>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)|
          Length = 1267

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
 Frame = +3

Query: 111 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 287
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 288 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGKIV 443
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK++
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVL 136

>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)|
          Length = 1222

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
 Frame = +3

Query: 111 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 287
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 288 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGKIV 443
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK++
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVL 136

>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)|
          Length = 1222

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
 Frame = +3

Query: 111 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 287
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 288 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGKIV 443
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK++
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVL 136

>MURG_STAAW (Q8NWR4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + + A I ++  NGNA   +Q TGF  + K++  +GG   SK
Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSK 200

>MURG_STAAS (Q6G9E3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + + A I ++  NGNA   +Q TGF  + K++  +GG   SK
Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSK 200

>MURG_STAAR (Q6GGZ0) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + + A I ++  NGNA   +Q TGF  + K++  +GG   SK
Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSK 200

>MURG_STAAN (P65482) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + + A I ++  NGNA   +Q TGF  + K++  +GG   SK
Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSK 200

>MURG_STAAM (P65481) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + + A I ++  NGNA   +Q TGF  + K++  +GG   SK
Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSK 200

>MURG_STAAC (Q5HG02) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + + A I ++  NGNA   +Q TGF  + K++  +GG   SK
Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSK 200

>ITIH3_MESAU (P97280) Inter-alpha-trypsin inhibitor heavy chain H3 precursor|
           (ITI heavy chain H3) (Inter-alpha-inhibitor heavy chain
           3) (HC3)
          Length = 886

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +3

Query: 246 STQCAPNGYYFIPVYDKGSFVVRVKGPKGWSWKPETVPAVIDQNGCNGNADINFQFTGFT 425
           S Q  P  YY++       F+++V G      K +T+   ID+        I    TG T
Sbjct: 632 SHQSPPTPYYYVD--GDPHFIIQVPG------KNDTICFNIDEKPGTVLRLIQDPVTGIT 683

Query: 426 VSGKIVGAVGGKSCSKDG 479
           V+G+I+G  G    S+ G
Sbjct: 684 VTGQIIGDKGSSPYSRTG 701

>MURG_STAHJ (Q4L6C8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 355

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 342 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGGKSCSK 473
           K + V A I Q+   GN    +Q TGF  S K++  +GG   SK
Sbjct: 157 KADFVGATIRQDLKEGNQSRGYQLTGFDASKKVLLVMGGSLGSK 200

>TNR17_MOUSE (O88472) Tumor necrosis factor receptor superfamily member 17|
           (B-cell maturation protein)
          Length = 185

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +3

Query: 114 EIDGCGGFVEASSGLAKSRRASESKFDYS-DITVELCTVDGLVKESTQCAPNGYYFIPVY 290
           ++DG     +A + L + R   +  F  S + TVE CT +  VK   +   + ++ +P  
Sbjct: 89  QLDGSAQLDKADTELTRIRAGDDRIFPRSLEYTVEECTCEDCVKSKPKGDSDHFFPLPAM 148

Query: 291 DKGS--FVVRVKGPKGWSWKPETVPAVI 368
           ++G+   V    G  G S  P  + +V+
Sbjct: 149 EEGATILVTTKTGDYGKSSVPTALQSVM 176

>RL7_DICDI (P11874) 60S ribosomal protein L7|
          Length = 245

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 168 RRASESKFDYSDITVELCTVDGLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKGWSWKP 347
           +RA +   +Y     E   ++ + K S      G +++P   K +FV+R++G  G S KP
Sbjct: 49  KRAEKYVSEYHKTEREAIRLNRIAKNS------GTFYVPPAAKVAFVIRIRGINGVSPKP 102

Query: 348 ETV 356
             V
Sbjct: 103 RKV 105

>ITIH3_RAT (Q63416) Inter-alpha-trypsin inhibitor heavy chain H3 precursor|
           (ITI heavy chain H3) (Inter-alpha-inhibitor heavy chain
           3)
          Length = 887

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +3

Query: 246 STQCAPNGYYFIPVYDKGSFVVRVKGPKGWSWKPETVPAVIDQNGCNGNADINFQFTGFT 425
           S Q + + YY++       F+++V G      K +T+   ID+      + I    TG  
Sbjct: 633 SQQSSHSPYYYVD--GDPHFIIQVPG------KNDTICFNIDEKPGTVLSLIQDPVTGIA 684

Query: 426 VSGKIVGAVGGKSCSKDG 479
           V+G+I+G  G  + S+ G
Sbjct: 685 VTGQIIGEKGNNASSRTG 702

>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1406

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 159  AKSRRASESKFDYSDITVELCTVD--GLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKG 332
            AKS   S  K   +    ELC +D  G  KES +  P G     V  KG       G   
Sbjct: 963  AKSVTNSAGKLVITSRNTELCLIDEFGRTKESYK-VPYG----AVLGKGDGETVNGGETV 1017

Query: 333  WSWKPETVPAVIDQNGCNGNADI 401
             +W P T+P V + +G    AD+
Sbjct: 1018 ANWDPHTMPVVSEVSGIIRFADM 1040

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = -1

Query: 481 PPSFEQLLPPTAPTILPDTVNPVN*KFISAFPLHPF*SMTAGTVSGFHDHPLGPLTLTTN 302
           P  F      T    L D+ NPV      +   HPF +    + +GF   P G LTL   
Sbjct: 10  PTIFMSFFQMTKRVRLSDSFNPVYPYEDESTSQHPFINPGFISPNGFTQSPDGVLTLKCL 69

Query: 301 EPLS*TG 281
            PL+ TG
Sbjct: 70  TPLTTTG 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,040,576
Number of Sequences: 219361
Number of extensions: 1082470
Number of successful extensions: 2751
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2740
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)