>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence
          Length = 154206

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 13     tcgctcgctcgctcctctccgg 34
              ||||||||||||||||||||||
Sbjct: 112266 tcgctcgctcgctcctctccgg 112287

>gb|AC108415.10| Mus musculus chromosome 15, clone RP23-341K14, complete sequence
          Length = 194640

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 13    tcgctcgctcgctcctctccgg 34
             ||||||||||||||||||||||
Sbjct: 32804 tcgctcgctcgctcctctccgg 32825

>gb|AC109826.4| Homo sapiens BAC clone RP11-764D5 from 2, complete sequence
          Length = 87746

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 313   cccctgctcctcggaccgttcggcgccccccacctgc 349
             ||||||| ||||||||||| |||| || |||||||||
Sbjct: 23454 cccctgcgcctcggaccgtccggccccgcccacctgc 23490

>gb|AC096656.1| Homo sapiens BAC clone RP11-20F18 from 2, complete sequence
          Length = 176167

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   ctctctctcgctcgctccaca 169
             |||||||||||||||||||||
Sbjct: 32250 ctctctctcgctcgctccaca 32270

>gb|AC168212.7| Mus musculus chromosome 18, clone RP23-290N19, complete sequence
          Length = 197719

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     tcgctcgctcgctcctctcc 32
              ||||||||||||||||||||
Sbjct: 152925 tcgctcgctcgctcctctcc 152944

>ref|XM_469962.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1796

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 333 cggcgccccccacctgctcgtcgg 356
           |||||||| |||||||||||||||
Sbjct: 302 cggcgcccaccacctgctcgtcgg 279

>ref|NM_000405.3| Homo sapiens GM2 ganglioside activator (GM2A), mRNA
          Length = 2521

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 2373 ccctctcttccttggacccc 2354

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gtgcgccgcgccgatctcct 53
              ||||||||||||||||||||
Sbjct: 482321 gtgcgccgcgccgatctcct 482340

>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 333   cggcgccccccacctgctcgtcgg 356
             |||||||| |||||||||||||||
Sbjct: 27495 cggcgcccaccacctgctcgtcgg 27518

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 333      cggcgccccccacctgctcgtcgg 356
                |||||||| |||||||||||||||
Sbjct: 32716412 cggcgcccaccacctgctcgtcgg 32716389

>ref|XM_538893.2| PREDICTED: Canis familiaris similar to Proto-oncogene
           serine/threonine-protein kinase Pim-1 (LOC481772), mRNA
          Length = 2472

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 241 cgccggcgtgtgcgcacgccgccagccc 268
           ||||||||||| ||| ||||||||||||
Sbjct: 471 cgccggcgtgtccgcccgccgccagccc 498

>ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich interactive domain
           1A (SWI- like) isoform c, transcript variant 3
           (LOC487352), mRNA
          Length = 7836

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tcgctcgctcgctcctctcc 32
           ||||||||||||||||||||
Sbjct: 225 tcgctcgctcgctcctctcc 206

>ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich interactive domain
           1A (SWI- like) isoform c, transcript variant 2
           (LOC487352), mRNA
          Length = 7595

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tcgctcgctcgctcctctcc 32
           ||||||||||||||||||||
Sbjct: 225 tcgctcgctcgctcctctcc 206

>ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich interactive domain
           1A (SWI- like) isoform c, transcript variant 1
           (LOC487352), mRNA
          Length = 8487

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tcgctcgctcgctcctctcc 32
           ||||||||||||||||||||
Sbjct: 225 tcgctcgctcgctcctctcc 206

>gb|AY098743.2| Oryza sativa (japonica cultivar-group) globulin-like protein mRNA,
           complete cds
          Length = 1779

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 333 cggcgccccccacctgctcgtcgg 356
           |||||||| |||||||||||||||
Sbjct: 268 cggcgcccaccacctgctcgtcgg 245

>emb|AL353695.7| Human DNA sequence from clone RP11-17L7 on chromosome 9 Contains the 5'
             end of the FUBP3 gene for far upstream element (FUSE)
             binding protein 3 (FBP3) and a CpG island, complete
             sequence
          Length = 84661

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   ctctctctcgctcgctccac 168
             ||||||||||||||||||||
Sbjct: 22337 ctctctctcgctcgctccac 22318

>gb|AC069435.19| Homo sapiens 3 BAC RP11-384L1 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 111861

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 9478 ccctctcttccttggacccc 9459

>emb|CR626644.1| full-length cDNA clone CS0DL003YG14 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 2338

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 2262 ccctctcttccttggacccc 2243

>gb|AC008385.7| Homo sapiens chromosome 5 clone CTC-224D3, complete sequence
          Length = 151712

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ccctctcttccttggacccc 285
             ||||||||||||||||||||
Sbjct: 90268 ccctctcttccttggacccc 90287

>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    atctcgcgccgccggagccg 188
              ||||||||||||||||||||
Sbjct: 588478 atctcgcgccgccggagccg 588497

>gb|AC011342.5| Homo sapiens chromosome 5 clone CTC-276H5, complete sequence
          Length = 120584

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 9562 ccctctcttccttggacccc 9581

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 333      cggcgccccccacctgctcgtcgg 356
                |||||||| |||||||||||||||
Sbjct: 32806922 cggcgcccaccacctgctcgtcgg 32806899

>gb|AE009582.1| Brucella melitensis 16M chromosome I, section 139 of 195 of the
            complete sequence
          Length = 11614

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   gtgcgccgcgccgatctcct 53
            ||||||||||||||||||||
Sbjct: 2109 gtgcgccgcgccgatctcct 2090

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     cgcgccgccggagccggacc 192
               ||||||||||||||||||||
Sbjct: 1893745 cgcgccgccggagccggacc 1893764

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gtgcgccgcgccgatctcct 53
              ||||||||||||||||||||
Sbjct: 504157 gtgcgccgcgccgatctcct 504176

>dbj|AB125172.1| Macaca fascicularis GM2A mRNA for GM2 ganglioside activator protein,
            complete cds
          Length = 1900

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 1751 ccctctcttccttggacccc 1732

>dbj|AK121667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K06, full
           insert sequence
          Length = 1702

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 333 cggcgccccccacctgctcgtcgg 356
           |||||||| |||||||||||||||
Sbjct: 303 cggcgcccaccacctgctcgtcgg 280

>gb|BC009273.2| Homo sapiens GM2 ganglioside activator, mRNA (cDNA clone MGC:10462
            IMAGE:4053681), complete cds
          Length = 2413

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 2265 ccctctcttccttggacccc 2246

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     tcgcgccgccggagccggac 191
               ||||||||||||||||||||
Sbjct: 3190186 tcgcgccgccggagccggac 3190167

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gtgcgccgcgccgatctcct 53
              ||||||||||||||||||||
Sbjct: 500452 gtgcgccgcgccgatctcct 500471

>emb|X62078.1|HSGM2APT H.sapiens mRNA for GM2 activator protein
          Length = 2436

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccctctcttccttggacccc 285
            ||||||||||||||||||||
Sbjct: 2298 ccctctcttccttggacccc 2279


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,835,863
Number of Sequences: 3902068
Number of extensions: 1835863
Number of successful extensions: 39033
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38534
Number of HSP's gapped (non-prelim): 499
length of query: 359
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 337
effective length of database: 17,147,199,772
effective search space: 5778606323164
effective search space used: 5778606323164
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)