ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
2ref|XM_476380.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-05
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
4dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
5dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
6dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
8dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
9gb|AC007785.1|AC007785 Homo sapiens chromosome 19, BAC 282485 (C... 46 0.081
10gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, com... 44 0.32
11ref|XM_871421.1| PREDICTED: Bos taurus similar to melanoma antig... 42 1.3
12ref|XM_598556.2| PREDICTED: Bos taurus similar to Melanoma-assoc... 42 1.3
13gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
14gb|AE006831.1| Sulfolobus solfataricus P2 section 190 of 272 of ... 42 1.3
15gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome... 42 1.3
16gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, compl... 42 1.3
17emb|AL358949.16| Human DNA sequence from clone RP11-302K6 on chr... 42 1.3
18gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
19emb|AL807759.15| Mouse DNA sequence from clone RP23-373H1 on chr... 42 1.3
20gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 42 1.3
21gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, c... 42 1.3
22dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
24gb|AC083811.22| Homo sapiens 12 BAC RP11-810G6 (Roswell Park Can... 42 1.3
25dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.3
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
27emb|AL772203.14| Mouse DNA sequence from clone RP23-398I1 on chr... 42 1.3
28dbj|AB209679.1| Homo sapiens mRNA for MCF.2 cell line derived tr... 42 1.3
29gb|AC137127.11| Mus musculus chromosome 9, clone RP24-264F17, co... 40 5.0
30gb|AC118588.6| Mus musculus chromosome 15, clone RP24-576D3, com... 40 5.0
31gb|AC102756.8| Mus musculus chromosome 3, clone RP24-167K1, comp... 40 5.0
32gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
33gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
34gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, com... 40 5.0
35ref|XM_361674.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.0
36gb|AC084800.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.0
37gb|AC118476.15| Mus musculus chromosome 9, clone RP23-242K3, com... 40 5.0
38gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, co... 40 5.0
39gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosom... 40 5.0
40gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome ... 40 5.0
41gb|AC124691.4| Mus musculus BAC clone RP24-158O8 from chromosome... 40 5.0
42gb|AC138342.11| Mus musculus chromosome 12, clone RP23-37C23, co... 40 5.0
43gb|AC090001.19| Homo sapiens 12 BAC RP11-536G4 (Roswell Park Can... 40 5.0
44gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, co... 40 5.0
45gb|AC123036.3| Mus musculus BAC clone RP24-512B13 from chromosom... 40 5.0
46gb|AC127591.4| Mus musculus BAC clone RP23-315I14 from chromosom... 40 5.0
47gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, co... 40 5.0
48ref|XM_794808.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 5.0
49gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, comp... 40 5.0
50emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chr... 40 5.0
51emb|AL021748.2|SPBC16A3 S.pombe chromosome II cosmid c16A3 40 5.0
52gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosom... 40 5.0
53gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cance... 40 5.0
54dbj|AK134505.1| Mus musculus 11 days embryo head cDNA, RIKEN ful... 40 5.0
55emb|BX511080.4| Zebrafish DNA sequence from clone DKEY-237N7 in ... 40 5.0
56gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 5.0
57gb|AC147281.4| Pan troglodytes BAC clone RP43-98P12 from chromos... 40 5.0
58gb|AC093726.3| Homo sapiens BAC clone RP11-5C23 from 7, complete... 40 5.0
59ref|NM_001023793.1| Schizosaccharomyces pombe 972h- hypothetical... 40 5.0
60gb|AC044817.5|AC044817 Homo sapiens, clone RP11-197P20, complete... 40 5.0
61gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete se... 40 5.0
62gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, comple... 40 5.0
63gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, com... 40 5.0
64dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
65gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, com... 40 5.0
66gb|AC120425.12| Mus musculus chromosome 14, clone RP24-510K2, co... 40 5.0
67dbj|AP006306.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.0
68dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.0
69gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, comple... 40 5.0
70emb|AL611949.12| Mouse DNA sequence from clone RP23-454F13 on ch... 40 5.0
71gb|AC152975.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
72dbj|AP000070.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 5.0 
>dbj|AK067091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G23, full
           insert sequence
          Length = 3126

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                       
Query: 288 atgcaacctcctggaatagtctagttcctaaatccttcttccattctggcagatatcaag 347
           ||||| ||| ||||||| ||||||||||| |||| ||| ||||  |||||||||||||||
Sbjct: 223 atgcatccttctggaattgtctagttccttaatctttcgtccagcctggcagatatcaag 282

                                   
Query: 348 agatcattcaggtctcgcacctct 371
           || |||  ||  ||||||||||||
Sbjct: 283 aggtcaggcacatctcgcacctct 306
to top
>ref|XM_476380.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3126

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                       
Query: 288 atgcaacctcctggaatagtctagttcctaaatccttcttccattctggcagatatcaag 347
           ||||| ||| |||||||  |||||||||| |||| ||| ||||  |||||||||||||||
Sbjct: 223 atgcatccttctggaattatctagttccttaatctttcgtccagcctggcagatatcaag 282

                                   
Query: 348 agatcattcaggtctcgcacctct 371
           || |||  ||  ||||||||||||
Sbjct: 283 aggtcaggcacatctcgcacctct 306
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                          
Query: 288    atgcaacctcctggaatagtctagttcctaaatccttcttccattctggcagatatcaag 347
              ||||| ||| |||||||  |||||||||| |||| ||| ||||  |||||||||||||||
Sbjct: 344673 atgcatccttctggaattatctagttccttaatctttcgtccagcctggcagatatcaag 344732

                                      
Query: 348    agatcattcaggtctcgcacctct 371
              || |||  ||  ||||||||||||
Sbjct: 344733 aggtcaggcacatctcgcacctct 344756
to top
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1317D11
          Length = 135043

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                         
Query: 288   atgcaacctcctggaatagtctagttcctaaatccttcttccattctggcagatatcaag 347
             ||||| ||| |||||||  |||||||||| |||| ||| ||||  |||||||||||||||
Sbjct: 68911 atgcatccttctggaattatctagttccttaatctttcgtccagcctggcagatatcaag 68970

                                     
Query: 348   agatcattcaggtctcgcacctct 371
             || |||  ||  ||||||||||||
Sbjct: 68971 aggtcaggcacatctcgcacctct 68994
to top
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0617C02
          Length = 135605

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                         
Query: 288   atgcaacctcctggaatagtctagttcctaaatccttcttccattctggcagatatcaag 347
             ||||| ||| |||||||  |||||||||| |||| ||| ||||  |||||||||||||||
Sbjct: 96672 atgcatccttctggaattatctagttccttaatctttcgtccagcctggcagatatcaag 96731

                                     
Query: 348   agatcattcaggtctcgcacctct 371
             || |||  ||  ||||||||||||
Sbjct: 96732 aggtcaggcacatctcgcacctct 96755
to top
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1005_B10
          Length = 142680

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 109   caacccctcttcctcctccctcatctctctctt 141
             |||||| |||||||||||||| |||||||||||
Sbjct: 42297 caacccttcttcctcctcccttatctctctctt 42265
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 109      caacccctcttcctcctccctcatctctctctt 141
                |||||| |||||||||||||| |||||||||||
Sbjct: 18654851 caacccttcttcctcctcccttatctctctctt 18654819



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 116      tcttcctcctccctcatctctctc 139
                ||||||||||||||| ||||||||
Sbjct: 15632042 tcttcctcctccctcttctctctc 15632065
to top
>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0516D04
          Length = 140491

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 109   caacccctcttcctcctccctcatctctctctt 141
             |||||| |||||||||||||| |||||||||||
Sbjct: 78124 caacccttcttcctcctcccttatctctctctt 78092
to top
>gb|AC007785.1|AC007785 Homo sapiens chromosome 19, BAC 282485 (CIT-B-344H19), complete
             sequence
          Length = 166500

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 115   ctcttcctcctccctcatctctctctt 141
             |||||||||||||||| ||||||||||
Sbjct: 39548 ctcttcctcctccctcctctctctctt 39574
to top
>gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, complete sequence
          Length = 248761

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 114   cctcttcctcctccctcatctc 135
             ||||||||||||||||||||||
Sbjct: 53152 cctcttcctcctccctcatctc 53173
to top
>ref|XM_871421.1| PREDICTED: Bos taurus similar to melanoma antigen family A, 10
           (LOC619102), partial mRNA
          Length = 875

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 acccctcttcctcctccctca 131
           |||||||||||||||||||||
Sbjct: 870 acccctcttcctcctccctca 850
to top
>ref|XM_598556.2| PREDICTED: Bos taurus similar to Melanoma-associated antigen 9
            (MAGE-9 antigen) (LOC520317), partial mRNA
          Length = 1467

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 111  acccctcttcctcctccctca 131
            |||||||||||||||||||||
Sbjct: 1462 acccctcttcctcctccctca 1442
to top
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13,
              complete sequence
          Length = 143966

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 116    tcttcctcctccctcatctctctct 140
              ||||||||||||||| |||||||||
Sbjct: 109754 tcttcctcctccctcttctctctct 109778
to top
>gb|AE006831.1| Sulfolobus solfataricus P2 section 190 of 272 of the complete genome
          Length = 14785

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   tcctccctcatctctctcttc 142
             |||||||||||||||||||||
Sbjct: 10355 tcctccctcatctctctcttc 10335
to top
>gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome 17, complete sequence
          Length = 144510

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 106    caacaacccctcttcctcctccctc 130
              |||||||||||||||| ||||||||
Sbjct: 110029 caacaacccctcttccccctccctc 110005
to top
>gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, complete sequence
          Length = 182237

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 106    caacaacccctcttcctcctccctc 130
              |||||||||||||||| ||||||||
Sbjct: 107772 caacaacccctcttccccctccctc 107796
to top
>emb|AL358949.16| Human DNA sequence from clone RP11-302K6 on chromosome 10 Contains part
              of the gene for VPS10 domain receptor protein SORCS 3
              (SORCS3), complete sequence
          Length = 166563

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     aaagaagaggatggaatcaaa 47
              |||||||||||||||||||||
Sbjct: 103337 aaagaagaggatggaatcaaa 103317
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 114     cctcttcctcctccctcatctctct 138
               ||||||| |||||||||||||||||
Sbjct: 2202093 cctcttcttcctccctcatctctct 2202117
to top
>emb|AL807759.15| Mouse DNA sequence from clone RP23-373H1 on chromosome X, complete
             sequence
          Length = 89833

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   acccctcttcctcctccctca 131
             |||||||||||||||||||||
Sbjct: 11960 acccctcttcctcctccctca 11980
to top
>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 330   attctggcagatatcaagagatcat 354
             ||||||||||||||||||| |||||
Sbjct: 57536 attctggcagatatcaagatatcat 57560
to top
>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence
          Length = 156654

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcttcctcctccctcatctctct 138
             ||||||| |||||||||||||||||
Sbjct: 27747 cctcttcttcctccctcatctctct 27771
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 114     cctcttcctcctccctcatctctct 138
               ||||||| |||||||||||||||||
Sbjct: 2202093 cctcttcttcctccctcatctctct 2202117
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 116     tcttcctcctccctcatctctctct 140
               ||||||||||||||| |||||||||
Sbjct: 6408015 tcttcctcctccctcttctctctct 6408039



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                               
Query: 109     caacccctcttcctcctccctcatctctctct 140
               |||||| ||||||||||||||| |||||||||
Sbjct: 7254253 caacccttcttcctcctccctc-tctctctct 7254283



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 114     cctcttcctcctccctcatctctctctt 141
               ||||||||||||||||  ||||||||||
Sbjct: 1087181 cctcttcctcctcccttctctctctctt 1087208
to top
>gb|AC083811.22| Homo sapiens 12 BAC RP11-810G6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173067

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 306    gtctagttcctaaatccttcttcca 330
              |||| ||||||||||||||||||||
Sbjct: 109588 gtctggttcctaaatccttcttcca 109564
to top
>dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-708L7, complete
             sequence
          Length = 176273

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   tcctcctccctcatctctctc 139
             |||||||||||||||||||||
Sbjct: 46920 tcctcctccctcatctctctc 46900
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 114     cctcttcctcctccctcatctctct 138
               ||||||| |||||||||||||||||
Sbjct: 2202044 cctcttcttcctccctcatctctct 2202068
to top
>emb|AL772203.14| Mouse DNA sequence from clone RP23-398I1 on chromosome 4, complete
             sequence
          Length = 157996

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 112   cccctcttcctcctccctcatctctctct 140
             ||||||||||||||||||| | |||||||
Sbjct: 17623 cccctcttcctcctccctcttttctctct 17651



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 112   cccctcttcctcctccctcatctctctct 140
             ||||||||||||||||||| | |||||||
Sbjct: 17585 cccctcttcctcctccctcttttctctct 17613
to top
>dbj|AB209679.1| Homo sapiens mRNA for MCF.2 cell line derived transforming sequence
            variant protein
          Length = 8198

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  tcctcctccctcatctctctc 139
            |||||||||||||||||||||
Sbjct: 4965 tcctcctccctcatctctctc 4945
to top
>gb|AC137127.11| Mus musculus chromosome 9, clone RP24-264F17, complete sequence
          Length = 181842

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   cctccctcatctctctcttc 142
             ||||||||||||||||||||
Sbjct: 14761 cctccctcatctctctcttc 14742
to top
>gb|AC118588.6| Mus musculus chromosome 15, clone RP24-576D3, complete sequence
          Length = 175210

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    taaaaatccagaaaagaagaggat 38
             |||||||||||||||| |||||||
Sbjct: 38966 taaaaatccagaaaagtagaggat 38943
to top
>gb|AC102756.8| Mus musculus chromosome 3, clone RP24-167K1, complete sequence
          Length = 175712

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   ccctcttcctcctccctcatctct 136
             |||||| |||||||||||||||||
Sbjct: 22775 ccctctccctcctccctcatctct 22752
to top
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01,
             complete sequence
          Length = 122768

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 114   cctcttcctcctccctcatctctctctt 141
             ||||||||||||||||  ||||||||||
Sbjct: 42792 cctcttcctcctcccttctctctctctt 42819
to top
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23,
              complete sequence
          Length = 121659

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 109    caacccctcttcctcctccctcatctctctct 140
              |||||| ||||||||||||||| |||||||||
Sbjct: 114267 caacccttcttcctcctccctc-tctctctct 114297
to top
>gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, complete sequence
          Length = 230407

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    cctcttcctcctccctcatc 133
              ||||||||||||||||||||
Sbjct: 182208 cctcttcctcctccctcatc 182189
to top
>ref|XM_361674.1| Magnaporthe grisea 70-15 hypothetical protein (MG04148.4) partial
           mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 113 ccctcttcctcctccctcatctct 136
           ||||||||||||||| ||||||||
Sbjct: 701 ccctcttcctcctccatcatctct 678
to top
>gb|AC084800.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-13A15, complete
             sequence
          Length = 213181

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   caacccctcttcctcctccc 128
             ||||||||||||||||||||
Sbjct: 78820 caacccctcttcctcctccc 78801
to top
>gb|AC118476.15| Mus musculus chromosome 9, clone RP23-242K3, complete sequence
          Length = 197683

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   cctccctcatctctctcttc 142
             ||||||||||||||||||||
Sbjct: 37164 cctccctcatctctctcttc 37183
to top
>gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, complete sequence
          Length = 190301

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   cccctcttcctcctccctca 131
             ||||||||||||||||||||
Sbjct: 59390 cccctcttcctcctccctca 59371
to top
>gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosome 9, complete sequence
          Length = 217511

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    ctcctccctcatctctctct 140
              ||||||||||||||||||||
Sbjct: 140798 ctcctccctcatctctctct 140817
to top
>gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome 18, complete sequence
          Length = 215826

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cccctcttcctcctccctca 131
             ||||||||||||||||||||
Sbjct: 40440 cccctcttcctcctccctca 40459
to top
>gb|AC124691.4| Mus musculus BAC clone RP24-158O8 from chromosome 15, complete sequence
          Length = 176829

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    caacccctcttcctcctccc 128
              ||||||||||||||||||||
Sbjct: 125870 caacccctcttcctcctccc 125851
to top
>gb|AC138342.11| Mus musculus chromosome 12, clone RP23-37C23, complete sequence
          Length = 208939

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   cccctcttcctcctccctcatctc 135
             ||||||||| ||||||||||||||
Sbjct: 96257 cccctcttcttcctccctcatctc 96280
to top
>gb|AC090001.19| Homo sapiens 12 BAC RP11-536G4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 207366

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    ctcctccctcatctctctct 140
              ||||||||||||||||||||
Sbjct: 149844 ctcctccctcatctctctct 149825
to top
>gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, complete sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    acaacccctcttcctcctcc 127
              ||||||||||||||||||||
Sbjct: 102065 acaacccctcttcctcctcc 102084
to top
>gb|AC123036.3| Mus musculus BAC clone RP24-512B13 from chromosome 10, complete
             sequence
          Length = 195692

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 316   taaatccttcttccattctggcagatat 343
             |||||||||||||| ||||| |||||||
Sbjct: 12522 taaatccttcttcctttctgtcagatat 12495
to top
>gb|AC127591.4| Mus musculus BAC clone RP23-315I14 from chromosome 15, complete
             sequence
          Length = 182619

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    taaaaatccagaaaagaagaggat 38
             |||||||||||||||| |||||||
Sbjct: 17985 taaaaatccagaaaagtagaggat 18008
to top
>gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, complete sequence
          Length = 184152

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    cctcttcctcctccctcatc 133
              ||||||||||||||||||||
Sbjct: 144270 cctcttcctcctccctcatc 144251
to top
>ref|XM_794808.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC576443 (LOC576443), mRNA
          Length = 651

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 109 caacccctcttcctcctccctcatctct 136
           |||| |||||||||||||| ||||||||
Sbjct: 141 caactcctcttcctcctccttcatctct 114
to top
>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   ccctcttcctcctccctcatctct 136
             |||||| |||||||||||||||||
Sbjct: 47095 ccctctccctcctccctcatctct 47118
to top
>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the
             Eef1b2 gene for eukaryotic translation elongation factor 1
             beta 2, the Ndufs1 gene for NADH dehydrogenase
             (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for
             G-protein coupled receptor 1, the 5' end of a novel gene,
             two novel genes and two CpG islands, complete sequence
          Length = 138564

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   cttcctcctccctcatctctctct 140
             |||||||||||||| |||||||||
Sbjct: 46084 cttcctcctccctcctctctctct 46061
to top
>emb|AL021748.2|SPBC16A3 S.pombe chromosome II cosmid c16A3
          Length = 41173

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  acataggcagatccaatcca 204
            ||||||||||||||||||||
Sbjct: 7756 acataggcagatccaatcca 7737
to top
>gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosome 9, complete sequence
          Length = 140400

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   acccctcttcctcctccctc 130
             ||||||||||||||||||||
Sbjct: 67531 acccctcttcctcctccctc 67550
to top
>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152883

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 114   cctcttcctcctccctcatctctctctt 141
             |||||||||||||| || ||||||||||
Sbjct: 19646 cctcttcctcctccttcttctctctctt 19619
to top
>dbj|AK134505.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched
            library, clone:6230424E12 product:NADH dehydrogenase
            (ubiquinone) Fe-S protein 1, full insert sequence
          Length = 2635

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  cttcctcctccctcatctctctct 140
            |||||||||||||| |||||||||
Sbjct: 1784 cttcctcctccctcctctctctct 1807
to top
>emb|BX511080.4| Zebrafish DNA sequence from clone DKEY-237N7 in linkage group 3,
             complete sequence
          Length = 115272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttataaaaatccagaaaaga 31
             ||||||||||||||||||||
Sbjct: 16779 ttataaaaatccagaaaaga 16798
to top
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    acccctcttcctcctccctc 130
              ||||||||||||||||||||
Sbjct: 724105 acccctcttcctcctccctc 724124
to top
>gb|AC147281.4| Pan troglodytes BAC clone RP43-98P12 from chromosome 7, complete
             sequence
          Length = 185963

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   caacccctcttcctcctccc 128
             ||||||||||||||||||||
Sbjct: 92697 caacccctcttcctcctccc 92678
to top
>gb|AC093726.3| Homo sapiens BAC clone RP11-5C23 from 7, complete sequence
          Length = 159041

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    taaaaatccagaaaagaaga 34
             ||||||||||||||||||||
Sbjct: 44942 taaaaatccagaaaagaaga 44961
to top
>ref|NM_001023793.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC16A3.17c), partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 acataggcagatccaatcca 204
           ||||||||||||||||||||
Sbjct: 422 acataggcagatccaatcca 403
to top
>gb|AC044817.5|AC044817 Homo sapiens, clone RP11-197P20, complete sequence
          Length = 109398

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   cctccctcatctctctcttc 142
             ||||||||||||||||||||
Sbjct: 80539 cctccctcatctctctcttc 80520
to top
>gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete sequence
          Length = 206755

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    acccctcttcctcctccctc 130
              ||||||||||||||||||||
Sbjct: 187289 acccctcttcctcctccctc 187308
to top
>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence
          Length = 188353

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ataaaaatccagaaaagaag 33
             ||||||||||||||||||||
Sbjct: 40580 ataaaaatccagaaaagaag 40599
to top
>gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, complete sequence
          Length = 206852

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    cctccctcatctctctcttc 142
              ||||||||||||||||||||
Sbjct: 110806 cctccctcatctctctcttc 110825
to top
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416G11
          Length = 138858

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   tcttcctcctccctcatctctctc 139
             ||||||||||||||| ||||||||
Sbjct: 69939 tcttcctcctccctcttctctctc 69962
to top
>gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, complete sequence
          Length = 185368

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   tcctcctccctcatctctct 138
             ||||||||||||||||||||
Sbjct: 98507 tcctcctccctcatctctct 98488
to top
>gb|AC120425.12| Mus musculus chromosome 14, clone RP24-510K2, complete sequence
          Length = 209178

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 113    ccctcttcctcctccctcatctctctct 140
              ||||| |||||||||| |||||||||||
Sbjct: 107702 ccctcctcctcctcccccatctctctct 107729
to top
>dbj|AP006306.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-591J4, complete
             sequence
          Length = 211750

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   cctccctcatctctctcttc 142
             ||||||||||||||||||||
Sbjct: 70057 cctccctcatctctctcttc 70038
to top
>dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53I21, complete
              sequence
          Length = 156583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    cctccctcatctctctcttc 142
              ||||||||||||||||||||
Sbjct: 121989 cctccctcatctctctcttc 121970
to top
>gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, complete sequence
          Length = 233915

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cccctcttcctcctccctca 131
             ||||||||||||||||||||
Sbjct: 11526 cccctcttcctcctccctca 11545
to top
>emb|AL611949.12| Mouse DNA sequence from clone RP23-454F13 on chromosome 4, complete
            sequence
          Length = 186276

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  cctccctcatctctctcttc 142
            ||||||||||||||||||||
Sbjct: 6280 cctccctcatctctctcttc 6299
to top
>gb|AC152975.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNOa0158O07, complete sequence
          Length = 40515

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 109   caacccctcttcctcctccctcatctctctct 140
             |||||| ||||||||||||||| |||||||||
Sbjct: 18585 caacccttcttcctcctccctc-tctctctct 18615
to top
>dbj|AP000070.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 6/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   cctccctcatctctctcttc 142
             ||||||||||||||||||||
Sbjct: 39765 cctccctcatctctctcttc 39784


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,679,703
Number of Sequences: 3902068
Number of extensions: 3679703
Number of successful extensions: 120874
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120347
Number of HSP's gapped (non-prelim): 529
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top