>LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 885

 Score =  171 bits (432), Expect = 1e-42
 Identities = 88/118 (74%), Positives = 94/118 (79%)
 Frame = +2

Query: 101 PVELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEA 280
           PVELP RLA+LPFRNKVLLPGAIVRIRCT PSSVKLVEQELWQ+E+KGLIGVLPVRDSEA
Sbjct: 5   PVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64

Query: 281 AAVGSILXXXXXXXXXXXXXXXXXASGRESSKQDAKSGKEPIHWHSRGVAARALHLSR 454
            AVGS+L                  S  ESSKQD K+GKEPIHWHS+GVAARALHLSR
Sbjct: 65  TAVGSLL-SPGVGSDSGEGGSKVGGSAVESSKQDTKNGKEPIHWHSKGVAARALHLSR 121

>LONH1_SPIOL (O04979) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 875

 Score =  139 bits (351), Expect = 3e-33
 Identities = 74/118 (62%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
 Frame = +2

Query: 104 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRD-SEA 280
           VELP RL IL FRNKVLLPGAI+RIRCT+PSSVKLVEQELWQRE+KGLIG++PVRD SE+
Sbjct: 5   VELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASES 64

Query: 281 AAVGSILXXXXXXXXXXXXXXXXXASGRESSKQDAKSGKEPIHWHSRGVAARALHLSR 454
           A+V  +L                     +S K D KS +E +HWH+RGVAARALHLSR
Sbjct: 65  ASVAPVLYPGGGTDSGERNVKSQPGLS-DSRKADGKSQQEAVHWHTRGVAARALHLSR 121

>LONH1_ARATH (O64948) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 888

 Score =  129 bits (325), Expect = 3e-30
 Identities = 68/118 (57%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
 Frame = +2

Query: 104 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVR-DSEA 280
           VELP RLAILPFRNKVLLPGAI+RIRCT+ SSV LVEQELWQ+E+KGLIG+LPVR D+E 
Sbjct: 5   VELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEG 64

Query: 281 AAVGSILXXXXXXXXXXXXXXXXXASGRESSKQDAKSGKEPIHWHSRGVAARALHLSR 454
           +++G+++                  +  ++ K DAK  ++ + WH+RGVAARALHLSR
Sbjct: 65  SSIGTMINPGAGSDSGERSLKFLVGT-TDAQKSDAKD-QQDLQWHTRGVAARALHLSR 120

>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)|
          Length = 826

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 107 ELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEAAA 286
           ++P  L ILP RN V  PG ++ +      ++ L++  +    D  +IGV+  R +E   
Sbjct: 27  DIPQVLPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAV---RDDQVIGVVTQRRAEEED 83

Query: 287 VGS 295
            G+
Sbjct: 84  PGA 86

>SNX15_HUMAN (Q9NRS6) Sorting nexin-15|
          Length = 342

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -2

Query: 395 SRSLH----PVCSTPSQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREA 255
           SR LH    P+  TP         LLP   R L+       P P SPA+EA
Sbjct: 135 SRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSSPAQEA 185

>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 6/27 (22%)
 Frame = -2

Query: 425 LPGCASEWAPS------RSLHPVCSTP 363
           LP C S+WAP+       S HP+C++P
Sbjct: 658 LPPCCSQWAPATTSLIFSSQHPLCASP 684

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 329 PLNHRPLQATGSNQQPQPQSPAREAPQ 249
           P   +P Q T +  QPQP +PA+  PQ
Sbjct: 432 PAKPQPQQPTPAKPQPQPPTPAKPQPQ 458

>CLCN1_HUMAN (P35523) Chloride channel protein, skeletal muscle (Chloride|
           channel protein 1) (ClC-1)
          Length = 988

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 410 SEWAPSRSLHPVCSTPSQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAP 252
           SE  PS +LHP  + P    +  G L           G  QQP+   PA + P
Sbjct: 723 SELPPSLALHPSTTAPLSPEEPNGPL----------PGHKQQPEAPEPAGQRP 765

>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 314 PLQATGSNQQPQPQSPAREAPQ 249
           P    GSNQQP+ Q+P ++ PQ
Sbjct: 124 PYNQGGSNQQPRQQAPRQQRPQ 145

>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
           domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 141 RNGSMASRPGSSTGASAMAADALLWCVRRTAGGTGIRVEE 22
           RN         +TG++    + L WC  +TAG  G+ V +
Sbjct: 493 RNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVHVSD 532

>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3|
           (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
           (eIF4GII)
          Length = 1585

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 395 SRSLHPVCSTPSQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQ 249
           S S+ P   TP+  +QA   ++ +NH P+        P PQ P    PQ
Sbjct: 28  SPSIRPGAQTPTAVYQANQHIMMVNHLPM------PYPVPQGPQYCIPQ 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,482,871
Number of Sequences: 219361
Number of extensions: 1095544
Number of successful extensions: 3748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3732
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)