>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
 Frame = +2

Query: 116  PHYQAATLIAS---------PSYPDAITWSSDNLVAVASGHIVTILNPAALDG-PRGLVV 265
            P+Y   TL  S         PS P  I   S+     ASGH   I  P+AL G   G  V
Sbjct: 2805 PYYTDTTLAVSTFAKLSSQTPSSPLTIYSGSE-----ASGH-TEIPQPSALPGIDVGSSV 2858

Query: 266  LRPRDPFPIGVVNREDLFEPS-------LVPTSLARDTE 361
            + P+D F    VN E  F+PS         P SL+ DT+
Sbjct: 2859 MSPQDSFKEIHVNIEATFKPSSEEYLHITEPPSLSPDTK 2897

>PDE4A_DROME (Q9W4T4) cAMP-specific 3',5'-cyclic phosphodiesterase, isoform I|
           (EC 3.1.4.17) (Learning/memory process protein) (Protein
           dunce)
          Length = 1209

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = -1

Query: 399 KSCWDHETDRAHGSVSRAKDVGTKLGSKRSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRI 220
           KSCW        GS   +    T +GS  +  L +    G    +T +    S AA  R+
Sbjct: 412 KSCWSRIVLAPIGSAGGSSSATTVIGSNSNETLASSSTTGGTATTTQNSSSVSVAAHHRL 471

Query: 219 VTMWPEATAT 190
            +    A AT
Sbjct: 472 TSSSASALAT 481

>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)|
          Length = 1235

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 202 GNGHQVVA*PSDGVWIGRGGNEGGGL-VMRSHGQRNLRASNPKARR 68
           G G  V   PSDG+  GRGG  GG    M   G R L AS  +  R
Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599

>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)|
           (NAD(P)H-utilizing glutamate dehydrogenase)
          Length = 444

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -1

Query: 315 RSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRIV 217
           ++SL T PMG G  G S  SPRG S+A   R V
Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143

>Y150_MYCPN (P75036) Very hypothetical mgpC-like protein MPN150 (E07_orf224)|
          Length = 224

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 107 AMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGP-RGLVVL 268
           A A  Y   T   + +Y  A+TWS+   +  A G+   + N A L+GP  GL  L
Sbjct: 88  AGAVGYDMTTDTNASTYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTL 142

>SYQ_DROME (Q9Y105) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 778

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 261 LCFALGILFPLEWSTGKISLN 323
           LC ALGI  P++W  G++++N
Sbjct: 473 LCNALGIYCPVQWEYGRLNMN 493

>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP|
           deaminase)
          Length = 193

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 312 SSLLTTPMGKGSLGRSTTSPRGPSSAAGF 226
           SS   TP G GSLG      RGP+ + G+
Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183

>PTPRD_MOUSE (Q64487) Receptor-type tyrosine-protein phosphatase delta precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase delta)
           (R-PTP-delta)
          Length = 1894

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 328 TWFKEIFPVDHSNGKRIPRAKHNESARPVECRRVQDRD 215
           TWFK+  PVD SN     +   +ES   ++  + ++ D
Sbjct: 165 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 202

>PDE4C_DROME (Q9W4S9) cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G|
           (EC 3.1.4.17) (Learning/memory process protein) (Protein
           dunce)
          Length = 983

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 390 WDHETDRAHGSVSRAKDVGTKLGSKRSSLLTTPMGKGSLGRSTTSPRGPSSAAG 229
           +D ET+  + ++  A   G+   SKRSSL +    +     +TTS  G  +  G
Sbjct: 193 YDRETEEFYSNIQDAAGTGSSSRSKRSSLFS----RSDSSATTTSSSGGGTFTG 242

>GLYA_EHRRW (Q5HAJ7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 421

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 104 LAMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDP 283
           LA   HY  A L+A+  +P  I ++          H++T      L GPRG V++     
Sbjct: 201 LADIAHY--AGLVAAGEFPSPIEYA----------HVITSTTHKTLRGPRGAVIM----- 243

Query: 284 FPIGVVNREDLFE 322
                 N ED+++
Sbjct: 244 -----TNHEDIYK 251

>GLYA_EHRRG (Q5FG30) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 421

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 104 LAMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDP 283
           LA   HY  A L+A+  +P  I ++          H++T      L GPRG V++     
Sbjct: 201 LADIAHY--AGLVAAGEFPSPIEYA----------HVITSTTHKTLRGPRGAVIM----- 243

Query: 284 FPIGVVNREDLFE 322
                 N ED+++
Sbjct: 244 -----TNHEDIYK 251

>RTBDN_CANFA (Q4TUC0) Retbindin precursor|
          Length = 223

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 145 LPVLSRRHHLVKRQLG-GRCLWPHRHDPEPGGTRRASRTRCASP*GSFSHWSGQQGRSL* 321
           LP LSRRHH +   LG G+        PE  G    S   C  P      + G    +L 
Sbjct: 34  LPALSRRHHRLAADLGTGQLHLAEMDTPEASGPGMVSE-HCGKPSPGCESFLGHLQVALH 92

Query: 322 TKFSAYIL 345
            +F   +L
Sbjct: 93  NRFRLLLL 100

>BCHL_RHOGE (Q9JPA5) Light-independent protochlorophyllide reductase|
           iron-sulfur ATP-binding protein (EC 1.18.-.-) (LI-POR
           subunit L) (DPOR subunit L)
          Length = 302

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 363 GSVSRAKDVGTKLGSKRSSLLTTPMGKGSLGRSTTS 256
           GSV    + G K+G+ +   +    GKG +G+STTS
Sbjct: 21  GSVQVQMETGAKIGNAKVFAI---YGKGGIGKSTTS 53

>NIFH_TRITH (P26254) Nitrogenase iron protein (EC 1.18.6.1) (Nitrogenase|
           component II) (Nitrogenase Fe protein) (Nitrogenase
           reductase)
          Length = 294

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 288 GKGSLGRSTTSPRGPSSAAG-----FRIVTMWPEATATKLSLD 175
           GKG +G+STTS    ++ A        IV   P+A +T+L LD
Sbjct: 8   GKGGIGKSTTSQNTLAAMANRHGQRIMIVGCDPKADSTRLILD 50

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
 Frame = +1

Query: 121 LPGRHPHCLPV-------LSRRHHLVKRQLGGRCLWPHRHDPEPGGTRRA 249
           L GRHP    V         RR HL++R++GG     HR      G RRA
Sbjct: 81  LRGRHPRVRRVPQRDQDGAPRRRHLLRRRVGG-----HRGRNRHAGDRRA 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,467,355
Number of Sequences: 219361
Number of extensions: 1191367
Number of successful extensions: 3593
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3590
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)