ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, co... 38 1.8
2gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, comp... 38 1.8
3gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete... 38 1.8
4gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 1... 38 1.8
5gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, comple... 38 1.8
6gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, com... 38 1.8
7gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chrom... 36 7.1
8gb|AC101652.8| Mus musculus chromosome 1, clone RP23-58D20, comp... 36 7.1
9gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence 36 7.1
10emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chr... 36 7.1
11emb|BX957248.11| Zebrafish DNA sequence from clone DKEY-195J22 i... 36 7.1
12gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 36 7.1
13gb|AF369029.2| White spot syndrome virus, complete genome 36 7.1
14emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chr... 36 7.1
15gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 36 7.1
16gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, co... 36 7.1
17gb|AC132082.3| Mus musculus BAC clone RP24-511K23 from 1, comple... 36 7.1
18emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chrom... 36 7.1
19emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on ch... 36 7.1

>gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, complete sequence
          Length = 196738

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   aacccaaccctcccccaag 43
            |||||||||||||||||||
Sbjct: 4665 aacccaaccctcccccaag 4683



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>gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, complete sequence
          Length = 204127

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     cccaaccctcccccaagag 45
              |||||||||||||||||||
Sbjct: 142349 cccaaccctcccccaagag 142331



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>gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete sequence
          Length = 234834

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    aaccctcccccaagagaag 48
             |||||||||||||||||||
Sbjct: 71536 aaccctcccccaagagaag 71554



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>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence
          Length = 135612

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    aacccaaccctcccccaag 43
             |||||||||||||||||||
Sbjct: 73612 aacccaaccctcccccaag 73630



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>gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, complete sequence
          Length = 203403

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    cccaaccctcccccaagag 45
             |||||||||||||||||||
Sbjct: 61178 cccaaccctcccccaagag 61196



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>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   aacccaaccctcccccaag 43
            |||||||||||||||||||
Sbjct: 8822 aacccaaccctcccccaag 8804



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>gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chromosome 4, complete
             sequence
          Length = 166748

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 29    caaccctcccccaagagaagaa 50
             ||||||| ||||||||||||||
Sbjct: 47142 caacccttccccaagagaagaa 47121



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>gb|AC101652.8| Mus musculus chromosome 1, clone RP23-58D20, complete sequence
          Length = 168183

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     ctcccccaagagaagaag 51
              ||||||||||||||||||
Sbjct: 148549 ctcccccaagagaagaag 148532



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>gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence
          Length = 163897

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    aacccaaccctcccccaa 42
             ||||||||||||||||||
Sbjct: 12121 aacccaaccctcccccaa 12104



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>emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chromosome 1 Contains the
             DUSP10 gene for dual specificity phosphatase 10 (DUSP10),
             a novel gene and a CpG island, complete sequence
          Length = 165588

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 29    caaccctcccccaagagaagaa 50
             ||||||| ||||||||||||||
Sbjct: 32164 caacccttccccaagagaagaa 32143



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>emb|BX957248.11| Zebrafish DNA sequence from clone DKEY-195J22 in linkage group 13,
             complete sequence
          Length = 77299

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    aacccaaccctcccccaa 42
             ||||||||||||||||||
Sbjct: 20688 aacccaaccctcccccaa 20705



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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    cccaaccctcccccaaga 44
             ||||||||||||||||||
Sbjct: 47184 cccaaccctcccccaaga 47201



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>gb|AF369029.2| White spot syndrome virus, complete genome
          Length = 292967

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    cccaaccctcccccaaga 44
             ||||||||||||||||||
Sbjct: 96136 cccaaccctcccccaaga 96153



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>emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chromosome 2, complete
            sequence
          Length = 199494

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 35   tcccccaagagaagaagg 52
            ||||||||||||||||||
Sbjct: 5230 tcccccaagagaagaagg 5213



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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    cccaaccctcccccaaga 44
             ||||||||||||||||||
Sbjct: 80765 cccaaccctcccccaaga 80782



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>gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, complete sequence
          Length = 151388

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 32    ccctcccccaagagaaga 49
             ||||||||||||||||||
Sbjct: 33689 ccctcccccaagagaaga 33706



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>gb|AC132082.3| Mus musculus BAC clone RP24-511K23 from 1, complete sequence
          Length = 165033

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 34    ctcccccaagagaagaag 51
             ||||||||||||||||||
Sbjct: 38491 ctcccccaagagaagaag 38508



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>emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chromosome 12, complete
             sequence
          Length = 203805

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    aacccaaccctcccccaa 42
             ||||||||||||||||||
Sbjct: 72722 aacccaaccctcccccaa 72705



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>emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on chromosome 2, complete
              sequence
          Length = 191052

 Score = 36.2 bits (18), Expect = 7.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 32     ccctcccccaagagaaga 49
              ||||||||||||||||||
Sbjct: 110777 ccctcccccaagagaaga 110794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 401,919
Number of Sequences: 3902068
Number of extensions: 401919
Number of successful extensions: 97866
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97824
Number of HSP's gapped (non-prelim): 42
length of query: 52
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 32
effective length of database: 17,155,003,908
effective search space: 548960125056
effective search space used: 548960125056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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