ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13h08 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 72.8 bits (177), Expect = 2e-13 Identities = 41/114 (35%), Positives = 63/114 (55%) Frame = +2 Query: 53 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 232 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 233 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSFVGDARQTSSQVI 394 LKN++ A++ ARK Q W SL IK Q+K L TLGS A Q+++Q++ Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLV 114
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 60.5 bits (145), Expect = 1e-09 Identities = 35/101 (34%), Positives = 58/101 (57%) Frame = +2 Query: 53 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 232 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 233 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGS 355 +KNSL +KD K Q+W+++D + + ++K +L TLG+ Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT 101
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 60.5 bits (145), Expect = 1e-09 Identities = 35/101 (34%), Positives = 58/101 (57%) Frame = +2 Query: 53 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 232 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 233 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGS 355 +KNSL +KD K Q+W+++D + + ++K +L TLG+ Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT 101
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 53.9 bits (128), Expect = 9e-08 Identities = 34/101 (33%), Positives = 49/101 (48%) Frame = +2 Query: 53 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 232 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 233 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGS 355 LKN L +KD + +W I+ IK ++L LG+ Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGT 107
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 53.1 bits (126), Expect = 2e-07 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Frame = +2 Query: 86 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSA 265 SPD N+R +E +K+ N F S L ++ E R LA + LKN L +KDS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 266 RKELLIQQWVS-LDHSIKSQIKESLLITLGSFVGDARQTSSQVI 394 + + Q+W++ + K+QIK + L L S ++Q+I Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLI 119
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 50.1 bits (118), Expect = 1e-06 Identities = 32/101 (31%), Positives = 56/101 (55%) Frame = +2 Query: 53 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 232 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 233 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGS 355 ++ L +KD K Q+W+++D + + ++K +L TLG+ Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT 100
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +2 Query: 50 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 226 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 227 IILKNSLDA 253 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +2 Query: 50 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 226 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 227 IILKNSLDA 253 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 35.0 bits (79), Expect = 0.043 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +2 Query: 50 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 226 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 227 IILKNSLDA 253 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 35.0 bits (79), Expect = 0.043 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +2 Query: 50 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 226 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 227 IILKNSLDA 253 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +2 Query: 53 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 232 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 233 LK 238 L+ Sbjct: 61 LR 62
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -2 Query: 191 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 72 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 31.6 bits (70), Expect = 0.48 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = +2 Query: 122 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAKDSARKELLIQ 286 ++ + ++NL VE+ N DERP E+ R I K KD+ KELLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 287 QWVSLDHSIKSQ-IKESL 337 + + IKE L Sbjct: 259 HLKEFSEIVSEELIKERL 276
>IMB_XENLA (P52297) Importin beta subunit (Karyopherin beta subunit) (P97)| (Importin 90) (Fragments) Length = 260 Score = 30.8 bits (68), Expect = 0.81 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Frame = +2 Query: 56 DITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIIL 235 ++ IL SPD E Q +NLP F++ LS L+N P S+ Sbjct: 1 ELVTILEKTVSPDRRXLKFLE----QAAVENLPTFVVELSKVLAN---PANSQ------- 46 Query: 236 KNSLDAKDSARKELLIQQWVSLDHSIKSQI-KESLLITLGSFVGDARQTSSQV 391 ARK Q+W+++D + + +I KES L + D + S+ V Sbjct: 47 --------VARKAQYQQRWLAIDANARGEIKKESXLEAIDYIXQDIEEPSNNV 91
>KPYK_TRYBO (Q27788) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 498 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -3 Query: 115 CC*AKVTIWRLSS*QNLSDIHDCCTCPEERIC 20 CC +VT+W +++ + + ++ PEE IC Sbjct: 350 CCETQVTMWNMAAFEAIKNLQSFPLIPEEAIC 381
>DRL17_ARATH (O64790) Putative disease resistance protein At1g61300| Length = 766 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +2 Query: 125 IKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGI--ILKNSLDAKDSARKELLIQQWV 295 +K+ Q+ QNL + ++LS ELS ++R + GI L+ D A E L WV Sbjct: 535 LKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWV 594 Query: 296 SLDHSIKSQIKES 334 + + + +ES Sbjct: 595 KNSYFSEIKCRES 607
>AVE3_AVESA (P80356) Avenin-3 precursor (Prolamin)| Length = 220 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = -3 Query: 340 QQ*LLNLRFDRVIQADPLLN---QQLLPCRIFCVQ 245 QQ LL + ++Q PLL QQL PCR F VQ Sbjct: 41 QQMLLQQQQQMLLQQQPLLQVLQQQLNPCRQFLVQ 75
>KHA1_YEAST (P40309) K(+)/H(+) antiporter 1| Length = 873 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 19 GRFVLLGRCNSHGYHSDSASCSV 87 G ++LL C GY++D+ASCS+ Sbjct: 740 GLYLLLLICYRDGYNNDNASCSI 762
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +2 Query: 233 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSFVGDARQT 379 LK A S +ELL+Q SI S+I+ S+ + DAR+T Sbjct: 4518 LKEDTSASASQLEELLVQSEECSSESIVSEIQTSIAQKSNKEIKDARET 4566
>COX3_WHEAT (P15953) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 265 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 7/40 (17%) Frame = -2 Query: 197 FHHSITPPTRIGGSWEDSAPGTA*CW-------LLLLSEG 99 FH S+ P IGG W G W L+LLS G Sbjct: 105 FHSSLAPTVEIGGIWPPKGIGVLDPWEIPLLNTLILLSSG 144
>DXS_RHOCA (P26242) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 641 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +2 Query: 17 PADSFFWAGATVMDITQILLAAQSPDGNLR 106 P + + WAG T DI LAA P ++R Sbjct: 607 PEEMYAWAGLTANDIRDTALAAARPSKSVR 636
>DHSO_BACHD (Q9Z9U1) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol| 2-dehydrogenase) (Glucitol dehydrogenase) Length = 343 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = +2 Query: 170 LSVELSNDERPPESRRLAGIILKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLIT 346 +SV S ++P + ++ + ++AK E I +W H+IKS +L+T Sbjct: 282 ISVVGSRSQKPADWEPALSLLNEKKVNAKTLVTHEYTISEWDKAYHAIKSGEAIKVLLT 340
>TALA_POVBO (P24851) Large T antigen| Length = 586 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 227 IILKNSLDAKDSARKELLIQQWVSL 301 ++ K LD K R ELL+Q+W L Sbjct: 302 VLAKRRLDMKTLTRNELLVQRWQGL 326
>P2RX2_RAT (P49653) P2X purinoceptor 2 (ATP receptor) (P2X2) (Purinergic| receptor) Length = 472 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 19 GRFVLLGRCNSHGYHSDSASCSVSRW*P 102 G + G C + YH DS +C VS W P Sbjct: 139 GNGIRTGHCVPY-YHGDSKTCEVSAWCP 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,846,841 Number of Sequences: 219361 Number of extensions: 902680 Number of successful extensions: 2535 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2478 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2533 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
