ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 319 5e-84
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 319 5e-84
3emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa... 319 5e-84
4emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa... 319 5e-84
5gb|AY224547.1| Oryza sativa (japonica cultivar-group) isolate 24... 210 3e-51
6ref|XM_468999.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 4e-04
8gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genom... 54 4e-04
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10gb|AC005312.3| Arabidopsis thaliana chromosome 2 clone T16F16 ma... 44 0.41
11emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on ch... 44 0.41
12gb|AY814639.1| Schistosoma japonicum SJCHGC09440 protein mRNA, c... 42 1.6
13emb|CR388042.8| Zebrafish DNA sequence from clone CH211-254C12 i... 42 1.6
14emb|CR376783.22| Zebrafish DNA sequence from clone DKEY-41N20 in... 42 1.6
15emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in... 42 1.6
16emb|CR847821.11| Zebrafish DNA sequence from clone DKEY-87I10 in... 42 1.6
17emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 i... 42 1.6
18emb|BX546488.10| Zebrafish DNA sequence from clone RP71-7A17 in ... 42 1.6
19emb|CR790376.10| Zebrafish DNA sequence from clone DKEY-66K12 in... 42 1.6
20emb|CR376838.7| Zebrafish DNA sequence from clone DKEY-15F23 in ... 42 1.6
21emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 i... 42 1.6
22emb|BX571843.19| Zebrafish DNA sequence from clone DKEY-250K10 i... 42 1.6
23emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in... 42 1.6
24emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 i... 42 1.6
25emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in l... 42 1.6
26emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 ... 42 1.6
27emb|BX649506.13| Zebrafish DNA sequence from clone DKEY-43L23 in... 42 1.6
28emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 i... 42 1.6
29emb|BX571958.11| Zebrafish DNA sequence from clone DKEY-240E12 i... 42 1.6
30emb|BX890539.20| Zebrafish DNA sequence from clone CH211-241B2, ... 42 1.6
31emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22,... 42 1.6
32emb|BX539341.8| Zebrafish DNA sequence from clone DKEY-3P4 in li... 42 1.6
33emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 ... 42 1.6
34emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, ... 42 1.6
35emb|CR936376.10| Zebrafish DNA sequence from clone CH211-156P11 ... 42 1.6
36emb|CR388087.28| Zebrafish DNA sequence from clone DKEY-19N7 in ... 42 1.6
37emb|CR769772.26| Zebrafish DNA sequence from clone CH211-12H2 in... 42 1.6
38emb|AL928967.9| Zebrafish DNA sequence from clone CH211-153A8, c... 42 1.6
39emb|AL845437.14| Zebrafish DNA sequence from clone DKEY-98J1 in ... 42 1.6
40emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in... 42 1.6
41ref|XM_515870.1| PREDICTED: Pan troglodytes similar to sodium ch... 40 6.4
42gb|BC029489.1| Homo sapiens sodium channel, voltage-gated, type ... 40 6.4
43ref|NM_001040142.1| Homo sapiens sodium channel, voltage-gated, ... 40 6.4
44ref|NM_021007.2| Homo sapiens sodium channel, voltage-gated, typ... 40 6.4
45ref|NM_001040143.1| Homo sapiens sodium channel, voltage-gated, ... 40 6.4
46gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome... 40 6.4
47emb|Z78540.1|CEC33G3 Caenorhabditis elegans Cosmid C33G3, comple... 40 6.4
48emb|CR936240.10| Zebrafish DNA sequence from clone DKEY-233K19 i... 40 6.4
49emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on ch... 40 6.4
50gb|BC047398.1| Homo sapiens sodium channel, voltage-gated, type ... 40 6.4
51gb|BC048417.1| Homo sapiens sodium channel, voltage-gated, type ... 40 6.4
52emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in ... 40 6.4
53ref|XM_627440.1| Cryptosporidium parvum Iowa II inactive CPSFs C... 40 6.4
54gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome... 40 6.4
55gb|AF327231.1|F327224S08 Homo sapiens voltage-gated sodium chann... 40 6.4
56gb|AC011303.9| Homo sapiens BAC clone RP11-342D6 from 2, complet... 40 6.4
57dbj|AB114834.1| Physcomitrella patens PpPLC1 mRNA for phosphoino... 40 6.4
58gb|BC112374.1| Mus musculus hypothetical protein 9430083I22, mRN... 40 6.4
59gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Can... 40 6.4
60gb|BC111869.1| Mus musculus hypothetical protein 9430083I22, mRN... 40 6.4
61gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 6.4
62dbj|AB208888.1| Homo sapiens mRNA for Sodium channel protein typ... 40 6.4
63emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr... 40 6.4
64emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chr... 40 6.4
65gb|U03987.1|MMU03987 Mus musculus DBA/2J interleukin-1 beta gene... 40 6.4
66gb|M94055.1|HUMHBAX Human voltage-gated sodium channel mRNA, com... 40 6.4 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  319 bits (161), Expect = 5e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                            
Query: 7        gtgaaagcgctgtatgttgagaatctgatgcagctggagaggacgttggagaaaaatgct 66
                |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 25574186 gtgaaagccctgtatgttgataatctgatgcagctcgagaggacgttggagagaaatgct 25574127

                                                                            
Query: 67       catttggagagatctttgtcagctgctactaccgaagttgcaggattgagacagaataag 126
                || || ||||| |||||||||||||| || || || |||| || |||| || |||| |||
Sbjct: 25574126 cacttagagaggtctttgtcagctgcaaccactgaggttgaagaattgcgagagaagaag 25574067

                                                                            
Query: 127      gccacattggaagaatcttgcaagcagcttagctccaagattaatggccacctgtctgac 186
                |   ||||||||||||| |||||||| || |  |||||||||||||||  ||  ||||| 
Sbjct: 25574066 gttgcattggaagaatcatgcaagcacctcaattccaagattaatggcttccaatctgag 25574007

                                                                            
Query: 187      cgtgccatgttcattgcacggattgagggtatttctcataccatggagaagctatcagag 246
                ||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 25574006 cggtccatgttcattgcacggatcgagggcatttctcatacaatggagaagctatcagag 25573947

                                                                            
Query: 247      aagaacgtgtttttggaaaatttgttatctgaaaacaatactgagcttgaaaaccataga 306
                || ||||| ||  |||||||||||||||||||||||||||| |||||||| | ||  |||
Sbjct: 25573946 aaaaacgtattcctggaaaatttgttatctgaaaacaataccgagcttgagatcctcaga 25573887

                                                                            
Query: 307      aggaagcttaaagacttggaagagtctgcgcaggcactccgcaatcagaattctttactt 366
                |||||||| || |||| |||||||||  | || ||||| |  |||||||||||| |||||
Sbjct: 25573886 aggaagctgaatgactcggaagagtccacacatgcactacttaatcagaattctgtactt 25573827

                                                 
Query: 367      cgatctgacaagagaactcttgttcatgaggta 399
                |||||||| |||||||| ||||| | |||||||
Sbjct: 25573826 cgatctgaaaagagaacccttgtgcgtgaggta 25573794
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  319 bits (161), Expect = 5e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                            
Query: 7        gtgaaagcgctgtatgttgagaatctgatgcagctggagaggacgttggagaaaaatgct 66
                |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 25502362 gtgaaagccctgtatgttgataatctgatgcagctcgagaggacgttggagagaaatgct 25502303

                                                                            
Query: 67       catttggagagatctttgtcagctgctactaccgaagttgcaggattgagacagaataag 126
                || || ||||| |||||||||||||| || || || |||| || |||| || |||| |||
Sbjct: 25502302 cacttagagaggtctttgtcagctgcaaccactgaggttgaagaattgcgagagaagaag 25502243

                                                                            
Query: 127      gccacattggaagaatcttgcaagcagcttagctccaagattaatggccacctgtctgac 186
                |   ||||||||||||| |||||||| || |  |||||||||||||||  ||  ||||| 
Sbjct: 25502242 gttgcattggaagaatcatgcaagcacctcaattccaagattaatggcttccaatctgag 25502183

                                                                            
Query: 187      cgtgccatgttcattgcacggattgagggtatttctcataccatggagaagctatcagag 246
                ||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 25502182 cggtccatgttcattgcacggatcgagggcatttctcatacaatggagaagctatcagag 25502123

                                                                            
Query: 247      aagaacgtgtttttggaaaatttgttatctgaaaacaatactgagcttgaaaaccataga 306
                || ||||| ||  |||||||||||||||||||||||||||| |||||||| | ||  |||
Sbjct: 25502122 aaaaacgtattcctggaaaatttgttatctgaaaacaataccgagcttgagatcctcaga 25502063

                                                                            
Query: 307      aggaagcttaaagacttggaagagtctgcgcaggcactccgcaatcagaattctttactt 366
                |||||||| || |||| |||||||||  | || ||||| |  |||||||||||| |||||
Sbjct: 25502062 aggaagctgaatgactcggaagagtccacacatgcactacttaatcagaattctgtactt 25502003

                                                 
Query: 367      cgatctgacaagagaactcttgttcatgaggta 399
                |||||||| |||||||| ||||| | |||||||
Sbjct: 25502002 cgatctgaaaagagaacccttgtgcgtgaggta 25501970
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>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144084

 Score =  319 bits (161), Expect = 5e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                          
Query: 7      gtgaaagcgctgtatgttgagaatctgatgcagctggagaggacgttggagaaaaatgct 66
              |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 143568 gtgaaagccctgtatgttgataatctgatgcagctcgagaggacgttggagagaaatgct 143509

                                                                          
Query: 67     catttggagagatctttgtcagctgctactaccgaagttgcaggattgagacagaataag 126
              || || ||||| |||||||||||||| || || || |||| || |||| || |||| |||
Sbjct: 143508 cacttagagaggtctttgtcagctgcaaccactgaggttgaagaattgcgagagaagaag 143449

                                                                          
Query: 127    gccacattggaagaatcttgcaagcagcttagctccaagattaatggccacctgtctgac 186
              |   ||||||||||||| |||||||| || |  |||||||||||||||  ||  ||||| 
Sbjct: 143448 gttgcattggaagaatcatgcaagcacctcaattccaagattaatggcttccaatctgag 143389

                                                                          
Query: 187    cgtgccatgttcattgcacggattgagggtatttctcataccatggagaagctatcagag 246
              ||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 143388 cggtccatgttcattgcacggatcgagggcatttctcatacaatggagaagctatcagag 143329

                                                                          
Query: 247    aagaacgtgtttttggaaaatttgttatctgaaaacaatactgagcttgaaaaccataga 306
              || ||||| ||  |||||||||||||||||||||||||||| |||||||| | ||  |||
Sbjct: 143328 aaaaacgtattcctggaaaatttgttatctgaaaacaataccgagcttgagatcctcaga 143269

                                                                          
Query: 307    aggaagcttaaagacttggaagagtctgcgcaggcactccgcaatcagaattctttactt 366
              |||||||| || |||| |||||||||  | || ||||| |  |||||||||||| |||||
Sbjct: 143268 aggaagctgaatgactcggaagagtccacacatgcactacttaatcagaattctgtactt 143209

                                               
Query: 367    cgatctgacaagagaactcttgttcatgaggta 399
              |||||||| |||||||| ||||| | |||||||
Sbjct: 143208 cgatctgaaaagagaacccttgtgcgtgaggta 143176
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>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127003

 Score =  319 bits (161), Expect = 5e-84
 Identities = 335/393 (85%)
 Strand = Plus / Plus

                                                                         
Query: 7     gtgaaagcgctgtatgttgagaatctgatgcagctggagaggacgttggagaaaaatgct 66
             |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 99532 gtgaaagccctgtatgttgataatctgatgcagctcgagaggacgttggagagaaatgct 99591

                                                                         
Query: 67    catttggagagatctttgtcagctgctactaccgaagttgcaggattgagacagaataag 126
             || || ||||| |||||||||||||| || || || |||| || |||| || |||| |||
Sbjct: 99592 cacttagagaggtctttgtcagctgcaaccactgaggttgaagaattgcgagagaagaag 99651

                                                                         
Query: 127   gccacattggaagaatcttgcaagcagcttagctccaagattaatggccacctgtctgac 186
             |   ||||||||||||| |||||||| || |  |||||||||||||||  ||  ||||| 
Sbjct: 99652 gttgcattggaagaatcatgcaagcacctcaattccaagattaatggcttccaatctgag 99711

                                                                         
Query: 187   cgtgccatgttcattgcacggattgagggtatttctcataccatggagaagctatcagag 246
             ||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 99712 cggtccatgttcattgcacggatcgagggcatttctcatacaatggagaagctatcagag 99771

                                                                         
Query: 247   aagaacgtgtttttggaaaatttgttatctgaaaacaatactgagcttgaaaaccataga 306
             || ||||| ||  |||||||||||||||||||||||||||| |||||||| | ||  |||
Sbjct: 99772 aaaaacgtattcctggaaaatttgttatctgaaaacaataccgagcttgagatcctcaga 99831

                                                                         
Query: 307   aggaagcttaaagacttggaagagtctgcgcaggcactccgcaatcagaattctttactt 366
             |||||||| || |||| |||||||||  | || ||||| |  |||||||||||| |||||
Sbjct: 99832 aggaagctgaatgactcggaagagtccacacatgcactacttaatcagaattctgtactt 99891

                                              
Query: 367   cgatctgacaagagaactcttgttcatgaggta 399
             |||||||| |||||||| ||||| | |||||||
Sbjct: 99892 cgatctgaaaagagaacccttgtgcgtgaggta 99924
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>gb|AY224547.1| Oryza sativa (japonica cultivar-group) isolate 24091 centromere
           protein-like protein mRNA, partial cds
          Length = 1537

 Score =  210 bits (106), Expect = 3e-51
 Identities = 190/218 (87%)
 Strand = Plus / Plus

                                                                       
Query: 196 ttcattgcacggattgagggtatttctcataccatggagaagctatcagagaagaacgtg 255
           |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| 
Sbjct: 1   ttcattgcacggatcgagggcatttctcatacaatggagaagctatcagagaaaaacgta 60

                                                                       
Query: 256 tttttggaaaatttgttatctgaaaacaatactgagcttgaaaaccatagaaggaagctt 315
           ||  |||||||||||||||||||||||||||| |||||||| | ||  ||||||||||| 
Sbjct: 61  ttcctggaaaatttgttatctgaaaacaataccgagcttgagatcctcagaaggaagctg 120

                                                                       
Query: 316 aaagacttggaagagtctgcgcaggcactccgcaatcagaattctttacttcgatctgac 375
           || |||| |||||||||  | || ||||| |  |||||||||||| ||||||||||||| 
Sbjct: 121 aatgactcggaagagtccacacatgcactacttaatcagaattctgtacttcgatctgaa 180

                                                 
Query: 376 aagagaactcttgttcatgaggtagatagcatgaatgg 413
           |||||||| ||||| | |||||| ||||||||||||||
Sbjct: 181 aagagaacccttgtgcgtgaggtggatagcatgaatgg 218
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>ref|XM_468999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4836

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 134  tggaagaatcttgcaagcagcttagctccaagatt 168
            |||||||||| |||||||| |||||||||||||||
Sbjct: 1406 tggaagaatcatgcaagcaccttagctccaagatt 1440
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 134      tggaagaatcttgcaagcagcttagctccaagatt 168
                |||||||||| |||||||| |||||||||||||||
Sbjct: 24318054 tggaagaatcatgcaagcaccttagctccaagatt 24318020
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>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete
             sequence
          Length = 171664

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 134   tggaagaatcttgcaagcagcttagctccaagatt 168
             |||||||||| |||||||| |||||||||||||||
Sbjct: 62570 tggaagaatcatgcaagcaccttagctccaagatt 62604
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 134      tggaagaatcttgcaagcagcttagctccaagatt 168
                |||||||||| |||||||| |||||||||||||||
Sbjct: 24235523 tggaagaatcatgcaagcaccttagctccaagatt 24235489
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>gb|AC005312.3| Arabidopsis thaliana chromosome 2 clone T16F16 map CIC11A04, complete
            sequence
          Length = 74903

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 253  gtgtttttggaaaatttgttat 274
            ||||||||||||||||||||||
Sbjct: 3108 gtgtttttggaaaatttgttat 3129
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>emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on chromosome 12, complete
             sequence
          Length = 143997

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 442   gcagagttagaaggaaggcatt 463
             ||||||||||||||||||||||
Sbjct: 56500 gcagagttagaaggaaggcatt 56521
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>gb|AY814639.1| Schistosoma japonicum SJCHGC09440 protein mRNA, complete cds
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 54   ggagaaaaatgctcatttgga 74
            |||||||||||||||||||||
Sbjct: 1032 ggagaaaaatgctcatttgga 1052
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>emb|CR388042.8| Zebrafish DNA sequence from clone CH211-254C12 in linkage group 15,
             complete sequence
          Length = 158539

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 98582 gttggagaaaaatgctcattt 98602
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>emb|CR376783.22| Zebrafish DNA sequence from clone DKEY-41N20 in linkage group 13,
             complete sequence
          Length = 205064

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 89907 gttggagaaaaatgctcattt 89887
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>emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in linkage group 3, complete
              sequence
          Length = 222385

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 213713 gttggagaaaaatgctcattt 213733
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>emb|CR847821.11| Zebrafish DNA sequence from clone DKEY-87I10 in linkage group 14,
           complete sequence
          Length = 167652

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  gttggagaaaaatgctcattt 71
           |||||||||||||||||||||
Sbjct: 488 gttggagaaaaatgctcattt 508
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>emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 in linkage group 15
             Contains the 3' part of the odz4 gene (odd Oz/ten-m
             homolog 4) and a CpG island, complete sequence
          Length = 193544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 54944 gttggagaaaaatgctcattt 54924
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>emb|BX546488.10| Zebrafish DNA sequence from clone RP71-7A17 in linkage group 23,
             complete sequence
          Length = 102324

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 14390 gttggagaaaaatgctcattt 14370
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>emb|CR790376.10| Zebrafish DNA sequence from clone DKEY-66K12 in linkage group 4,
             complete sequence
          Length = 92591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 28648 gttggagaaaaatgctcattt 28668
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>emb|CR376838.7| Zebrafish DNA sequence from clone DKEY-15F23 in linkage group 14,
              complete sequence
          Length = 256006

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 137685 gttggagaaaaatgctcattt 137665
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>emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 in linkage group 17,
             complete sequence
          Length = 155486

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 93804 gttggagaaaaatgctcattt 93824
to top
>emb|BX571843.19| Zebrafish DNA sequence from clone DKEY-250K10 in linkage group 14,
             complete sequence
          Length = 137288

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 80260 gttggagaaaaatgctcattt 80240
to top
>emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in linkage group 1,
             complete sequence
          Length = 221617

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 23213 gttggagaaaaatgctcattt 23233
to top
>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8,
              complete sequence
          Length = 206751

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 145987 gttggagaaaaatgctcattt 146007
to top
>emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in linkage group 24, complete
              sequence
          Length = 213917

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 127140 gttggagaaaaatgctcattt 127160
to top
>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14,
              complete sequence
          Length = 198761

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 146774 gttggagaaaaatgctcattt 146754
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>emb|BX649506.13| Zebrafish DNA sequence from clone DKEY-43L23 in linkage group 22,
             complete sequence
          Length = 110752

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 59909 gttggagaaaaatgctcattt 59889
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>emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 in linkage group 18,
              complete sequence
          Length = 159047

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 144449 gttggagaaaaatgctcattt 144469
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>emb|BX571958.11| Zebrafish DNA sequence from clone DKEY-240E12 in linkage group 22,
              complete sequence
          Length = 221392

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 194901 gttggagaaaaatgctcattt 194921
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>emb|BX890539.20| Zebrafish DNA sequence from clone CH211-241B2, complete sequence
          Length = 164402

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 24532 gttggagaaaaatgctcattt 24552
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>emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22, complete sequence
          Length = 186714

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 127384 gttggagaaaaatgctcattt 127404
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>emb|BX539341.8| Zebrafish DNA sequence from clone DKEY-3P4 in linkage group 22, complete
              sequence
          Length = 236484

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 110549 gttggagaaaaatgctcattt 110529
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>emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18,
              complete sequence
          Length = 243552

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 122912 gttggagaaaaatgctcattt 122932
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>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence
          Length = 148678

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    gttggagaaaaatgctcattt 71
             |||||||||||||||||||||
Sbjct: 20707 gttggagaaaaatgctcattt 20687
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>emb|CR936376.10| Zebrafish DNA sequence from clone CH211-156P11 in linkage group 22,
            complete sequence
          Length = 21091

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   gttggagaaaaatgctcattt 71
            |||||||||||||||||||||
Sbjct: 8048 gttggagaaaaatgctcattt 8028
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>emb|CR388087.28| Zebrafish DNA sequence from clone DKEY-19N7 in linkage group 22, complete
              sequence
          Length = 210107

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 175482 gttggagaaaaatgctcattt 175462
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>emb|CR769772.26| Zebrafish DNA sequence from clone CH211-12H2 in linkage group 2,
            complete sequence
          Length = 212945

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   gttggagaaaaatgctcattt 71
            |||||||||||||||||||||
Sbjct: 4911 gttggagaaaaatgctcattt 4891
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>emb|AL928967.9| Zebrafish DNA sequence from clone CH211-153A8, complete sequence
          Length = 186487

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 113986 gttggagaaaaatgctcattt 113966
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>emb|AL845437.14| Zebrafish DNA sequence from clone DKEY-98J1 in linkage group 23, complete
              sequence
          Length = 239084

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 145342 gttggagaaaaatgctcattt 145362
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>emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in linkage group 14,
              complete sequence
          Length = 193551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     gttggagaaaaatgctcattt 71
              |||||||||||||||||||||
Sbjct: 142100 gttggagaaaaatgctcattt 142080
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>ref|XM_515870.1| PREDICTED: Pan troglodytes similar to sodium channel,
           voltage-gated, type II, alpha 2; sodium channel,
           voltage-gated, type II, alpha 2 polypeptide (LOC459701),
           mRNA
          Length = 931

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 acagaataaggccacattggaaga 140
           ||||||| ||||||||||||||||
Sbjct: 15  acagaatcaggccacattggaaga 38
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>gb|BC029489.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2, mRNA
            (cDNA clone IMAGE:5278436), partial cds
          Length = 1777

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1537 acagaatcaggccacattggaaga 1560
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>ref|NM_001040142.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2
            (SCN2A2), transcript variant 2, mRNA
          Length = 8810

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1580 acagaatcaggccacattggaaga 1603
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>ref|NM_021007.2| Homo sapiens sodium channel, voltage-gated, type II, alpha 2
            (SCN2A2), transcript variant 1, mRNA
          Length = 8876

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1646 acagaatcaggccacattggaaga 1669
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>ref|NM_001040143.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2
            (SCN2A2), transcript variant 3, mRNA
          Length = 8571

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1341 acagaatcaggccacattggaaga 1364
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>gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome 9, complete sequence
          Length = 228144

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    aactcttgttcatgaggtag 400
              ||||||||||||||||||||
Sbjct: 208567 aactcttgttcatgaggtag 208586
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>emb|Z78540.1|CEC33G3 Caenorhabditis elegans Cosmid C33G3, complete sequence
          Length = 33658

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tttttggaaaatttgttatc 275
             ||||||||||||||||||||
Sbjct: 12549 tttttggaaaatttgttatc 12530
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>emb|CR936240.10| Zebrafish DNA sequence from clone DKEY-233K19 in linkage group 16,
              complete sequence
          Length = 169758

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 387    tgttcatgaggtagatagcatgaa 410
              ||||||||||||||||||| ||||
Sbjct: 123244 tgttcatgaggtagatagcctgaa 123267
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>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the
              3' end of the gene similar to G protein coupled receptor
              affecting testicular descent (H. sapiens)(GREAT)and a CpG
              island, complete sequence
          Length = 170522

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ggagaagctatcagagaaga 250
              ||||||||||||||||||||
Sbjct: 151790 ggagaagctatcagagaaga 151771
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>gb|BC047398.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2, mRNA
            (cDNA clone IMAGE:5303139), partial cds
          Length = 1767

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1537 acagaatcaggccacattggaaga 1560
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>gb|BC048417.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2, mRNA
            (cDNA clone IMAGE:5288836), partial cds
          Length = 1777

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1537 acagaatcaggccacattggaaga 1560
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>emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in linkage group 11
             Contains three novel genes, the opn1lw1 gene for opsin 1
             (cone pigments), long-wave-sensitive, 1, a gene for novel
             protein similar to human and rodent member RAS oncogene
             family RAB7 (RAB7), a gene for novel protein remotely
             similar to human host cell factor 1 (VP16-accessory
             protein) (HCFC1), the opn1sw2 gene for opsin 1 (cone
             pigments), short-wave-sensitive 1, a gene for novel
             protein similar to human and mouse CpG binding protein
             (CGBP), a gene for novel protein similar to vertebrate
             microphthalmia-associated transcription factor (MITF) and
             zebrafish transcription factor binding to IGHM enhancer 3a
             (tfe3a), a gene for novel protein similar to human and
             rodent catechol-O-methyltransferase (COMT), the flj10613l
             gene for hypothetical protein FLJ10613-like (H. sapiens),
             a gene for novel protein similar to human and mouse
             methyl-CpG binding domain protein 1 (MBD1), a gene for
             novel protein similar to zebrafish red-sensitive opsin
             (rdops), a gene for novel protein similar to mouse and
             human host cell factor C1 (VP16-accessory protein)
             (HCFC1), a gene for novel protein similar to human and
             rodent metabotropic glutamate receptors (GRM) and two CpG
             islands, complete sequence
          Length = 235174

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    ttggagaaaaatgctcattt 71
             ||||||||||||||||||||
Sbjct: 16863 ttggagaaaaatgctcattt 16844
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>ref|XM_627440.1| Cryptosporidium parvum Iowa II inactive CPSFs Cft2p
           metallobeta-lactamase (cgd6_580), partial mRNA
          Length = 3591

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 tgtttttggaaaatttgtta 273
           ||||||||||||||||||||
Sbjct: 180 tgtttttggaaaatttgtta 161
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>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence
          Length = 195269

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    aactcttgttcatgaggtag 400
              ||||||||||||||||||||
Sbjct: 124342 aactcttgttcatgaggtag 124323
to top
>gb|AF327231.1|F327224S08 Homo sapiens voltage-gated sodium channel type II alpha subunit
           (SCN2A) gene, exons 9 and 10
          Length = 629

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 acagaataaggccacattggaaga 140
           ||||||| ||||||||||||||||
Sbjct: 466 acagaatcaggccacattggaaga 489
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>gb|AC011303.9| Homo sapiens BAC clone RP11-342D6 from 2, complete sequence
          Length = 188616

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   acagaataaggccacattggaaga 140
             ||||||| ||||||||||||||||
Sbjct: 42582 acagaatcaggccacattggaaga 42605
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>dbj|AB114834.1| Physcomitrella patens PpPLC1 mRNA for phosphoinositide-specific
            phospholipase C, complete cds
          Length = 2430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  gttgcaggattgagacagaa 122
            ||||||||||||||||||||
Sbjct: 2111 gttgcaggattgagacagaa 2092
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>gb|BC112374.1| Mus musculus hypothetical protein 9430083I22, mRNA (cDNA clone
            MGC:132797 IMAGE:40056987), complete cds
          Length = 1949

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  agaaggaagcttaaagactt 323
            ||||||||||||||||||||
Sbjct: 1456 agaaggaagcttaaagactt 1475
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>gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    aaaacaatactgagcttgaa 297
              ||||||||||||||||||||
Sbjct: 147211 aaaacaatactgagcttgaa 147192
to top
>gb|BC111869.1| Mus musculus hypothetical protein 9430083I22, mRNA (cDNA clone
            MGC:132798 IMAGE:40056992), complete cds
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  agaaggaagcttaaagactt 323
            ||||||||||||||||||||
Sbjct: 1458 agaaggaagcttaaagactt 1477
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   ggagaagctatcagagaaga 250
             ||||||||||||||||||||
Sbjct: 35258 ggagaagctatcagagaaga 35239
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>dbj|AB208888.1| Homo sapiens mRNA for Sodium channel protein type II alpha subunit
            variant protein
          Length = 11847

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1433 acagaatcaggccacattggaaga 1456
to top
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tttgttatctgaaaacaata 286
              ||||||||||||||||||||
Sbjct: 162575 tttgttatctgaaaacaata 162594
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>emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chromosome 2, complete
             sequence
          Length = 202474

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   agaaggaagcttaaagactt 323
             ||||||||||||||||||||
Sbjct: 22898 agaaggaagcttaaagactt 22917
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>gb|U03987.1|MMU03987 Mus musculus DBA/2J interleukin-1 beta gene, 5' flanking sequence
          Length = 4139

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 agaaggaagcttaaagactt 323
           ||||||||||||||||||||
Sbjct: 648 agaaggaagcttaaagactt 629
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>gb|M94055.1|HUMHBAX Human voltage-gated sodium channel mRNA, complete cds
          Length = 6328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  acagaataaggccacattggaaga 140
            ||||||| ||||||||||||||||
Sbjct: 1395 acagaatcaggccacattggaaga 1418


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,575,659
Number of Sequences: 3902068
Number of extensions: 4575659
Number of successful extensions: 85437
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85215
Number of HSP's gapped (non-prelim): 213
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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