ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 7e-11
2dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 76 7e-11
3gb|M61143.1|HSBLRAA Bovine herpesvirus type 1 latency-related op... 48 0.017
4ref|XM_524761.1| PREDICTED: Pan troglodytes similar to BarH-like... 46 0.066
5ref|NM_020063.1| Homo sapiens BarH-like 2 (Drosophila) (BARHL2),... 46 0.066
6gb|AY338397.1| Homo sapiens BARH-like 2 protein (BARHL2) mRNA, c... 46 0.066
7gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase... 46 0.066
8gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, comple... 46 0.066
9dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.066
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.26
11gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.26
12emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 44 0.26
13emb|AL691431.20| Mouse DNA sequence from clone RP23-257P7 on chr... 44 0.26
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.26
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
16gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
17dbj|AK119465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
18gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.26
19ref|XM_547270.2| PREDICTED: Canis familiaris similar to polypyri... 42 1.0
20gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.0
21gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.0
22dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.0
23ref|NM_209485.1| Eremothecium gossypii ADR036Cp (ADR036C), mRNA 42 1.0
24ref|NM_183913.1| Oryza sativa (japonica cultivar-group), predic... 40 4.0
25gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
26gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 4.0
27gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.0
28gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 4.0
29gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome... 40 4.0
30ref|XM_850321.1| PREDICTED: Canis familiaris similar to CASK-int... 40 4.0
31gb|AC126272.3| Mus musculus BAC clone RP23-48P22 from chromosome... 40 4.0
32gb|AY237157.1| EGFP expression vector pBE, complete sequence 40 4.0
33gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 4.0
34emb|X00182.1|GGAC01 Gallus gallus cytoplasmic beta-actin gene 40 4.0
35emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.0
36emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 4.0
37emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 4.0
38emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.0
39emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 4.0
40emb|AJ575648.1|STH575648 Streptomyces thioluteus aureothin biosy... 40 4.0
41gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.0
42dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
44gb|AF428265.1| Expression vector pGIpec, partial sequence 40 4.0
45gb|AC005343.1| Homo sapiens 12 BAC RP11-21K20 (Roswell Park Canc... 40 4.0
46dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 4.0
47dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
48dbj|AK119468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
49gb|AF334827.1| Cloning vector pTurbo-Cre, complete sequence 40 4.0
50emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 4.0
51dbj|AP000821.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.0
52gb|AF097830.1|AF097830 Drosophila virilis suppressor of forked p... 40 4.0
53emb|AJ575208.1|GGA575208 Expression vector pCLGFPA 40 4.0
54gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene 40 4.0 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                     
Query: 242     gccgctggcgccgcccaccgccatgcccagggcgccgccgacggccatggtggc 295
               ||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 6009481 gccgctggcgccgccgaccgccatgccgagggcgccgcctaccgccatggtggc 6009428



 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 217     cgccgacgccggccgcggcctcg 239
               |||||||||||||||||||||||
Sbjct: 5580862 cgccgacgccggccgcggcctcg 5580884
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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                   
Query: 242   gccgctggcgccgcccaccgccatgcccagggcgccgccgacggccatggtggc 295
             ||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 13980 gccgctggcgccgccgaccgccatgccgagggcgccgcctaccgccatggtggc 13927



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 165   ccaatggcggacgcgcgcggtggctggtcctgggacctccccggcttccagccgccg 221
             |||||||||||  | |||||  ||||| |||||||| ||||||| ||| ||||||||
Sbjct: 14066 ccaatggcggatacccgcggccgctgggcctgggacgtccccgggttcgagccgccg 14010
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>gb|M61143.1|HSBLRAA Bovine herpesvirus type 1 latency-related open reading frames 1 and
            2, complete cds
          Length = 2611

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 73   cgtccgcccctcgccccgcaccgccccc 100
            ||||||||||||||||||| ||||||||
Sbjct: 2538 cgtccgcccctcgccccgcgccgccccc 2565
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>ref|XM_524761.1| PREDICTED: Pan troglodytes similar to BarH-like 2; BarH
           (Drosophila)-like 2 (LOC469376), mRNA
          Length = 1110

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 213 cagccgccgacgccggccgcggcctcgacgc 243
           ||||||||| |||||||||||||| ||||||
Sbjct: 277 cagccgccgccgccggccgcggccccgacgc 307
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>ref|NM_020063.1| Homo sapiens BarH-like 2 (Drosophila) (BARHL2), mRNA
          Length = 1496

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 213 cagccgccgacgccggccgcggcctcgacgc 243
           ||||||||| |||||||||||||| ||||||
Sbjct: 319 cagccgccgccgccggccgcggccccgacgc 349
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>gb|AY338397.1| Homo sapiens BARH-like 2 protein (BARHL2) mRNA, complete cds
          Length = 1496

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 213 cagccgccgacgccggccgcggcctcgacgc 243
           ||||||||| |||||||||||||| ||||||
Sbjct: 319 cagccgccgccgccggccgcggccccgacgc 349
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>gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase (sorE),
             beta-hydroxybutyryl-CoA dehydrogenase (sorD), putative
             methoxymalonyl-CoA synthase (sorC), reductase (sorR),
             soraphen polyketide synthase A (sorA), soraphen polyketide
             synthase B (sorB), O-methyltransferase (sorM),
             beta-mannanase, and xylanse-arabinofuranosidase
             bifunctional enzyme genes, complete cds; and unknown genes
          Length = 67523

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 215   gccgccgacgccggccgcggcct 237
             |||||||||||||||||||||||
Sbjct: 45334 gccgccgacgccggccgcggcct 45312
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>gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, complete sequence
          Length = 162587

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 213   cagccgccgacgccggccgcggcctcgacgc 243
             ||||||||| |||||||||||||| ||||||
Sbjct: 79153 cagccgccgccgccggccgcggccccgacgc 79123
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>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 217    cgccgacgccggccgcggcctcg 239
              |||||||||||||||||||||||
Sbjct: 127770 cgccgacgccggccgcggcctcg 127792
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 217      cgccgacgccggccgcggcctc 238
                ||||||||||||||||||||||
Sbjct: 11395626 cgccgacgccggccgcggcctc 11395647
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 223    cgccggccgcggcctcgacgcc 244
              ||||||||||||||||||||||
Sbjct: 349072 cgccggccgcggcctcgacgcc 349093
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 266    gcccagggcgccgccgacggcc 287
              ||||||||||||||||||||||
Sbjct: 204001 gcccagggcgccgccgacggcc 203980
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>emb|AL691431.20| Mouse DNA sequence from clone RP23-257P7 on chromosome 4 Contains the
             5' end of a novel gene (2810031P15Rik), a ribosomal
             protein L10 (Rpl10) pseudogene, a ribosomal protein S6
             (Rps6) pseudogene and two CpG islands, complete sequence
          Length = 199847

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 84    cgccccgcaccgcccccgcgggcctc 109
             ||||||||||||||||||| ||||||
Sbjct: 38969 cgccccgcaccgcccccgccggcctc 38944
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 224    gccggccgcggcctcgacgccg 245
              ||||||||||||||||||||||
Sbjct: 565025 gccggccgcggcctcgacgccg 565046



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    cgccggccgcggcctcgacgc 243
              |||||||||||||||||||||
Sbjct: 309145 cgccggccgcggcctcgacgc 309165



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 226     cggccgcggcctcgacgccg 245
               ||||||||||||||||||||
Sbjct: 4263185 cggccgcggcctcgacgccg 4263204
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 217      cgccgacgccggccgcggcctc 238
                ||||||||||||||||||||||
Sbjct: 11392389 cgccgacgccggccgcggcctc 11392410
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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15,
              complete sequence
          Length = 159270

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 217    cgccgacgccggccgcggcctc 238
              ||||||||||||||||||||||
Sbjct: 103923 cgccgacgccggccgcggcctc 103944
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>dbj|AK119465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A02, full
           insert sequence
          Length = 1497

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 217 cgccgacgccggccgcggcctc 238
           ||||||||||||||||||||||
Sbjct: 194 cgccgacgccggccgcggcctc 215
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 227    ggccgcggcctcgacgccgctg 248
              ||||||||||||||||||||||
Sbjct: 683403 ggccgcggcctcgacgccgctg 683382



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 241     cgccgctggcgccgcccaccgcca 264
               |||||||||||||| |||||||||
Sbjct: 2357148 cgccgctggcgccgaccaccgcca 2357125



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     gacgccggccgcggcctcgacgcc 244
               ||||||||||||||||||| ||||
Sbjct: 2123011 gacgccggccgcggcctcgccgcc 2122988



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 223     cgccggccgcggcctcgacg 242
               ||||||||||||||||||||
Sbjct: 1716173 cgccggccgcggcctcgacg 1716192
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>ref|XM_547270.2| PREDICTED: Canis familiaris similar to polypyrimidine tract binding
           protein 2, transcript variant 1 (LOC490149), mRNA
          Length = 3510

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 83  tcgccccgcaccgcccccgcgggcc 107
           |||||| ||||||||||||||||||
Sbjct: 167 tcgcccagcaccgcccccgcgggcc 143
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 248    ggcgccgcccaccgccatgcc 268
              |||||||||||||||||||||
Sbjct: 356329 ggcgccgcccaccgccatgcc 356309
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    ccgacgccggccgcggcctcg 239
              |||||||||||||||||||||
Sbjct: 771457 ccgacgccggccgcggcctcg 771437
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 115     cccgccgggccgcgcccgcgc 135
               |||||||||||||||||||||
Sbjct: 8597028 cccgccgggccgcgcccgcgc 8597008



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 258     accgccatgcccagggcgccgccga 282
               |||||||||||||| ||||||||||
Sbjct: 3347246 accgccatgcccagcgcgccgccga 3347222



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     cgacgccggccgcggcctcg 239
               ||||||||||||||||||||
Sbjct: 4864200 cgacgccggccgcggcctcg 4864219



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     cgccgacgccggccgcggcc 236
               ||||||||||||||||||||
Sbjct: 4396298 cgccgacgccggccgcggcc 4396317
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>ref|NM_209485.1| Eremothecium gossypii ADR036Cp (ADR036C), mRNA
          Length = 1023

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 219 ccgacgccggccgcggcctcg 239
           |||||||||||||||||||||
Sbjct: 661 ccgacgccggccgcggcctcg 681
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>ref|NM_183913.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 228 gccgcggcctcgacgccgctggcgccgcccaccgcc 263
           |||||||||||| |||||| | |||||||| |||||
Sbjct: 59  gccgcggcctcgccgccgccgccgccgccctccgcc 24
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>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
              complete sequence
          Length = 164709

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 200    cctccccggcttccagccgccgacgccg 227
              |||||||| | |||||||||||||||||
Sbjct: 138141 cctccccgccgtccagccgccgacgccg 138114
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    cctcgacgccgctggcgccg 254
              ||||||||||||||||||||
Sbjct: 231707 cctcgacgccgctggcgccg 231688
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   acgccggccgcggcctcgacgccg 245
             |||||||| |||||||||||||||
Sbjct: 63753 acgccggcggcggcctcgacgccg 63776
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ccggccgcggcctcgacgcc 244
              ||||||||||||||||||||
Sbjct: 403573 ccggccgcggcctcgacgcc 403592
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>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence
          Length = 219597

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 183   ggtggctggtcctgggacctcccc 206
             |||||||||| |||||||||||||
Sbjct: 69254 ggtggctggttctgggacctcccc 69231
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>ref|XM_850321.1| PREDICTED: Canis familiaris similar to CASK-interacting protein CIP98
            (LOC612588), mRNA
          Length = 2817

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 284  ggccatggtggcgcgctcct 303
            ||||||||||||||||||||
Sbjct: 1383 ggccatggtggcgcgctcct 1364
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>gb|AC126272.3| Mus musculus BAC clone RP23-48P22 from chromosome 14, complete sequence
          Length = 191606

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     ccgcccctcgccccgcaccgcccc 99
              |||||||||||||||| |||||||
Sbjct: 155156 ccgcccctcgccccgccccgcccc 155179
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>gb|AY237157.1| EGFP expression vector pBE, complete sequence
          Length = 5497

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  ccgcccctcgccccgcaccgcccc 99
           |||||||||||||||| |||||||
Sbjct: 214 ccgcccctcgccccgccccgcccc 191
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    cgccgcccaccgccatgccc 269
              ||||||||||||||||||||
Sbjct: 264652 cgccgcccaccgccatgccc 264633
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>emb|X00182.1|GGAC01 Gallus gallus cytoplasmic beta-actin gene
          Length = 5046

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  ccgcccctcgccccgcaccgcccc 99
           |||||||||||||||| |||||||
Sbjct: 423 ccgcccctcgccccgccccgcccc 400
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    caccgccatgcccagggcgccgcc 280
              |||||||| |||||||||||||||
Sbjct: 129276 caccgccaggcccagggcgccgcc 129299
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   caccgccatgcccagggcgccgcc 280
             |||||||| |||||||||||||||
Sbjct: 52330 caccgccaggcccagggcgccgcc 52353
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 257    caccgccatgcccagggcgccgcc 280
              |||||||| |||||||||||||||
Sbjct: 175353 caccgccaggcccagggcgccgcc 175330
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 222     acgccggccgcggcctcgacgccg 245
               |||||||| |||||||||||||||
Sbjct: 1423510 acgccggcggcggcctcgacgccg 1423533
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccggccgcggcctcgacgcc 244
              ||||||||||||||||||||
Sbjct: 105106 ccggccgcggcctcgacgcc 105087
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>emb|AJ575648.1|STH575648 Streptomyces thioluteus aureothin biosynthesis gene cluster
             (aurABCDEFGHI genes), strain HKI-22
          Length = 29132

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   ccgccgacgccggccgcggc 235
             ||||||||||||||||||||
Sbjct: 26041 ccgccgacgccggccgcggc 26022
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 222     acgccggccgcggcctcgacgccg 245
               |||||||| |||||||||||||||
Sbjct: 1072208 acgccggcggcggcctcgacgccg 1072231
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 200      cctccccggcttccagccgccgacgccg 227
                |||||||| | |||||||||||||||||
Sbjct: 18970763 cctccccgccgtccagccgccgacgccg 18970736
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 228      gccgcggcctcgacgccgctggcgccgcccaccgcc 263
                |||||||||||| |||||| | |||||||| |||||
Sbjct: 13244849 gccgcggcctcgccgccgccgccgccgccctccgcc 13244884
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>gb|AF428265.1| Expression vector pGIpec, partial sequence
          Length = 561

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  ccgcccctcgccccgcaccgcccc 99
           |||||||||||||||| |||||||
Sbjct: 352 ccgcccctcgccccgccccgcccc 329
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>gb|AC005343.1| Homo sapiens 12 BAC RP11-21K20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137213

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   ccagggcgccgccgacggccatgg 291
             ||||||||||||||||||| ||||
Sbjct: 11126 ccagggcgccgccgacggcgatgg 11103
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     cgccgacgccggccgcggcc 236
               ||||||||||||||||||||
Sbjct: 4008916 cgccgacgccggccgcggcc 4008935



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 156    gtcgcggcgccaatggcggacgcgcgcg 183
              ||||||||||  ||||||||||||||||
Sbjct: 134660 gtcgcggcgctgatggcggacgcgcgcg 134633
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>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487E11
          Length = 151303

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 228    gccgcggcctcgacgccgctggcgccgcccaccgcc 263
              |||||||||||| |||||| | |||||||| |||||
Sbjct: 117150 gccgcggcctcgccgccgccgccgccgccctccgcc 117185
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>dbj|AK119468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A05, full
           insert sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 228 gccgcggcctcgacgccgctggcgccgcccaccgcc 263
           |||||||||||| |||||| | |||||||| |||||
Sbjct: 198 gccgcggcctcgccgccgccgccgccgccctccgcc 163
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>gb|AF334827.1| Cloning vector pTurbo-Cre, complete sequence
          Length = 5894

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  ccgcccctcgccccgcaccgcccc 99
           |||||||||||||||| |||||||
Sbjct: 525 ccgcccctcgccccgccccgcccc 502
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    cgccgacgccggccgcggcc 236
              ||||||||||||||||||||
Sbjct: 914144 cgccgacgccggccgcggcc 914125
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>dbj|AP000821.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-673E11, complete
             sequence
          Length = 180821

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    ccgcccctcgccccgcaccgcccc 99
             |||||||||||||||| |||||||
Sbjct: 91380 ccgcccctcgccccgccccgcccc 91403
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>gb|AF097830.1|AF097830 Drosophila virilis suppressor of forked protein (su(f)) gene,
            complete cds
          Length = 5535

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  cgccgctggcgccgcccacc 260
            ||||||||||||||||||||
Sbjct: 4196 cgccgctggcgccgcccacc 4177
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>emb|AJ575208.1|GGA575208 Expression vector pCLGFPA
          Length = 6084

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  ccgcccctcgccccgcaccgcccc 99
           |||||||||||||||| |||||||
Sbjct: 556 ccgcccctcgccccgccccgcccc 533
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>gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene
          Length = 840

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  ccgcccctcgccccgcaccgcccc 99
           ||||||| ||||||||||||||||
Sbjct: 256 ccgccccccgccccgcaccgcccc 233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,089,358
Number of Sequences: 3902068
Number of extensions: 2089358
Number of successful extensions: 58298
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55258
Number of HSP's gapped (non-prelim): 3038
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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