>TRUB_SYMTH (Q67P83) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 299

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -1

Query: 254 LLHTKLNPYALSRVQIFDVLAA-------QMAALGSPPRVKCRGCDATAVAIGVA 111
           L+ T+  P+ L++    + LAA         AALG  PRV   G  A  V  GVA
Sbjct: 205 LVRTRSGPFVLAQAATLEELAAGKARLLPPAAALGDMPRVTVSGRAAARVLHGVA 259

>ICAM5_RABIT (Q28730) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 912

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 157 TLGGEPRAAICAASTSKICTLDKAYGFSFVCRSVVDLRSK---KFHSQISKRKCYLTSSP 327
           +  GEP  A  A  T+ +    + +G +F CR+ +DLR +    F +  + R+ +  + P
Sbjct: 165 SFAGEPARARGAVLTATVLARREDHGANFSCRAELDLRPQGLALFENSSAPRQLWTYALP 224

Query: 328 SEFEKIILSVRWLEFRRQRI 387
            +  + +L+ R LE   Q +
Sbjct: 225 LDSPR-LLAPRVLEVDSQSL 243

>PME3_CAEEL (Q867X0) Poly(ADP-ribose) glycohydrolase pme-3 (EC 3.2.1.143) (Poly|
           ADP-ribose metabolism enzyme 3)
          Length = 781

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 121 MATAVASQPRHFTLGGEPR-AAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQIS 297
           +A  VA +P HF   GEP  AA C     ++   D   G  F   +   L  K F   + 
Sbjct: 697 IAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLPHKHFEFYVF 756

Query: 298 KR-KCYLTSS 324
            R   YL+SS
Sbjct: 757 DRISTYLSSS 766

>RPOB_ODOSI (P49466) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1379

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 265 LRSKKFHSQISKRKCYLTSSPSEFEKIILSVRWLEFRRQRIAFQ 396
           L+S K + +ISK    +T+SP + ++I L ++WL+  ++   F+
Sbjct: 200 LKSFKIYQKISK----ITNSPIKVQRIKLFLQWLKLNQKEFNFK 239

>PTAFR_MOUSE (Q62035) Platelet-activating factor receptor (PAF-R)|
          Length = 341

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 151 HFTLGGEPRAAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQISKRKCYLTSSPS 330
           H  +    +  +C  ST+  C LD    + F+ +      S+KF+S  S RKC   +S +
Sbjct: 267 HQAINDAHQITLCLLSTN--CVLDPVI-YCFLTKKFRKHLSEKFYSMRSSRKCSRATSDT 323

Query: 331 EFEKII 348
             E I+
Sbjct: 324 CTEVIV 329

>TILS_BORBU (O51728) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 440

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 374 LNSNHLTLKMIFSNSDGELVK*HFLLEIWEWNFLLLRSTTLLHTKLNPYALSRVQ 210
           L   H  + +IF   +       F+LE+ +W+ L L    L + + N  ++SR++
Sbjct: 312 LEKRHNKINLIFKRDEKFYKPFDFILEVGKWHSLSLGKILLKYLECNAASVSRLK 366

>KAD4_RAT (Q9WUS0) Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3)|
           (Adenylate kinase 3-like 1) (ATP-AMP transphosphorylase)
          Length = 223

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 148 RHFTLGGEPRAAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQISKRKCYLTSSP 327
           +H+ L G PR  + A +  +IC +D     +    ++ D  S+++    S R   L  +P
Sbjct: 83  QHWLLDGFPRTLVQAEALDRICDVDLVISLNIPFETLKDRLSRRWIHPSSGRVYNLDFNP 142

Query: 328 SE 333
            +
Sbjct: 143 PQ 144

>HISX_NITOC (Q3J7H1) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 433

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 124 ATAVASQPRHFTLGGEPRAAICAASTSKICTLDKAYG 234
           A A+A   R FT+GG    A  A  T  +  +DK  G
Sbjct: 178 AAAIAGVDRVFTVGGAQAVAALAFGTESVPRVDKIVG 214

>MR1B2_BRARE (Q90456) Melatonin receptor type 1B Z6.2 (Fragment)|
          Length = 157

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 235 IHMLCPGCKSLMCWLRRWLPSVRLRG*SVAAATPRRSPSGL 113
           +H L P      C+LR W+  +R+R        PR  PS L
Sbjct: 69  VHFLLPIAVVTFCYLRIWVLVLRVRRRVTTDVRPRLRPSEL 109

>IPMK_HUMAN (Q8NFU5) Inositol polyphosphate multikinase (EC 2.7.1.151)|
           (Inositol 1,3,4,6-tetrakisphosphate 5-kinase)
          Length = 416

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 214 TLDKAYGFSFVCRSVVDLRSKKFHSQISKRKCYLTSSPSEFEKIILSVRWLEFRRQ 381
           T ++ YG S    ++ D  S+ FH+    RK  + +S  + EKI+   +W E ++Q
Sbjct: 193 TENQHYGRSLTKETIKDGVSRFFHNGYCLRKDAVAASIQKIEKIL---QWFENQKQ 245

>HISX_THIDA (Q3SI67) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 434

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 124 ATAVASQPRHFTLGGEPRAAICAASTSKICTLDKAYG 234
           A A+A   R FT+GG    A  A  T  +  +DK  G
Sbjct: 178 AAAIAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVG 214

>DMD_CHICK (P11533) Dystrophin|
          Length = 3660

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 5    LSHRSFPPDINPIPLVLACCEARESR 82
            L+HR  PPDI   P  L+C E   +R
Sbjct: 2995 LAHRFAPPDIQLSPYTLSCLEDLNTR 3020


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,880,378
Number of Sequences: 219361
Number of extensions: 974369
Number of successful extensions: 2332
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2332
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)