ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13h11 |
|---|---|
| Clone Library Name | barley_pub |
>TILS_PROMM (Q7V987) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 343 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 30 IPTRSHLTWLWLEPASRPSAPAMREEVRSSSAAPADPP 143 I R+ L WL+ + PS PA++ E S S AP PP Sbjct: 282 ITARTTLLAYWLKRSGAPSLPAVQLEQISQSIAPGKPP 319
>D1IP_HUMAN (Q9NYX4) D1 dopamine receptor-interacting protein calcyon| Length = 217 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 33 PTRSHLTWLWLEPASRPSAPAMREEVRSSSAAPADPP 143 PT++ EP +PSA A +E R ++ + A PP Sbjct: 179 PTQAGAAAAATEPPGKPSAKAEKEAARKAAGSAAPPP 215
>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52| Length = 435 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +3 Query: 63 LEPASRPSAPAMREEVRSSSAAPADPPL 146 L PA RP A MR E ++ AP++PPL Sbjct: 198 LPPAPRPGA--MRPEAAHAAPAPSEPPL 223
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +3 Query: 12 SLPLSSIPTRSHLTWLWLEPASRPSAPAMREEVRSSSAAPADPP 143 S P+++ P+ T P + PS+P SS+ P+ PP Sbjct: 1682 SSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPP 1725
>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +3 Query: 6 HHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92 +H +P LS + ++ TW+W EP + PS P Sbjct: 439 NHFVPDRLSKLNVKTKETWVWQEPDTYPSEP 469
>MUTS_GEOKA (Q5L0E5) DNA mismatch repair protein mutS| Length = 896 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 12/41 (29%) Frame = +3 Query: 66 EPASRPSAPAMREEVRSSSA------------APADPPLRS 152 E ASRPSA A RE V + +A AP +PPL S Sbjct: 822 EKASRPSAGAAREGVLAEAAFEQLSMFPDLAPAPVEPPLSS 862
>RPE65_HUMAN (Q16518) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 6 HHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92 +H +P L + ++ TW+W EP S PS P Sbjct: 439 NHFVPDRLCKLNVKTKETWVWQEPDSYPSEP 469
>RPE65_CERAE (Q9XT71) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 6 HHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92 +H +P L + ++ TW+W EP S PS P Sbjct: 439 NHFVPDRLCKLNVKTKETWVWQEPDSYPSEP 469
>RPE65_CANFA (Q9TVB8) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 6 HHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92 +H +P L + ++ TW+W EP S PS P Sbjct: 439 NHFVPDRLCKLNVKTKETWVWQEPDSYPSEP 469
>RPE65_BOVIN (Q28175) Retinal pigment epithelium-specific 65 kDa protein| (Membrane receptor p63) Length = 532 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 6 HHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92 +H +P L + ++ TW+W EP S PS P Sbjct: 439 NHFVPDRLCKLNVKTKETWVWQEPDSYPSEP 469
>CISH_HUMAN (Q9NSE2) Cytokine-inducible SH2-containing protein (CIS) (CIS-1)| (Suppressor of cytokine signaling) (SOCS) (Protein G18) Length = 258 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 66 EPASRPSAPAMREEVRSSSAAPADPP 143 +PA P+ P +E+ S A PA PP Sbjct: 177 DPAPTPALPMPKEDAPSDPALPAPPP 202
>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 495 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -1 Query: 86 ARPRCGFQPEPGEVRPRRNRAQW 18 ++PR QP PGE +P+ ++ +W Sbjct: 385 SKPRALNQPHPGEKKPKASKDKW 407
>PURA_PHOPR (Q6LM35) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 432 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/34 (50%), Positives = 18/34 (52%) Frame = +2 Query: 8 PFAPTELDSDAVAPHLALAGTRIEAERARHERGG 109 PF PTELD DAV HL + G A R R G Sbjct: 278 PF-PTELD-DAVGEHLGVKGNEFGATTGRKRRCG 309
>RPE65_CHICK (Q9YGX2) Retinal pigment epithelium-specific 65 kDa protein| Length = 533 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 6 HHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92 +H +P L + ++ TW+W EP S PS P Sbjct: 440 NHFVPDRLCKLNVKTKETWVWQEPDSYPSEP 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,308,558 Number of Sequences: 219361 Number of extensions: 712855 Number of successful extensions: 2139 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2133 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
