ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome... 274 2e-70
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 274 2e-70
3dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 2e-70
4dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for ... 274 2e-70
5emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like pr... 258 1e-65
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.086
7gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.086
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
9gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC... 42 1.3
10emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Co... 42 1.3
11gb|AF020583.1|AF020583 Zamia furfuracea cytochrome c oxidase (co... 42 1.3
12gb|AF020577.1|AF020577 Stangeria eriopus cytochrome c oxidase (c... 42 1.3
13gb|AF020563.1|AF020563 Encephalartos lebomboensis cytochrome c o... 42 1.3
14gb|AF020562.1|AF020562 Cycas revoluta cytochrome c oxidase (coxI... 42 1.3
15gb|BC061828.1| Rattus norvegicus cDNA clone IMAGE:5599715, parti... 40 5.3
16gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Can... 40 5.3
17emb|BX070094.1|CNS09Q8Y Single read from an extremity of a full-... 40 5.3
18emb|BX066998.1|CNS09NUY Single read from an extremity of a full-... 40 5.3
19emb|BX063629.1|CNS09L9D Single read from an extremity of a full-... 40 5.3
20emb|BX034964.1|CNS08Z54 Single read from an extremity of a full-... 40 5.3
21emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
22gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, comple... 40 5.3
23gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Canc... 40 5.3
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
25gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete... 40 5.3
26dbj|AK105982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
27emb|AL139353.3|CNS01DXJ Human chromosome 14 DNA sequence BAC R-1... 40 5.3
28emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on ch... 40 5.3
29emb|AL672148.8| Mouse DNA sequence from clone RP23-369O15 on chr... 40 5.3
30emb|AL845172.3| Mouse DNA sequence from clone RP23-285J17 on chr... 40 5.3 
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10,
             complete sequence
          Length = 134183

 Score =  274 bits (138), Expect = 2e-70
 Identities = 297/350 (84%)
 Strand = Plus / Plus

                                                                         
Query: 47    acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 106
             |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 61880 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 61939

                                                                         
Query: 107   tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 166
               || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 61940 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 61999

                                                                         
Query: 167   tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 226
             |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 62000 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 62059

                                                                         
Query: 227   attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 286
             |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 62060 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 62119

                                                                         
Query: 287   caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 346
             |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 62120 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 62179

                                                               
Query: 347   ctaggatctttcgtgggtgatgcccggcagacgtcatcacaagtcattgc 396
             ||||||||||  |||  ||||||  |||| || |||||||||||||||||
Sbjct: 62180 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgc 62229
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  274 bits (138), Expect = 2e-70
 Identities = 297/350 (84%)
 Strand = Plus / Plus

                                                                            
Query: 47       acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 106
                |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 16563141 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 16563200

                                                                            
Query: 107      tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 166
                  || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 16563201 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 16563260

                                                                            
Query: 167      tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 226
                |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 16563261 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 16563320

                                                                            
Query: 227      attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 286
                |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 16563321 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 16563380

                                                                            
Query: 287      caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 346
                |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 16563381 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 16563440

                                                                  
Query: 347      ctaggatctttcgtgggtgatgcccggcagacgtcatcacaagtcattgc 396
                ||||||||||  |||  ||||||  |||| || |||||||||||||||||
Sbjct: 16563441 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgc 16563490
to top
>dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029L11, full
           insert sequence
          Length = 3150

 Score =  274 bits (138), Expect = 2e-70
 Identities = 297/350 (84%)
 Strand = Plus / Plus

                                                                       
Query: 47  acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 106
           |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 288 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 347

                                                                       
Query: 107 tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 166
             || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 348 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 407

                                                                       
Query: 167 tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 226
           |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 408 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 467

                                                                       
Query: 227 attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 286
           |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 468 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 527

                                                                       
Query: 287 caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 346
           |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 528 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 587

                                                             
Query: 347 ctaggatctttcgtgggtgatgcccggcagacgtcatcacaagtcattgc 396
           ||||||||||  |||  ||||||  |||| || |||||||||||||||||
Sbjct: 588 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgc 637
to top
>dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta1,
           complete cds
          Length = 3115

 Score =  274 bits (138), Expect = 2e-70
 Identities = 297/350 (84%)
 Strand = Plus / Plus

                                                                       
Query: 47  acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 106
           |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 248 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 307

                                                                       
Query: 107 tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 166
             || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 308 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 367

                                                                       
Query: 167 tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 226
           |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 368 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 427

                                                                       
Query: 227 attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 286
           |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 428 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 487

                                                                       
Query: 287 caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 346
           |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 488 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 547

                                                             
Query: 347 ctaggatctttcgtgggtgatgcccggcagacgtcatcacaagtcattgc 396
           ||||||||||  |||  ||||||  |||| || |||||||||||||||||
Sbjct: 548 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgc 597
to top
>emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like protein Imb2
          Length = 2838

 Score =  258 bits (130), Expect = 1e-65
 Identities = 277/326 (84%)
 Strand = Plus / Plus

                                                                       
Query: 71  ctgctagctgctcagtctccagatggtaaccttcgctcagcagcagaagccaacatcaag 130
           |||||| | ||||| ||| ||||||||||||||||   || ||||||||  ||| |||||
Sbjct: 8   ctgctatcagctcaatctgcagatggtaaccttcgggtagtagcagaagggaacctcaag 67

                                                                       
Query: 131 cagttccaggagcagaatcttcccaacttcctcctatccttgtcggtggagttatcgaat 190
           |||||||||||||||||||||||||||||||| || |||||||| |||||  | ||| ||
Sbjct: 68  cagttccaggagcagaatcttcccaacttccttctctccttgtcagtggaactttcggat 127

                                                                       
Query: 191 gatgaaaggccaccagagtctagaagacttgctggtattatccttaagaattcactggac 250
            ||||||  ||||||||||||||| ||||||||||||||||||||||||| ||  |||| 
Sbjct: 128 aatgaaaaaccaccagagtctagacgacttgctggtattatccttaagaactccttggat 187

                                                                       
Query: 251 gcaaaagattctgcaaggaaggagctgctgattcagcaatgggtcagcttggatcactcg 310
           ||||| ||||||||||  ||||| || ||||||||||||||||||||| ||||||  || 
Sbjct: 188 gcaaaggattctgcaaaaaaggaactactgattcagcaatgggtcagcctggatccatca 247

                                                                       
Query: 311 atcaaatcgcagattaaggagtcattgctgataacactaggatctttcgtgggtgatgcc 370
           ||||||  | |||| |||||||| ||||||||||| ||||||||||  |||  |||||| 
Sbjct: 248 atcaaacagaagataaaggagtccttgctgataacgctaggatcttcggtgcatgatgct 307

                                     
Query: 371 cggcagacgtcatcacaagtcattgc 396
            |||| || |||||||||||||||||
Sbjct: 308 aggcatacctcatcacaagtcattgc 333
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 53       atggatatcactcagattctgctagctgctcagtc 87
                ||||||||||| ||| ||||||||||||| |||||
Sbjct: 10255004 atggatatcacacaggttctgctagctgcgcagtc 10254970



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 213      gaagacttgctggtattatccttaagaattcactggacgcaaaaga 258
                |||| |||||||||||| | |||||||||||  |||| ||||||||
Sbjct: 10254844 gaaggcttgctggtattttgcttaagaattccttggatgcaaaaga 10254799
to top
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 53     atggatatcactcagattctgctagctgctcagtc 87
              ||||||||||| ||| ||||||||||||| |||||
Sbjct: 116417 atggatatcacacaggttctgctagctgcgcagtc 116383



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 213    gaagacttgctggtattatccttaagaattcactggacgcaaaaga 258
              |||| |||||||||||| | |||||||||||  |||| ||||||||
Sbjct: 116257 gaaggcttgctggtattttgcttaagaattccttggatgcaaaaga 116212
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 53       atggatatcactcagattctgctagctgctcagtc 87
                ||||||||||| ||| ||||||||||||| |||||
Sbjct: 10253105 atggatatcacacaggttctgctagctgcgcagtc 10253071



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 213      gaagacttgctggtattatccttaagaattcactggacgcaaaaga 258
                |||| |||||||||||| | |||||||||||  |||| ||||||||
Sbjct: 10252945 gaaggcttgctggtattttgcttaagaattccttggatgcaaaaga 10252900
to top
>gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC T16O11 genomic sequence,
             complete sequence
          Length = 80381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 236   aagaattcactggacgcaaaagattctgc 264
             |||||||| |||||||| |||||||||||
Sbjct: 34823 aagaattctctggacgccaaagattctgc 34851



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 236   aagaattcactggacgcaaaagattctgc 264
             |||||||| |||||||| |||||||||||
Sbjct: 32349 aagaattctctggacgccaaagattctgc 32321
to top
>emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH64ZE06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 236 aagaattcactggacgcaaaagattctgc 264
           |||||||| |||||||| |||||||||||
Sbjct: 352 aagaattctctggacgccaaagattctgc 380
to top
>gb|AF020583.1|AF020583 Zamia furfuracea cytochrome c oxidase (coxI) gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 270 aggagctgctgattcagcaat 290
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
to top
>gb|AF020577.1|AF020577 Stangeria eriopus cytochrome c oxidase (coxI) gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 270 aggagctgctgattcagcaat 290
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
to top
>gb|AF020563.1|AF020563 Encephalartos lebomboensis cytochrome c oxidase (coxI) gene,
           mitochondrial gene encoding mitochondrial protein,
           partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 270 aggagctgctgattcagcaat 290
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
to top
>gb|AF020562.1|AF020562 Cycas revoluta cytochrome c oxidase (coxI) gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 270 aggagctgctgattcagcaat 290
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
to top
>gb|BC061828.1| Rattus norvegicus cDNA clone IMAGE:5599715, partial cds
          Length = 3356

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  gcagaatcttcccaacttcc 161
            ||||||||||||||||||||
Sbjct: 1730 gcagaatcttcccaacttcc 1749
to top
>gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 217393

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 141   agcagaatcttcccaacttcctcctatccttg 172
             |||| ||||||||||| ||| |||||||||||
Sbjct: 18245 agcacaatcttcccaagttcatcctatccttg 18276
to top
>emb|BX070094.1|CNS09Q8Y Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC7AA12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 684

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 gccaacatcaagcagttcca 138
           ||||||||||||||||||||
Sbjct: 432 gccaacatcaagcagttcca 451
to top
>emb|BX066998.1|CNS09NUY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC50CA07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 869

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 gccaacatcaagcagttcca 138
           ||||||||||||||||||||
Sbjct: 447 gccaacatcaagcagttcca 466
to top
>emb|BX063629.1|CNS09L9D Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC45CC12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 552

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 gccaacatcaagcagttcca 138
           ||||||||||||||||||||
Sbjct: 442 gccaacatcaagcagttcca 461
to top
>emb|BX034964.1|CNS08Z54 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA6AD09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 712

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 gccaacatcaagcagttcca 138
           ||||||||||||||||||||
Sbjct: 430 gccaacatcaagcagttcca 449
to top
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
              complete sequence
          Length = 123272

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    aaagattctgcaaggaagga 273
              ||||||||||||||||||||
Sbjct: 103916 aaagattctgcaaggaagga 103897
to top
>gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, complete sequence
          Length = 188534

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   tccttaagaattcactggac 250
             ||||||||||||||||||||
Sbjct: 64567 tccttaagaattcactggac 64586
to top
>gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213287

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 141    agcagaatcttcccaacttcctcctatccttg 172
              |||| ||||||||||| ||| |||||||||||
Sbjct: 188251 agcacaatcttcccaagttcatcctatccttg 188282
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 254      aaagattctgcaaggaagga 273
                ||||||||||||||||||||
Sbjct: 35479113 aaagattctgcaaggaagga 35479094
to top
>gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete sequence
          Length = 68689

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   cagagtctagaagacttgct 223
             ||||||||||||||||||||
Sbjct: 26460 cagagtctagaagacttgct 26479
to top
>dbj|AK105982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G02, full
           insert sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 aaagattctgcaaggaagga 273
           ||||||||||||||||||||
Sbjct: 64  aaagattctgcaaggaagga 45
to top
>emb|AL139353.3|CNS01DXJ Human chromosome 14 DNA sequence BAC R-176H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170919

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   tcgcagattaaggagtcatt 336
             ||||||||||||||||||||
Sbjct: 51487 tcgcagattaaggagtcatt 51506
to top
>emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on chromosome 2, complete
             sequence
          Length = 194065

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tgctagctgctcagtctcca 91
             ||||||||||||||||||||
Sbjct: 50998 tgctagctgctcagtctcca 50979
to top
>emb|AL672148.8| Mouse DNA sequence from clone RP23-369O15 on chromosome X, complete
              sequence
          Length = 130107

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 228    ttatccttaagaattcactggacgcaaa 255
              |||||| ||||||||||||||| |||||
Sbjct: 128123 ttatccataagaattcactggaagcaaa 128096
to top
>emb|AL845172.3| Mouse DNA sequence from clone RP23-285J17 on chromosome 2, complete
              sequence
          Length = 185138

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    agcagaatcttcccaacttcctcc 164
              ||||||| ||||||||||||||||
Sbjct: 133581 agcagaaacttcccaacttcctcc 133604


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,109,407
Number of Sequences: 3902068
Number of extensions: 3109407
Number of successful extensions: 56762
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56690
Number of HSP's gapped (non-prelim): 72
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top