Clone Name | bastl13g02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470718.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2044 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 285 tccgcccgggtttctggtgagatgcccaaagcttttgccatcttagaagatat 337 |||||||||| | | ||||||| |||||||||||||| |||| |||||||||| Sbjct: 202 tccgcccgggctaccggtgagacgcccaaagcttttggcatcctagaagatat 254
>dbj|AK066201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K22, full insert sequence Length = 4060 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 285 tccgcccgggtttctggtgagatgcccaaagcttttgccatcttagaagatat 337 |||||||||| | | ||||||| |||||||||||||| |||| |||||||||| Sbjct: 262 tccgcccgggctaccggtgagacgcccaaagcttttggcatcctagaagatat 314
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 300 ggtgagatgcccaaagcttttgccatcttagaagatat 337 ||||||| |||||||||||||| |||| |||||||||| Sbjct: 14738675 ggtgagacgcccaaagcttttggcatcctagaagatat 14738712 Score = 48.1 bits (24), Expect = 0.022 Identities = 66/80 (82%) Strand = Plus / Plus Query: 304 agatgcccaaagcttttgccatcttagaagatatcgtgcagcatactttgtctgatttgc 363 |||||||||||||||||| |||| || ||||| | | ||| || ||| ||||| |||||| Sbjct: 14754439 agatgcccaaagcttttgacatcctacaagatgttgcgcaacacactctgtctaatttgc 14754498 Query: 364 atagcattcagaagagctta 383 || || |||||||||||| Sbjct: 14754499 atgatatccagaagagctta 14754518
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete sequence Length = 130306 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 300 ggtgagatgcccaaagcttttgccatcttagaagatat 337 ||||||| |||||||||||||| |||| |||||||||| Sbjct: 77587 ggtgagacgcccaaagcttttggcatcctagaagatat 77624 Score = 48.1 bits (24), Expect = 0.022 Identities = 66/80 (82%) Strand = Plus / Plus Query: 304 agatgcccaaagcttttgccatcttagaagatatcgtgcagcatactttgtctgatttgc 363 |||||||||||||||||| |||| || ||||| | | ||| || ||| ||||| |||||| Sbjct: 93351 agatgcccaaagcttttgacatcctacaagatgttgcgcaacacactctgtctaatttgc 93410 Query: 364 atagcattcagaagagctta 383 || || |||||||||||| Sbjct: 93411 atgatatccagaagagctta 93430
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 300 ggtgagatgcccaaagcttttgccatcttagaagatat 337 ||||||| |||||||||||||| |||| |||||||||| Sbjct: 14733209 ggtgagacgcccaaagcttttggcatcctagaagatat 14733246 Score = 48.1 bits (24), Expect = 0.022 Identities = 66/80 (82%) Strand = Plus / Plus Query: 304 agatgcccaaagcttttgccatcttagaagatatcgtgcagcatactttgtctgatttgc 363 |||||||||||||||||| |||| || ||||| | | ||| || ||| ||||| |||||| Sbjct: 14748973 agatgcccaaagcttttgacatcctacaagatgttgcgcaacacactctgtctaatttgc 14749032 Query: 364 atagcattcagaagagctta 383 || || |||||||||||| Sbjct: 14749033 atgatatccagaagagctta 14749052
>ref|XM_470721.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2023 Score = 48.1 bits (24), Expect = 0.022 Identities = 66/80 (82%) Strand = Plus / Plus Query: 304 agatgcccaaagcttttgccatcttagaagatatcgtgcagcatactttgtctgatttgc 363 |||||||||||||||||| |||| || ||||| | | ||| || ||| ||||| |||||| Sbjct: 86 agatgcccaaagcttttgacatcctacaagatgttgcgcaacacactctgtctaatttgc 145 Query: 364 atagcattcagaagagctta 383 || || |||||||||||| Sbjct: 146 atgatatccagaagagctta 165
>ref|XM_481597.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2273 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 179 agccgccgcctccgagctcctccgccgcc 207 |||||||||| |||| ||||||||||||| Sbjct: 278 agccgccgccgccgacctcctccgccgcc 306
>gb|DQ213789.1| Taeniopygia guttata clone 0063P0027B04 mRNA sequence Length = 1362 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 183 gccgcctccgagctcctccgccgcc 207 |||||||||||||||| |||||||| Sbjct: 84 gccgcctccgagctccgccgccgcc 60
>ref|NM_192558.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcct 208 ||||||||||||| |||||||||||||| Sbjct: 22 gccgccgcctccgccctcctccgccgcct 50
>emb|BX067836.1|CNS09OI8 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC51CG04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 962 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 acctcgctgtcgccgccgctc 108 ||||||||||||||||||||| Sbjct: 791 acctcgctgtcgccgccgctc 811
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 179 agccgccgcctccgagctcctccgccgcc 207 |||||||||| |||| ||||||||||||| Sbjct: 14074950 agccgccgccgccgacctcctccgccgcc 14074922 Score = 40.1 bits (20), Expect = 5.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 ||||||||| |||||||||||||||||| Sbjct: 3939981 gccgccgcc-ccgagctcctccgccgcc 3940007
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcct 208 ||||||||||||| |||||||||||||| Sbjct: 22944324 gccgccgcctccgccctcctccgccgcct 22944352
>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415C01 Length = 138701 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcct 208 ||||||||||||| |||||||||||||| Sbjct: 14730 gccgccgcctccgccctcctccgccgcct 14758
>dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048E12 Length = 152543 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 179 agccgccgcctccgagctcctccgccgcc 207 |||||||||| |||| ||||||||||||| Sbjct: 106841 agccgccgccgccgacctcctccgccgcc 106813
>dbj|AK119582.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C04, full insert sequence Length = 2022 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 179 agccgccgcctccgagctcctccgccgcc 207 |||||||||| |||| ||||||||||||| Sbjct: 33 agccgccgccgccgacctcctccgccgcc 61
>ref|XM_320939.2| Anopheles gambiae str. PEST ENSANGP00000017588 (ENSANGG00000015099), partial mRNA Length = 3838 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 acctcgctgtcgccgccgctc 108 ||||||||||||||||||||| Sbjct: 3270 acctcgctgtcgccgccgctc 3250
>dbj|AK072399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080H11, full insert sequence Length = 2147 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcct 208 ||||||||||||| |||||||||||||| Sbjct: 52 gccgccgcctccgccctcctccgccgcct 80
>dbj|AK069839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031A12, full insert sequence Length = 2273 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 179 agccgccgcctccgagctcctccgccgcc 207 |||||||||| |||| ||||||||||||| Sbjct: 277 agccgccgccgccgacctcctccgccgcc 305
>gb|AC006141.2|AC006141 Homo sapiens chromosome 17, clone hRPK.421_E_14, complete sequence Length = 121132 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 cttctctcccactccccatct 267 ||||||||||||||||||||| Sbjct: 87649 cttctctcccactccccatct 87629
>emb|AL807778.10| Mouse DNA sequence from clone RP23-198G1 on chromosome 2, complete sequence Length = 203518 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gggtttctggtgagatgccca 312 ||||||||||||||||||||| Sbjct: 102281 gggtttctggtgagatgccca 102301
>ref|XM_480259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1965 Score = 40.1 bits (20), Expect = 5.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 180 gccgccgcctccgagctcctccgccgcc 207 ||||||||| |||||||||||||||||| Sbjct: 161 gccgccgcc-ccgagctcctccgccgcc 135
>ref|XM_475285.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cgctgtcgccgccgctccgg 111 |||||||||||||||||||| Sbjct: 441 cgctgtcgccgccgctccgg 460
>ref|XM_513885.1| PREDICTED: Pan troglodytes LOC457395 (LOC457395), mRNA Length = 2024 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tcctcctagccgccgcctcc 191 |||||||||||||||||||| Sbjct: 685 tcctcctagccgccgcctcc 666
>gb|AY530876.1| Simian adenovirus 22 strain ATCC VR-591, complete genome Length = 36462 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcgctgtcgccgccgctccg 110 |||||||||||||||||||| Sbjct: 33797 tcgctgtcgccgccgctccg 33816
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04, complete sequence Length = 103458 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cgctgtcgccgccgctccgg 111 |||||||||||||||||||| Sbjct: 99210 cgctgtcgccgccgctccgg 99191
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cgctgtcgccgccgctccgg 111 |||||||||||||||||||| Sbjct: 62697 cgctgtcgccgccgctccgg 62678
>gb|AC134440.3| Mus musculus BAC clone RP24-528L1 from chromosome 18, complete sequence Length = 152907 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ttctctcccactccccatct 267 |||||||||||||||||||| Sbjct: 80336 ttctctcccactccccatct 80355
>emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in linkage group 16, complete sequence Length = 127034 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gccgcctcttggtggtccgc 221 |||||||||||||||||||| Sbjct: 51792 gccgcctcttggtggtccgc 51773
>gb|BC085956.1| Rattus norvegicus zinc finger, AN1-type domain 3, mRNA (cDNA clone MGC:95308 IMAGE:7134959), complete cds Length = 2617 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 84 gccgtcgcctccgagctccgccgccgcc 111
>ref|NM_001012175.1| Rattus norvegicus zinc finger, AN1-type domain 3 (Zfand3), mRNA Length = 2617 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 84 gccgtcgcctccgagctccgccgccgcc 111
>emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in linkage group 8, complete sequence Length = 114516 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 tcagaagagcttactttattggaa 394 ||||||||| |||||||||||||| Sbjct: 57110 tcagaagagtttactttattggaa 57087
>emb|AL353638.15| Human DNA sequence from clone RP11-338L20 on chromosome 9 Contains a ribosomal protein S26 pseudogene 3 and part the 5' UTR of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 161067 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ttgccatcttagaagatatc 338 |||||||||||||||||||| Sbjct: 64621 ttgccatcttagaagatatc 64640
>emb|AL139130.28| Human DNA sequence from clone RP11-139I14 on chromosome 1 Contains the 3' end of the RHBG gene for Rhesus blood group B glycoprotein, a novel gene, the gene for transcriptional activator of the c-fos promoter (CROC4) and two CpG islands, complete sequence Length = 61145 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tcctcctagccgccgcctcc 191 |||||||||||||||||||| Sbjct: 56034 tcctcctagccgccgcctcc 56053
>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence Length = 165311 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 cagcatactttgtctgattt 361 |||||||||||||||||||| Sbjct: 111758 cagcatactttgtctgattt 111777
>dbj|AK148316.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370087H04 product:testis expressed gene 27, full insert sequence Length = 3450 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 115 gccgtcgcctccgagctccgccgccgcc 142
>gb|AC151294.3| Mus musculus BAC clone RP23-137I7 from chromosome 17, complete sequence Length = 206868 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 199697 gccgtcgcctccgagctccgccgccgcc 199724
>dbj|AK082915.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430017I01 product:testis expressed gene 27, full insert sequence Length = 2567 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 148 gccgtcgcctccgagctccgccgccgcc 175
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cgctgtcgccgccgctccgg 111 |||||||||||||||||||| Sbjct: 21083832 cgctgtcgccgccgctccgg 21083813
>emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in linkage group 22, complete sequence Length = 256437 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 tcagaagagcttactttattggaa 394 ||||||||| |||||||||||||| Sbjct: 227940 tcagaagagtttactttattggaa 227963
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0462E11 Length = 166115 Score = 40.1 bits (20), Expect = 5.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 ||||||||| |||||||||||||||||| Sbjct: 27278 gccgccgcc-ccgagctcctccgccgcc 27304
>emb|BX569795.5| Zebrafish DNA sequence from clone CH211-206A19 in linkage group 22, complete sequence Length = 162622 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 tcagaagagcttactttattggaa 394 ||||||||| |||||||||||||| Sbjct: 81113 tcagaagagtttactttattggaa 81090
>gb|BC083124.1| Mus musculus zinc finger, AN1-type domain 3, mRNA (cDNA clone MGC:103362 IMAGE:6334368), complete cds Length = 2664 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 111 gccgtcgcctccgagctccgccgccgcc 138
>gb|BC034396.1| Mus musculus zinc finger, AN1-type domain 3, mRNA (cDNA clone MGC:36268 IMAGE:3707476), complete cds Length = 2560 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 31 gccgtcgcctccgagctccgccgccgcc 58
>ref|NM_148926.2| Mus musculus zinc finger, AN1-type domain 3 (Zfand3), mRNA Length = 2664 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 111 gccgtcgcctccgagctccgccgccgcc 138
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gaactccctcatcgcccgcc 150 |||||||||||||||||||| Sbjct: 6123255 gaactccctcatcgcccgcc 6123274
>gb|AC132481.4| Mus musculus BAC clone RP23-14I14 from 17, complete sequence Length = 225031 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 gccgccgcctccgagctcctccgccgcc 207 |||| |||||||||||||| |||||||| Sbjct: 173043 gccgtcgcctccgagctccgccgccgcc 173016 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,649,003 Number of Sequences: 3902068 Number of extensions: 2649003 Number of successful extensions: 57941 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 57517 Number of HSP's gapped (non-prelim): 428 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)