ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14b04 |
|---|---|
| Clone Library Name | barley_pub |
>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 935 Score = 36.2 bits (82), Expect = 0.043 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = +2 Query: 230 MASRFWGQGXXXXXXXXX-XXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTE 406 M SRF+ QG + SD+E + G K++YL D D D Sbjct: 1 MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNG----KSKYLAGGNADDSDDDDG 56 Query: 407 SHRVIRSLKGQAHDEMKATAD 469 RV++S K + DEM +T D Sbjct: 57 QKRVVKSAKDKRFDEMASTVD 77
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = +2 Query: 302 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGQAHDEMKATA 466 GS+SE E + D NRYL ++D DD+D + RV++ K + +EM T Sbjct: 10 GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTD--TKRVVKPAKDKRFEEMTYTV 67 Query: 467 D 469 D Sbjct: 68 D 68
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -2 Query: 455 SSHHALVPSTSESRGGSQYQSHHCLVYICSDNGSWTHRVPHHQLLISRYHSLVL-----T 291 SS H L+ S S Q H + + S +V HHQLL+ + + + Sbjct: 283 SSIHQLIAPASYS----PIQPHSLIKHQQIPLHSPPPKVSHHQLLLQQQQQQIQPITLQS 338 Query: 290 RSRPHPPQSHCLPVPKN 240 S+ PP HC+P+P + Sbjct: 339 PSQDPPPSQHCIPLPNH 355
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -2 Query: 392 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 246 HH ++ + S S +H +P ++H ++ +P PPQ +PVP Sbjct: 47 HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89
>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)| (x.MCM7) Length = 720 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +2 Query: 134 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 244 N+ S + +P +GR + KTVE N+Q AA+ SRF Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +2 Query: 305 SDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGQAHDEM 454 S SE S AG G GS + + + D D+ D R + L+G D + Sbjct: 694 SSSESSAAGLGALSGSPSHRTSAWLDDGDELDFSPPRCLEGLRGLDFDPL 743
>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 430 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +3 Query: 195 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 329 +QLK +K++ L+ GD +ET+T++ M+T+ +N +I K+ Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 329 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 228 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 329 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 228 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 329 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 228 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/69 (24%), Positives = 23/69 (33%) Frame = +2 Query: 248 GQGXXXXXXXXXXXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRS 427 G S SE S G G GS + + + D DD D R + Sbjct: 697 GSCESLSSSSSSSSSSSSSSSSESSAGGLGPLSGSPSHRTSAWLDDGDDLDFSPPRCLEG 756 Query: 428 LKGQAHDEM 454 L+G D + Sbjct: 757 LRGLDFDPL 765
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%) Frame = -2 Query: 338 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 243 PH L +S+ HSL++TR PH P S +CLP+P+ Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274
>GNRP_MOUSE (P27671) Guanine nucleotide-releasing protein (GNRP) (Ras-specific| nucleotide exchange factor CDC25) (CDC25Mm) Length = 1262 Score = 29.3 bits (64), Expect = 5.3 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 13/56 (23%) Frame = +2 Query: 341 RDGSKNRYLN-------KYTQDSDDSDTESHRVIRSLKGQAHD------EMKATAD 469 R + NR LN K+TQD D DT +RVI L+ HD E KA A+ Sbjct: 936 RRAATNRVLNVLRHWVTKHTQDFDTDDTLKYRVICFLEEVMHDPDLLTQERKAAAN 991
>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)| Length = 3462 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -2 Query: 437 VPSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 330 +PS+S S G S +Q H +Y ++ SW T ++P H Sbjct: 3162 LPSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3200
>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of| polyhomeotic 3) (Early development regulatory protein 3) Length = 983 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = -2 Query: 455 SSHHALVPSTSESRGGSQYQSHHCLVYICSDNGSWTHRVPHHQLLISRYHS----LVLTR 288 SS H L+ S S Q H + + S +V HHQL++ + + L Sbjct: 286 SSIHQLIAPASYS----PIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQN 341 Query: 287 SRPHPPQS-HCLPVPKNETP 231 S PP S HC+P+ + P Sbjct: 342 STQDPPPSQHCIPLQNHGLP 361
>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)| Length = 3461 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -2 Query: 437 VPSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 330 +PS+S S G S +Q H +Y ++ SW T ++P H Sbjct: 3161 LPSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3199
>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21| Length = 778 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +2 Query: 302 GSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSD-TESHRVIRSLKGQAHDEMKATAD 469 GSDS+ +E+G GG+DG + L+++ S S T HR S + + ++ A+ Sbjct: 411 GSDSQDTESGGGGKDGGPS--LSRFGAWSKISTLTSKHRTEPSSRNEPNEGSSPVAE 465
>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)| Length = 203 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = -2 Query: 392 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVPKNET 234 HH ++ + S TH + H +H V+ +P PQ +PVP ++ Sbjct: 77 HHQIIPVVSQQHPLTHTLQSH------HHIPVVPAQQPRVPQQAMMPVPGQQS 123
>CT012_HUMAN (Q9NVP4) Protein C20orf12| Length = 579 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 329 GDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGQAHDEMK 457 GDGG GS++ +++ Y+Q + D+ E + I++ K + E K Sbjct: 385 GDGGLCGSRSSWVSDYSQSTSDT-IEKIKRIKNFKTKTFQEKK 426
>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3| glycoprotein) Length = 428 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -1 Query: 246 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 136 ++ D M AAAC+LP F+ S +SG G+ A +G+ Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344
>GAT15_ARATH (Q9ZPX0) Putative GATA transcription factor 15| Length = 207 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Frame = -2 Query: 452 SHHALVPSTSESRGGSQYQSHHCLVYICSDNGSWTH----RVPH 333 S A VP + GG Y SHH Y S + SW H RVP+ Sbjct: 141 SSAAEVPVENSYNGGGNYYSHHHHHY-ASSSPSWAHQNTQRVPY 183
>POLG_HCVJK (Q68801) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3018 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +2 Query: 305 SDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGQAHD 448 S ++S +G G + GS D DDSD ESH + L+G+ D Sbjct: 2362 SAEDESTSGVGTQSGSLT---GPVQLDDDDSDNESHSSMPPLEGEPGD 2406
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%) Frame = -2 Query: 452 SHHALVPSTSESRGGSQYQSHH--------CLVYICSDNGSWTHRVPHHQLLISRYHSLV 297 SH +PST+ +R Q HH + +G W R L + + SL Sbjct: 8 SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQR-QFPVLTTTVFFSLF 66 Query: 296 LT--RSRPHPPQSHCLPVPKNE 237 L+ P PPQ H P P + Sbjct: 67 LSFPPHPPRPPQDHHRPTPARD 88
>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)| Length = 3460 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -2 Query: 437 VPSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 330 +PS+S S G S +Q H +Y ++ SW T ++P H Sbjct: 3160 LPSSSNSIGCSPFQFHEATIYNSVNSSSWKRITIQLPDH 3198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,077,253 Number of Sequences: 219361 Number of extensions: 1029333 Number of successful extensions: 4671 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4637 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
