYSASPGSEVPLLTYCDEDSDMYSDRHALIVPPSTGLGNRVHHVPFTDSFA 193

Query: 185 PVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQ-ERLHQTRNXXXXXXXXXXXXX---- 349
            +  R M P KD+  YGYGSVAWK+RME WK++Q E+L   +N                 
Sbjct: 194 SIHTRPMVPQKDLTVYGYGSVAWKDRMEVWKKQQIEKLQVVKNERVNDGDGDGFIVDELD 253

Query: 350 --XLPLMDEARQPLSRKVPIPSSLINPYRMII 439
              LP+MDE RQPLSRK+PI SS INPYRM+I
Sbjct: 254 DPGLPMMDEGRQPLSRKLPIRSSRINPYRMLI 285



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>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
           (AtRSW1)
          Length = 1081

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 54/138 (39%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
 Frame = +2

Query: 59  VPLLTNGQMVDD---IPPEQHALVPSF-VGGGGKRIHPLPYADSNLPVQPRSMDPSKDIG 226
           +PLLT+G  V      P  Q     S  +G   +     PY D   PV  R +DPSKD+ 
Sbjct: 142 IPLLTHGHTVSGEIRTPDTQSVRTTSGPLGPSDRNAISSPYIDPRQPVPVRIVDPSKDLN 201

Query: 227 SYGYGSVAWKERMESWKQKQER--LHQT----RNXXXXXXXXXXXXXXLPLMDEARQPLS 388
           SYG G+V WKER+E WK KQE+  L  T                    L + D+ R P+S
Sbjct: 202 SYGLGNVDWKERVEGWKLKQEKNMLQMTGKYHEGKGGEIEGTGSNGEELQMADDTRLPMS 261

Query: 389 RKVPIPSSLINPYRMIIV 442
           R VPIPSS + PYR++I+
Sbjct: 262 RVVPIPSSRLTPYRVVII 279



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>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
           protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 49/110 (44%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
 Frame = +2

Query: 140 GGKRIHPLPYA-DSNLPVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQER-------- 292
           GGKR   LPY+ D N     R +DP       G G+VAWKER++ WK KQE+        
Sbjct: 163 GGKR---LPYSSDVNQSPNRRIVDP------VGLGNVAWKERVDGWKMKQEKNTGPVSTQ 213

Query: 293 LHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPIPSSLINPYRMIIV 442
               R                 L DEARQPLSRKV IPSS INPYRM+I+
Sbjct: 214 AASERGGVDIDASTDILADEALLNDEARQPLSRKVSIPSSRINPYRMVIM 263



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>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
 Frame = +2

Query: 59  VPLLTNGQMVD-DIP-PEQHALVPSFVGGGGKRIHPLPYADSNLPVQPRSMDPSKDIGSY 232
           V LLT+G  V  +IP P+++A +   +      I+ L      LPV  R +DPSKD+ SY
Sbjct: 137 VSLLTHGHPVSGEIPTPDRNATLSPCIDPQLPGIYQLLL----LPV--RILDPSKDLNSY 190

Query: 233 GYGSVAWKERMESWKQKQER--LHQT----RNXXXXXXXXXXXXXXLPLMDEARQPLSRK 394
           G  +V WK+R++ WK KQ++  +H T                    L ++D+AR P+SR 
Sbjct: 191 GLVNVDWKKRIQGWKLKQDKNMIHMTGKYHEGKGGEFEGTGSNGDELQMVDDARLPMSRV 250

Query: 395 VPIPSSLINPYRMIIV 442
           V  PS+ + PYR++IV
Sbjct: 251 VHFPSARMTPYRIVIV 266



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>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-7) (Irregular xylem protein 3)
           (AtIRX3)
          Length = 1026

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 44/112 (39%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
 Frame = +2

Query: 131 VGGG--------GKRIHPLPYADSNLPVQPRSMDPSKDIGSYGYGSVAWKERMESWKQKQ 286
           VGGG         KR+HP P               S + GS G     W+ERM+ WK + 
Sbjct: 160 VGGGYGNGEHGLHKRVHPYP---------------SSEAGSEG----GWRERMDDWKLQH 200

Query: 287 ERLHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPIPSSLINPYRMIIV 442
             L    +              + L+DEARQPLSRKVPI SS INPYRM+IV
Sbjct: 201 GNLGPEPDDDPE----------MGLIDEARQPLSRKVPIASSKINPYRMVIV 242



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>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 30/70 (42%), Positives = 37/70 (52%)
 Frame = +2

Query: 233 GYGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMDEARQPLSRKVPIPSS 412
           GY    WKER++ WK +QE+                      L  EARQPL RKVPI SS
Sbjct: 151 GYTDAEWKERVDKWKARQEKRGLVTKGEQTNEDKEDDEEEY-LDAEARQPLWRKVPISSS 209

Query: 413 LINPYRMIIV 442
            I+PYR++IV
Sbjct: 210 KISPYRIVIV 219



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>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-8) (Irregular xylem protein 1)
           (AtIRX1)
          Length = 985

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
 Frame = +2

Query: 236 YGSVAWKERMESWKQKQERLHQTRNXXXXXXXXXXXXXXLPLMDE-----------ARQP 382
           YG+  WK R+ESWK K+++  + +               +P               A   
Sbjct: 109 YGNPIWKNRVESWKDKKDKKSKKKKKDPKATKAEQHEAQIPTQQHMEDTPPNTESGATDV 168

Query: 383 LSRKVPIPSSLINPYRMIIV 442
           LS  +PIP + I  YR++I+
Sbjct: 169 LSVVIPIPRTKITSYRIVII 188



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>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD|
           protein)
          Length = 3148

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
 Frame = +2

Query: 5   GRGGDLDGVHQPFQPNPNVPLLTNG---------QMVDDIPPEQHALVPSFVGGGGKRIH 157
           GRGG       P  PN    +L+           + V+D  PE  A     VGG G   H
Sbjct: 453 GRGGGASASDTPESPNDEEDMLSRSSSCGANITPETVEDATPENPAQEGRPVGGSGAYDH 512

Query: 158 PLPYADSN 181
            LP +DS+
Sbjct: 513 SLPPSDSS 520



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>HLYB_PROVU (P11599) Alpha-hemolysin translocation ATP-binding protein hlyB|
          Length = 707

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = -2

Query: 199 SWLHRKVGISIRERVDPLSPAADEGRNKGMLLRRDVIDHLAIGEEGDIGVWLEGLVHAVE 20
           +WL R+VG+ +++ V               LL R +ID++A+    D G+ +E ++HA +
Sbjct: 539 NWLRRQVGVVLQDNV---------------LLNRSIIDNIAL---ADPGMPVEKVIHAAK 580

Query: 19  VSAA 8
           ++ A
Sbjct: 581 LAGA 584



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>CRTC_ORYSA (Q9SLY8) Calreticulin precursor|
          Length = 424

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 191 AQEGWNQHKGAGGSSFPRRRRRKEQGHAAPAG 96
           A+E W +HK A  ++F    ++KE+  AA AG
Sbjct: 354 AEETWGKHKDAEKAAFDEAEKKKEEEEAAKAG 385



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>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)|
          Length = 1007

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 44  QPNPNVPLLTNGQMVDDIPPEQHALVP 124
           QP P +  L NGQ +  +PP+ H L+P
Sbjct: 58  QPPPTIRWLLNGQPLSMVPPDPHHLLP 84



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>WRK55_ARATH (Q9SHB5) Probable WRKY transcription factor 55 (WRKY DNA-binding|
           protein 55)
          Length = 292

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 173 QHKGAGGSSFPRRRRRKEQG 114
           +  GA GSS PR+RRRK++G
Sbjct: 134 ERSGASGSSTPRQRRRKDEG 153



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>RTX1B_ACTPL (P26760) Toxin RTX-I translocation ATP-binding protein (RTX-I toxin|
           determinant B) (APX-IB) (HLY-IB) (Cytolysin IB) (CLY-IB)
          Length = 707

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -2

Query: 199 SWLHRKVGISIRERVDPLSPAADEGRNKGMLLRRDVIDHLAIGEEGDIGVWLEGLVHAVE 20
           +WL R+VG+ +++ V               LL R + D++A+    D G+ +E +VHA +
Sbjct: 539 NWLRRQVGVVLQDNV---------------LLNRSIRDNIAL---ADPGMPMEKIVHAAK 580

Query: 19  VSAA 8
           ++ A
Sbjct: 581 LAGA 584



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>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +2

Query: 80  QMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNLPVQPRSMDPSKDIGSYGYGSVAWKE 259
           Q+ ++ P +   L PS    G   + P+  A  N+PV P S  P             WK 
Sbjct: 571 QLSENKPVKTEPLRPSVPQNGNVLVQPV--AAENIPVIPLSDSPPPS---------RWKP 619

Query: 260 RMESWKQKQERLHQTR 307
             + WK   ER+ + +
Sbjct: 620 GQKPWKPSYERIQEMK 635



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>NFAC3_MOUSE (P97305) Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3)|
            (NFATc3) (T cell transcription factor NFAT4) (NF-AT4)
            (NFATx)
          Length = 1075

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 28/98 (28%)
 Frame = +2

Query: 29   VHQPFQPNPNVPL----------LTNG-----------QMVDDIPPEQHALVPSFVGGGG 145
            +HQPFQ  P  P+          + NG           Q  D +  +Q A + S V  G 
Sbjct: 786  MHQPFQVTPTSPIGSSYQSIQTSMYNGPTCLPVNPASSQEFDPVLFQQDAALSSLVNLGC 845

Query: 146  KRIHPLPYADSN-------LPVQPRSMDPSKDIGSYGY 238
            + + P+P+  SN       L   P S+     + S GY
Sbjct: 846  QPLSPIPFHSSNSDATGHLLAHSPHSVQTPPHLQSMGY 883



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>NUCGL_HUMAN (Q9Y2C4) Endonuclease G-like 1 (EC 3.1.30.-) (Endo G-like)|
          Length = 368

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 14  GDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLP 166
           GD D  H  F+P+PN            IPP   A    +VG G  R H  P
Sbjct: 105 GDADRKHCKFKPDPN------------IPPTFSAFNEDYVGSGWSRGHMAP 143



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>CRTC_MAIZE (Q9SP22) Calreticulin precursor|
          Length = 420

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 191 AQEGWNQHKGAGGSSFPRRRRRKEQGHAAPAG 96
           A+E W +HK A  ++F    ++KE+  AA  G
Sbjct: 350 AEETWGKHKEAEKAAFDEAEKKKEEEDAAKGG 381



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>BETA_BRUSU (Q8G1Z8) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 549

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 126 PSSAAGERGSTRSLMLIPTFLCNQDPWTHPR 218
           PS   GE+ S   L   P    NQ+PW +PR
Sbjct: 513 PSIMVGEKASDHILGRTPLARSNQEPWINPR 543



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>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 550

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 87  SMTSRRSSMPLFLPSSAAGERGSTRSLMLIPTFLCNQDPWTHPR 218
           S+  R ++  L  PS   GE+ S   L   P    NQ+PW +PR
Sbjct: 501 SIFPRVTNGNLNAPSIMTGEKASDHILGRTPLAPSNQEPWINPR 544



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>FLAV_MEGEL (P00321) Flavodoxin|
          Length = 137

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 224 GSYGYGSVAWKERMESWKQKQE 289
           GSYG+GS  W   M++WKQ+ E
Sbjct: 87  GSYGWGSGEW---MDAWKQRTE 105



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>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +2

Query: 11  GGDLDGVHQPFQPNPNVPLLTNGQMVDDIPPEQHALVPSFVGGGGKRIHPLPYADSNLPV 190
           GG L+  HQPF P P   L    +    I  +Q A +P      G+   PL       P 
Sbjct: 599 GGSLE--HQPFLPGPGPFLAELEKSTQTILGQQRASLPQ-AATFGELSGPLKPGSPYRPP 655

Query: 191 QPRSMDPS 214
            PR+ DP+
Sbjct: 656 VPRAPDPA 663



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>BETA_BRUME (Q8YFY2) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 549

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 126 PSSAAGERGSTRSLMLIPTFLCNQDPWTHPR 218
           PS   GE+ S   L   P    NQ+PW +PR
Sbjct: 513 PSIMVGEKASGHILGRTPLARSNQEPWINPR 543



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>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (PNUTS
           protein) (MHC class I region proline-rich protein CAT53)
          Length = 872

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 182 GWNQHKGAGGSSFPRRRRRKEQGHAAPAGCHRP 84
           G   H+G GGS     R  +  GH  P G HRP
Sbjct: 764 GHRSHEGPGGSMGSGHRSHEGPGHGGPHG-HRP 795



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>BETA_AGRT5 (Q8UH55) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 549

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 126 PSSAAGERGSTRSLMLIPTFLCNQDPWTHPRILV 227
           PS   GE+ +   L   P    NQ+PW +PR  V
Sbjct: 513 PSIMTGEKAADHILGKTPLPRSNQEPWVNPRAAV 546


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,199,691
Number of Sequences: 219361
Number of extensions: 1301122
Number of successful extensions: 4262
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4245
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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