Clone Information

BLAST Search Result

Clone Name	bastl13h03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TECT3_MOUSE (Q8R2Q6) Tectonic-3 precursor	33	0.17
2	DNAK_PHOLL (Q7N8Y4) Chaperone protein dnaK (Heat shock protein 7...	33	0.17
3	GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor	32	0.48
4	PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor	31	0.63
5	SMAD5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SM...	31	0.82
6	GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)	30	1.1
7	UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	30	1.1
8	GRLF1_HUMAN (Q9NRY4) Glucocorticoid receptor DNA-binding factor ...	30	1.1
9	UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	30	1.1
10	GLND_STRCO (O69873) [Protein-PII] uridylyltransferase (EC 2.7.7....	30	1.1
11	BLYA_BACSU (O31982) N-acetylmuramoyl-L-alanine amidase blyA (EC ...	30	1.4
12	PALB_NEUCR (Q7RZP7) Calpain-like protease palB/rim-13 (EC 3.4.22...	30	1.4
13	Y674_TREPA (O83680) Hypothetical protein TP0674	30	1.8
14	SMAD5_MOUSE (P97454) Mothers against decapentaplegic homolog 5 (...	30	1.8
15	SMAD5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (...	30	1.8
16	RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7	30	1.8
17	ZDHC6_MOUSE (Q9CPV7) Probable palmitoyltransferase ZDHHC6 (EC 2....	29	2.4
18	LIPB1_MOUSE (Q8C8U0) Liprin-beta-1 (Protein tyrosine phosphatase...	29	2.4
19	SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-rel...	29	2.4
20	RUVA_CAUCR (Q9A3G7) Holliday junction ATP-dependent DNA helicase...	29	3.1
21	ZDHC6_PONPY (Q5REH2) Probable palmitoyltransferase ZDHHC6 (EC 2....	29	3.1
22	ZDHC6_HUMAN (Q9H6R6) Probable palmitoyltransferase ZDHHC6 (EC 2....	29	3.1
23	UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-intera...	28	4.1
24	AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)	28	4.1
25	GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (...	28	4.1
26	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	28	4.1
27	CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro...	28	4.1
28	IGHA1_HUMAN (P01876) Ig alpha-1 chain C region	28	4.1
29	YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 i...	28	5.3
30	PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1	28	5.3
31	PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)	28	5.3
32	PMP7_CHLPN (Q9Z898) Probable outer membrane protein pmp7 precurs...	28	5.3
33	DVL2_XENLA (P51142) Segment polarity protein dishevelled homolog...	28	5.3
34	NAR1_HUMAN (P52961) GPI-linked NAD(P)(+)--arginine ADP-ribosyltr...	28	5.3
35	HPAB2_PSESM (Q8RSY1) Effector protein hopAB2 (Avirulence protein...	28	5.3
36	NCAP_INBSI (P04666) Nucleoprotein	28	5.3
37	NCAP_INBP9 (O36433) Nucleoprotein	28	5.3
38	NCAP_INBAD (P13885) Nucleoprotein	28	5.3
39	NCAP_INBAC (P13884) Nucleoprotein	28	5.3
40	TY3H_HUMAN (P07101) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyr...	28	6.9
41	VG13_BPMD2 (O64206) Gene 13 protein (Gp13)	28	6.9
42	HUTH_CAUCR (P58082) Histidine ammonia-lyase (EC 4.3.1.3) (Histid...	28	6.9
43	RL5_BOMMO (O76190) 60S ribosomal protein L5	28	6.9
44	PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36	28	6.9
45	PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36	28	6.9
46	MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)	28	6.9
47	CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated n...	28	6.9
48	NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-...	28	6.9
49	YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P...	28	6.9
50	GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein...	28	6.9
51	CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding...	28	6.9
52	NCAP_INBAA (P11102) Nucleoprotein	28	6.9
53	RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding sub...	28	6.9
54	NIFY_AZOBR (P25315) Protein nifY	28	6.9
55	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	27	9.1
56	ZC11A_PONPY (Q5REG6) Zinc finger CCCH-type domain-containing pro...	27	9.1
57	ODP2_ACHLA (P35489) Dihydrolipoyllysine-residue acetyltransferas...	27	9.1
58	Y4OU_RHISN (P55606) UPF0261 protein y4oU	27	9.1
59	MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.1...	27	9.1
60	HT1_ARATH (Q2MHE4) Serine/threonine-protein kinase HT1 (EC 2.7.1...	27	9.1
61	TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding prote...	27	9.1
62	ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3	27	9.1
63	NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)	27	9.1
64	ZC11A_HUMAN (O75152) Zinc finger CCCH-type domain-containing pro...	27	9.1
65	RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1	27	9.1
66	NR5A2_CHICK (O42101) Orphan nuclear receptor NR5A2 (OR2.0) (FTF/...	27	9.1
67	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	27	9.1
68	HTGA_ECOLI (P28697) Very hypothetical heat shock protein htgA (H...	27	9.1

>TECT3_MOUSE (Q8R2Q6) Tectonic-3 precursor|
          Length = 595

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = -1

Query: 384 LLIALSLRDTGLPDPVQNSSPFPAS----PVAPTIPS----PSSSLLRAWTRRSAMDSTR 229
           LL+ L L +T  P P   +  FP S    PV P +P+     SS     WT    +++T 
Sbjct: 10  LLVVLMLSETARPQPSSTARAFPTSWGLEPVTPEVPTSAPPDSSESPTPWTLSMPVNATT 69

Query: 228 QPSAA 214
            P  A
Sbjct: 70  DPFPA 74

to top

>DNAK_PHOLL (Q7N8Y4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 200 AKGQDAADGCRVESMADLLVQARSKLLE---GDGMVGATGDAG 319
           AKG+D AD   +E+    LVQA +KLLE        GAT DAG
Sbjct: 576 AKGEDKAD---IEAKIQALVQASAKLLEIAQQQAQAGATADAG 615

to top

>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor|
          Length = 572

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSSLL 268
           P P  ++SP PAS  +PT+ +PS SL+
Sbjct: 328 PSPSSSTSPSPASSPSPTLSTPSPSLM 354

to top

>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor|
          Length = 551

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 378 IALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDST--RQPSAASWP 205
           +A S    G+P P+  S   P+S   P+ PSPS +L  +    +  + T  R P+++S  
Sbjct: 235 VASSAETQGMPSPMPPSPASPSSSPFPSSPSPSPALQPSGPSAAGTEDTTGRGPTSSSTE 294

Query: 204 L 202
           L
Sbjct: 295 L 295

to top

>SMAD5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SMAD 5)|
           (Mothers against DPP homolog 5) (Smad5)
          Length = 465

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 333 NSSPFPASPVAPTIPSPSSS 274
           NS+PFP SP +P  PSP+SS
Sbjct: 181 NSTPFPLSPNSPYPPSPASS 200

to top

>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)|
          Length = 647

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 351 LPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQP 223
           LP P   S   PA P AP + SP  SLL A   +  +     P
Sbjct: 244 LPGPSDGSGAAPAQPSAPPVASPLPSLLPAQPMQPVIQYVHPP 286

to top

>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 315

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 378 IALSLRDTGLPDPVQNSSPFPASPVA-PTIPSPSSSLLRAWTRRSAM 241
           +A S+R  G+P P   ++ F A     PT+P+P+   L AW RR  +
Sbjct: 169 LAFSVR-RGVPIPPSLANIFAAVRATYPTLPAPAHGCLEAWARRGVL 214

to top

>GRLF1_HUMAN (Q9NRY4) Glucocorticoid receptor DNA-binding factor 1 (Glucocorticoid|
            receptor repression factor 1) (GRF-1) (Rho GAP p190A)
            (p190-A)
          Length = 1513

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 357  TGLPDPVQNSSPFPASPVAPTIPSP 283
            T  P P Q+  P P SP+ P +PSP
Sbjct: 1468 TSQPSPPQSPPPTPQSPMQPLLPSP 1492

to top

>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 378 IALSLRDTGLPDPVQNSSPFPASPVA-PTIPSPSSSLLRAWTRRSAM 241
           +A S+R  G+P P   ++ F A     PT+P+P+   L AW RR  +
Sbjct: 170 LAFSVR-RGVPIPPSLANIFAAVRATYPTLPAPAHGCLEAWARRGVL 215

to top

>GLND_STRCO (O69873) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 835

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 345 DPVQNSSPFPASPVAPTIPSPSSS 274
           +P  +S+P P+SP +P+ PSP SS
Sbjct: 612 EPPADSAPAPSSPSSPSFPSPLSS 635

to top

>BLYA_BACSU (O31982) N-acetylmuramoyl-L-alanine amidase blyA (EC 3.5.1.28)|
           (Cell wall hydrolase) (Autolysin)
          Length = 367

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 315 ASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASW 208
           ASP  PT  SPSSS   + + +S +D  R  S  SW
Sbjct: 185 ASPTKPTTSSPSSSSAVSGSLKSKVDGLRFYSKPSW 220

to top

>PALB_NEUCR (Q7RZP7) Calpain-like protease palB/rim-13 (EC 3.4.22.-) (Cysteine|
           protease rim-13)
          Length = 986

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 333 NSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASWP 205
           ++SP   SP +  +P  + ++  AWTRR+A  ST  PS  + P
Sbjct: 617 SNSPLTISPASDPLPY-NETITGAWTRRTAGGSTVYPSYVTNP 658

to top

>Y674_TREPA (O83680) Hypothetical protein TP0674|
          Length = 202

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 83  GCRRAGPRPATFSASRRGSLPESR 12
           G RRA  R AT  A RRG+LP S+
Sbjct: 35  GARRAAVRSATVRARRRGALPSSQ 58

to top

>SMAD5_MOUSE (P97454) Mothers against decapentaplegic homolog 5 (SMAD 5)|
           (Mothers against DPP homolog 5) (Smad5) (mSmad5)
           (Dwarfin-C) (Dwf-C)
          Length = 465

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 333 NSSPFPASPVAPTIPSPSSS 274
           N++PFP SP +P  PSP+SS
Sbjct: 181 NNAPFPLSPNSPYPPSPASS 200

to top

>SMAD5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (SMAD 5)|
           (Mothers against DPP homolog 5) (Smad5) (hSmad5) (JV5-1)
          Length = 465

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 333 NSSPFPASPVAPTIPSPSSS 274
           N++PFP SP +P  PSP+SS
Sbjct: 181 NNTPFPLSPNSPYPPSPASS 200

to top

>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -1

Query: 351 LPDPVQNSSPFPASPVAPTIPSP------SSSLLRAWTRRSAMDSTRQPSAAS 211
           +P P+QN++P P++   P++ SP      +S+   A    S + ST +PS A+
Sbjct: 363 IPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTAN 415

to top

>ZDHC6_MOUSE (Q9CPV7) Probable palmitoyltransferase ZDHHC6 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 6) (DHHC-6) (H4
           homolog)
          Length = 413

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 355 WSPRPSAEQLTFSCVAGCSDHPITFEQLAPRLDEKV 248
           WS  P  + L +    GC  + +T EQL  + D++V
Sbjct: 278 WSGVPEGDGLEWPIREGCDQYSLTIEQLKQKADKRV 313

to top

>LIPB1_MOUSE (Q8C8U0) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein binding protein 1)
           (PTPRF-interacting protein binding protein 1)
          Length = 969

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 372 LSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTR-RSAMDSTRQPSAASWP 205
           L+L  T      Q +SPFP SP +P     S  ++R + + R +  +T  P   S P
Sbjct: 515 LNLAGTSRSKGSQGTSPFPMSPPSPDSRKKSRGIMRLFGKLRRSQSTTFNPDDMSEP 571

to top

>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPS 280
           P+P   S+P PAS  AP +P PS
Sbjct: 431 PEPDPASAPAPASAPAPVVPQPS 453

to top

>RUVA_CAUCR (Q9A3G7) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 205

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 387 ALLIALSLRDTGLPD-PVQNSSPFPASPVAPTIPSPSSSLLRA 262
           AL I   L+D  + D PV  S+P  ++P AP  P+P+   + A
Sbjct: 122 ALRIVTELKDKPITDGPVLMSAPTSSAPSAPAKPAPTGDAVAA 164

to top

>ZDHC6_PONPY (Q5REH2) Probable palmitoyltransferase ZDHHC6 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 6) (DHHC-6)
          Length = 413

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 355 WSPRPSAEQLTFSCVAGCSDHPITFEQLAPRLDEKV 248
           WS  P  + L +    GC  + +T EQL  + D++V
Sbjct: 278 WSGVPEGDGLEWPVREGCHQYSLTIEQLKQKADKRV 313

to top

>ZDHC6_HUMAN (Q9H6R6) Probable palmitoyltransferase ZDHHC6 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 6) (DHHC-6) (Zinc
           finger protein 376) (Transmembrane protein H4)
          Length = 413

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 355 WSPRPSAEQLTFSCVAGCSDHPITFEQLAPRLDEKV 248
           WS  P  + L +    GC  + +T EQL  + D++V
Sbjct: 278 WSGVPEGDGLEWPVREGCHQYSLTIEQLKQKADKRV 313

to top

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSS 274
           PDP    S  PASP  P  PS S S
Sbjct: 102 PDPASAPSTTPASPATPAQPSTSGS 126

to top

>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)|
          Length = 926

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASWP 205
           P P Q S+P P  P +P +P+P+ +L++        +    P A+S P
Sbjct: 840 PTPTQASTPAPTEPPSP-VPTPTPALVQT-------EGPANPGASSGP 879

to top

>GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (Glial cells|
           missing homolog 1) (GCM motif protein 1) (mGCMa) (mGCM1)
          Length = 436

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   IPAEIPGETPAAMPRRWQVWGRPDG 79
           +P ++P E PAA P    +W  P G
Sbjct: 337 LPQQVPSEPPAAQPGCHPLWSNPGG 361

to top

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 354 GLPDPVQNSSPFPASPVAPTIPSP 283
           G P P  + SP P SP  P+ PSP
Sbjct: 6   GTPPPPPSESPPPPSPPPPSTPSP 29

to top

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 354 GLPDPVQNSSPFPASPVAPTIPSP 283
           G P P  + SP P SP  P+ PSP
Sbjct: 6   GTPPPPPSESPPPPSPPPPSTPSP 29

to top

>IGHA1_HUMAN (P01876) Ig alpha-1 chain C region|
          Length = 353

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 363 RDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAAS 211
           +D  +P PV ++ P P SP  P  PSPS    R    R A++     S A+
Sbjct: 95  QDVTVPCPVPSTPPTP-SPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEAN 144

to top

>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -1

Query: 387 ALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASW 208
           +L ++ S  DT L      SS F  SP  PT+ SPS + L + +  S   ST    ++SW
Sbjct: 177 SLSLSSSYSDTKLFSFDSRSSIF--SPSTPTVISPSYTYLSSISATSFQISTTSELSSSW 234

to top

>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 372 LSLRDTGLPDPVQNSSP----FPASPVAPTIPSPSSS 274
           +S   +GLPD V ++SP     P  P  P IP P ++
Sbjct: 1   MSSEKSGLPDSVPHTSPPPYNAPQPPAEPPIPPPQTA 37

to top

>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)|
          Length = 815

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = -1

Query: 354 GLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASWP 205
           G+P  +Q++ P  +S  + ++PSP++  L   +  ++M ST  P+++  P
Sbjct: 434 GVPTSMQSNGPSVSSVASSSVPSPATPTLTPTSTATSM-STSVPTSSPAP 482

to top

>PMP7_CHLPN (Q9Z898) Probable outer membrane protein pmp7 precursor|
           (Polymorphic membrane protein 7) (Outer membrane protein
           12)
          Length = 936

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
 Frame = +2

Query: 182 SFEDAPAKGQDAADGCRVESMADLLVQARSKLLE--------GDGMVGATGDAGKGELF 334
           SF++A A G   A GC +E+  DL  Q     L+          G V +T  A K  LF
Sbjct: 64  SFQNAGALGIPLASGCFLEAGGDLTFQGNQHALKFAFINAGSSAGTVASTSAADKNLLF 122

to top

>DVL2_XENLA (P51142) Segment polarity protein dishevelled homolog DVL-2|
           (Dishevelled-2) (DSH homolog 2) (Xdsh)
          Length = 736

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 360 DTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPS 220
           D+  P P     P P  PV P IP P +       R S +  +R PS
Sbjct: 87  DSAPPAPATEVRPEPPPPVPPPIPPPPAE------RTSGIGDSRPPS 127

to top

>NAR1_HUMAN (P52961) GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1|
           precursor (EC 2.4.2.31) (Mono(ADP-ribosyl)transferase)
           (CD296 antigen)
          Length = 327

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 196 AGQRPGRC*RLPRRVHGRPSRPGAEQA 276
           +GQRP RC ++ R VHG   RP   +A
Sbjct: 167 SGQRPPRCHQVFRGVHGLRFRPAGPRA 193

to top

>HPAB2_PSESM (Q8RSY1) Effector protein hopAB2 (Avirulence protein avrPtoB)|
           [Includes: E3 ubiquitin-protein ligase (EC 6.3.2.-)]
          Length = 553

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 342 PVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAAS 211
           PV++ +P PASP A +  S   SL   + R  A +  R  + A+
Sbjct: 207 PVRSPTPTPASPAASSSGSSQRSLFGRFARLMAPNQGRSSNTAA 250

to top

>NCAP_INBSI (P04666) Nucleoprotein|
          Length = 560

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 308 GDAGKGELFCT---GSGRPVSLSERAIRR 385
           GD G G++ C+      RP++LS++A+RR
Sbjct: 455 GDGGSGQISCSPVFAVERPIALSKQAVRR 483

to top

>NCAP_INBP9 (O36433) Nucleoprotein|
          Length = 560

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 308 GDAGKGELFCT---GSGRPVSLSERAIRR 385
           GD G G++ C+      RP++LS++A+RR
Sbjct: 455 GDGGSGQISCSPVFAVERPIALSKQAVRR 483

to top

>NCAP_INBAD (P13885) Nucleoprotein|
          Length = 560

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 308 GDAGKGELFCT---GSGRPVSLSERAIRR 385
           GD G G++ C+      RP++LS++A+RR
Sbjct: 455 GDGGSGQISCSPVFAVERPIALSKQAVRR 483

to top

>NCAP_INBAC (P13884) Nucleoprotein|
          Length = 560

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 308 GDAGKGELFCT---GSGRPVSLSERAIRR 385
           GD G G++ C+      RP++LS++A+RR
Sbjct: 455 GDGGSGQISCSPVFAVERPIALSKQAVRR 483

to top

>TY3H_HUMAN (P07101) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine|
           3-hydroxylase) (TH)
          Length = 528

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 375 ALSLRDTGLPDPVQNSSPFP--ASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAA 214
           A+ +R  G P P    SP+P  A+P A   P+P S       +    D+ ++  AA
Sbjct: 28  AIMVRGQGAPGPSLTGSPWPGTAAPAASYTPTPRSPRFIGRRQSLIEDARKEREAA 83

to top

>VG13_BPMD2 (O64206) Gene 13 protein (Gp13)|
          Length = 595

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 313 VAGCSDHPITFEQLAPRLDEKVGHGLYAAAVSSVLAFGRR 194
           V     HP T++ +A R   K       AAV +VLAFG R
Sbjct: 538 VLNAKRHPTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGAR 577

to top

>HUTH_CAUCR (P58082) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 509

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
 Frame = +2

Query: 218 ADGCRVES---MADLLVQARSKLLEGDGMVGATGD-----------AGKGELFCTGSGRP 355
           A G RVE+   + ++LV+  + ++   G VGA+GD            G GE+F  G   P
Sbjct: 111 ASGVRVETVRMLEEMLVEGLTPVVPCQGSVGASGDLAPLSHMAATMIGVGEIFVGGQRLP 170

Query: 356 VS 361
            +
Sbjct: 171 AA 172

to top

>RL5_BOMMO (O76190) 60S ribosomal protein L5|
          Length = 299

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 331 QLTFSCVAGCSDHPI--TFEQLAPRLDEKVGHGLYAAAVSSVLAFGRRVLE 185
           Q+ +S + G  DH +   +    PR   KVG   YAAA S+ L   RR+L+
Sbjct: 63  QVAYSRIEG--DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQ 111

to top

>PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 284 GDGMVGATGDAGKGELFCTGSGRPVSLSERA 376
           G G VG TGD G G+L   G G    L  RA
Sbjct: 192 GAGGVGGTGDNGVGDLGAGGGGGDGGLGGRA 222

to top

>PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 284 GDGMVGATGDAGKGELFCTGSGRPVSLSERA 376
           G G VG TGD G G+L   G G    L  RA
Sbjct: 192 GAGGVGGTGDNGVGDLGAGGGGGDGGLGGRA 222

to top

>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)|
          Length = 1971

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 351  LPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTR 253
            LP P   SS  PA  V P  P+ + SLL+A T+
Sbjct: 1023 LPQPPPASSATPALHVQPLAPAAAPSLLQASTQ 1055

to top

>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase B) (CANP B) [Contains: Calpain B catalytic
           subunit 1; Calpain B catalytic subunit 2]
          Length = 925

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASWP 205
           P P  +++P+P S + P++PS + S L   T   A   T  P     P
Sbjct: 95  PAPYPSATPYPGSGLYPSLPSANVSSLPYPTAPMAPYPTGMPYPTGMP 142

to top

>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (Zinc finger
           C3HC-type protein 1)
          Length = 502

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 336 QNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAAS 211
           Q+++ FP S  A   P P  S  R+W   S +D   +P AAS
Sbjct: 330 QDATFFPGSEQAEKSPGPIVSRTRSWDSSSPVDRP-EPEAAS 370

to top

>YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P11E10.02c|
           precursor
          Length = 1082

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -1

Query: 345 DPVQNSSPFPASPVAPTIPSPSSSLL 268
           D + ++SP  +S ++P++ SP+SS+L
Sbjct: 359 DQLTSASPISSSVISPSVSSPTSSIL 384

to top

>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core|
           protein p15; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASWP 205
           P P  + SP   SPV+PT PS       A T  S + S+  PS+ + P
Sbjct: 153 PPPYNSPSPPVLSPVSPTTPS-------APTPSSLVSSSTPPSSPAPP 193

to top

>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 387 ALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSL 271
           AL I+ S   TG  +P    SP PASP  P  P+P   L
Sbjct: 75  ALWISTSSAGTGGAEPPA-LSPAPASPARPVSPAPGRRL 112

to top

>NCAP_INBAA (P11102) Nucleoprotein|
          Length = 560

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 308 GDAGKGELFCT---GSGRPVSLSERAIRR 385
           GD G G++ C       RP++LS++A+RR
Sbjct: 455 GDGGSGQISCNPVFAVERPIALSKQAVRR 483

to top

>RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 609

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 354 GLPDPVQNSSPFPASPVAPTIPSPSSSLLR 265
           G P P  +  P PA+P   + P+P+ S L+
Sbjct: 113 GNPQPYNDGQPQPAAPAPASAPAPAPSKLQ 142

to top

>NIFY_AZOBR (P25315) Protein nifY|
          Length = 227

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -1

Query: 381 LIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRS 247
           L+  + R T   DP    SP P   + P  P P   L  A T RS
Sbjct: 11  LLCPAFRRTHSHDPADRQSPVPFRRLWPPCPRPRRGLPAATTSRS 55

to top

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -1

Query: 351  LPDPVQNSSPFPASP------VAPTIPSPSSSL 271
            LPDP   ++P PA+P        PT+ S +SSL
Sbjct: 1598 LPDPPSPATPLPAAPPPAVAAAPPTLDSTASSL 1630

to top

>ZC11A_PONPY (Q5REG6) Zinc finger CCCH-type domain-containing protein 11A|
          Length = 811

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = -1

Query: 363 RDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQP 223
           RD+ +  P Q+SS   +SP  P +  PSSS +   TRR +  ST +P
Sbjct: 724 RDSLVLPPTQSSSD--SSP--PEVSGPSSSQMSMKTRRLSSASTGKP 766

to top

>ODP2_ACHLA (P35489) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 544

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSS 274
           P P Q S+P PA   AP + +P++S
Sbjct: 86  PAPAQVSAPTPAPAAAPQVAAPAAS 110

to top

>Y4OU_RHISN (P55606) UPF0261 protein y4oU|
          Length = 402

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 185 FEDAPAKGQDAAD-GCRVESMADLLVQARSKLLEGDGMVGATGDAG 319
           F   P K +D  D G  V +MA  LV+      + DG++GA G  G
Sbjct: 58  FHPNPPKPEDLKDRGKAVAAMAQALVEFIRSRPDVDGIIGAGGTGG 103

to top

>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4)
           (BMK1 kinase)
          Length = 815

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 357 TGLPDPVQNSSPFPASPVAPTIPSPSSS 274
           T  P PVQ +SP P     PT P P S+
Sbjct: 593 TPTPTPVQPTSPPPGPLAQPTGPQPQSA 620

to top

>HT1_ARATH (Q2MHE4) Serine/threonine-protein kinase HT1 (EC 2.7.11.1) (High|
           leaf temperature protein 1)
          Length = 390

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 327 SPFPASPVAPTIP-SPSSSLLRAWTRRSAMDSTRQPSAASWPL 202
           S  P  P  P +P +PSSS    +     M+  R  S  SW +
Sbjct: 17  SKLPLEPSLPNLPCNPSSSKTNRYAEAETMEKKRFDSMESWSM 59

to top

>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)|
           (Fragment)
          Length = 290

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 351 LPDPVQNSSPFPASPVAPTIPSPSSSLLRA 262
           LP P     P P+ P AP  PS    LLRA
Sbjct: 252 LPPPPPAPPPAPSPPPAPATPSRRPLLLRA 281

to top

>ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 78  PSGRPQTCHLLGIAAGVSPGISAGIS 1
           PSG   TC L G   G  PG  AG S
Sbjct: 62  PSGHWATCRLCGEQVGRGPGFHAGTS 87

to top

>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 357 TGLPDPVQNSSPFPASPVAPTIPSPSSS 274
           T +P P + S P P SP     PSPS S
Sbjct: 149 TPIPHPPRRSLPSPPSPSPSPSPSPSPS 176

to top

>ZC11A_HUMAN (O75152) Zinc finger CCCH-type domain-containing protein 11A|
          Length = 810

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = -1

Query: 363 RDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQP 223
           RD+ +  P Q+SS   +SP  P +  PSSS +   TRR +  ST +P
Sbjct: 723 RDSLVLPPTQSSSD--SSP--PEVSGPSSSQMSMKTRRLSSASTGKP 765

to top

>RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1|
          Length = 485

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
 Frame = -1

Query: 390 GALLIALSLRDTGLPDPV--------QNSSPFP---ASPVAPTIPSPSSSLLRAWTRRSA 244
           G L + L L   G PDPV        Q    FP   A   A ++PS  ++   A     A
Sbjct: 355 GGLRLELPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAAAACAPLDSGA 414

Query: 243 MDSTRQPSAAS 211
            +++R+P +AS
Sbjct: 415 SENSRKPPSAS 425

to top

>NR5A2_CHICK (O42101) Orphan nuclear receptor NR5A2 (OR2.0) (FTF/LRH-1)|
          Length = 501

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 372 LSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSL 271
           L L  T LP    + SPF  SP++ T+P P  SL
Sbjct: 183 LPLNHTALPPTDYDRSPFVTSPISMTMP-PHGSL 215

to top

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 360 DTGLPDPVQNSSPFPASPVAPTIPSPS 280
           +T +P    +  P PA P  PT PSPS
Sbjct: 283 NTPMPPSPPSPPPSPAPPTPPTPPSPS 309

to top

>HTGA_ECOLI (P28697) Very hypothetical heat shock protein htgA (Heat shock|
           protein htpY)
          Length = 196

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = -1

Query: 327 SPFPASPVAPTIPSP-----SSSLLRAWTRR 250
           +PF A+P  P  P+P      S+L+ AW R+
Sbjct: 5   TPFSAAPTGPPSPAPRSKPCPSTLIAAWVRK 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,661,473
Number of Sequences: 219361
Number of extensions: 719097
Number of successful extensions: 4294
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4265
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result