ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
2gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
4gb|AY022832.1| Oryza sativa microsatellite MRG5157 containing (C... 107 3e-20
5ref|XM_475209.1| Oryza sativa (japonica cultivar-group), predic... 84 4e-13
6ref|XM_475208.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
7gb|CP000249.1| Frankia sp. CcI3, complete genome 48 0.023
8gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa,... 44 0.35
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.35
10gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
12gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 42 1.4
13emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.4
14emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.4
15emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 1.4
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.4
17gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosom... 42 1.4
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.4
19gb|AE005028.1| Halobacterium sp. NRC-1 section 59 of 170 of the ... 42 1.4
20ref|XM_466571.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
21gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.5
22gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 geno... 40 5.5
23gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.5
24gb|AF540910.1| Foot-and-mouth disease virus SAT 2 clone ZIM/7/83... 40 5.5
25emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.5
26emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
27emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 5.5
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
30gb|AY593846.1| Foot-and-mouth disease virus SAT 1 isolate sat1rh... 40 5.5
31gb|AY593845.1| Foot-and-mouth disease virus SAT 1 isolate sat1bo... 40 5.5
32gb|AY593843.1| Foot-and-mouth disease virus SAT 1 isolate sat1-6... 40 5.5
33gb|AY593842.1| Foot-and-mouth disease virus SAT 1 isolate sat1-5... 40 5.5
34gb|AY593840.1| Foot-and-mouth disease virus SAT 1 isolate sat1-3... 40 5.5
35gb|AY593839.1| Foot-and-mouth disease virus SAT 1 isolate sat1-2... 40 5.5
36gb|AY593838.1| Foot-and-mouth disease virus SAT 1 isolate sat1-1... 40 5.5
37gb|AY593755.1| Foot-and-mouth disease virus A isolate a15thailan... 40 5.5
38gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.5
39dbj|AP006457.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
40dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
41emb|AJ294477.1|MSM294477 Mycobacterium smegmatis ppm2 gene and p... 40 5.5
42dbj|AK119725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
43dbj|AK119492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
44dbj|AK104011.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
45dbj|AK071641.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
46gb|AY107905.1| Zea mays PCO122820 mRNA sequence 40 5.5
47emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-5... 40 5.5
48gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phyt... 40 5.5
49gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phyt... 40 5.5
50gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
51emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 40 5.5
52emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494... 40 5.5 
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11,
              complete sequence
          Length = 102567

 Score =  109 bits (55), Expect = 7e-21
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                          
Query: 158    ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
              |||||||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 101280 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 101221

                                                 
Query: 218    agcacgaccgcgccgagttcgacgtcaaggcaata 252
              ||||  ||||| |||||||||||||||||| ||||
Sbjct: 101220 agcagaaccgctccgagttcgacgtcaaggtaata 101186
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>gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1657_H11,
            complete sequence
          Length = 98103

 Score =  109 bits (55), Expect = 7e-21
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                        
Query: 158  ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
            |||||||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 6390 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 6331

                                               
Query: 218  agcacgaccgcgccgagttcgacgtcaaggcaata 252
            ||||  ||||| |||||||||||||||||| ||||
Sbjct: 6330 agcagaaccgctccgagttcgacgtcaaggtaata 6296



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 158   ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
             |||| ||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 26313 ggatactggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 26254

                                   
Query: 218   agcacgaccgcgccgagttcga 239
             ||||  ||||| ||||||||||
Sbjct: 26253 agcagaaccgctccgagttcga 26232



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 277   gatgctggtcatgcagtaaaccagctgtatgatctcctctacatgatgggccgtgatgac 336
             |||||||||||||| || || || || |||||| | || |||||||||||||||||||||
Sbjct: 22135 gatgctggtcatgctgtgaatcatctctatgatatgctatacatgatgggccgtgatgac 22076

                                                
Query: 337   attgcagtgggagtcggaggggagggtggtatatc 371
             ||  |||| || || || || || |||||||||||
Sbjct: 22075 atcccagttggtgttggtggtgatggtggtatatc 22041
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 7e-21
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                            
Query: 158      ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
                |||||||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 19641381 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 19641322

                                                   
Query: 218      agcacgaccgcgccgagttcgacgtcaaggcaata 252
                ||||  ||||| |||||||||||||||||| ||||
Sbjct: 19641321 agcagaaccgctccgagttcgacgtcaaggtaata 19641287



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 158      ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
                |||| ||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 19661304 ggatactggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 19661245

                                      
Query: 218      agcacgaccgcgccgagttcga 239
                ||||  ||||| ||||||||||
Sbjct: 19661244 agcagaaccgctccgagttcga 19661223



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 277      gatgctggtcatgcagtaaaccagctgtatgatctcctctacatgatgggccgtgatgac 336
                |||||||||||||| || || || || |||||| | || |||||||||||||||||||||
Sbjct: 19657126 gatgctggtcatgctgtgaatcatctctatgatatgctatacatgatgggccgtgatgac 19657067

                                                   
Query: 337      attgcagtgggagtcggaggggagggtggtatatc 371
                ||  |||| || || || || || |||||||||||
Sbjct: 19657066 atcccagttggtgttggtggtgatggtggtatatc 19657032
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>gb|AY022832.1| Oryza sativa microsatellite MRG5157 containing (CGC)X10, genomic
           sequence
          Length = 230

 Score =  107 bits (54), Expect = 3e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 158 ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
           |||||||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 90  ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 31

                                         
Query: 218 agcacgaccgcgccgagttcgacgtcaagg 247
           ||||  ||||| ||||||||||||||||||
Sbjct: 30  agcagaaccgctccgagttcgacgtcaagg 1
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>ref|XM_475209.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 198

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 158 ggatcctggtagacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217
           |||| ||||| ||||||||||| |||||||||||| |||||||  | |||||||||||||
Sbjct: 89  ggatactggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 148

                                 
Query: 218 agcacgaccgcgccgagttcga 239
           ||||  ||||| ||||||||||
Sbjct: 149 agcagaaccgctccgagttcga 170
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>ref|XM_475208.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2730

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 277 gatgctggtcatgcagtaaaccagctgtatgatctcctctacatgatgggccgtgatgac 336
           |||||||||||||| || || || || |||||| | || |||||||||||||||||||||
Sbjct: 238 gatgctggtcatgctgtgaatcatctctatgatatgctatacatgatgggccgtgatgac 297

                                              
Query: 337 attgcagtgggagtcggaggggagggtggtatatc 371
           ||  |||| || || || || || |||||||||||
Sbjct: 298 atcccagttggtgttggtggtgatggtggtatatc 332
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 108     ggcggcgcggctcgccgcggcggcgggc 135
               |||||||||| |||||||||||||||||
Sbjct: 2023968 ggcggcgcggttcgccgcggcggcgggc 2023995



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     ggcggcgcggctcgccgcgg 127
               ||||||||||||||||||||
Sbjct: 2861623 ggcggcgcggctcgccgcgg 2861604
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>gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 32896

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 110   cggcgcggctcgccgcggcggc 131
             ||||||||||||||||||||||
Sbjct: 13988 cggcgcggctcgccgcggcggc 14009
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 108      ggcggcgcggctcgccgcggcg 129
                ||||||||||||||||||||||
Sbjct: 12795355 ggcggcgcggctcgccgcggcg 12795334



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 108      ggcggcgcggctcgccgcggcggc 131
                ||||||| ||||||||||||||||
Sbjct: 29654619 ggcggcggggctcgccgcggcggc 29654642
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 108   ggcggcgcggctcgccgcggcg 129
             ||||||||||||||||||||||
Sbjct: 33571 ggcggcgcggctcgccgcggcg 33550
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 108      ggcggcgcggctcgccgcggcg 129
                ||||||||||||||||||||||
Sbjct: 12792118 ggcggcgcggctcgccgcggcg 12792097



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 108      ggcggcgcggctcgccgcggcggc 131
                ||||||| ||||||||||||||||
Sbjct: 29746041 ggcggcggggctcgccgcggcggc 29746064
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 108   ggcggcgcggctcgccgcggcggcg 132
             |||||||| ||||||||||||||||
Sbjct: 65510 ggcggcgcagctcgccgcggcggcg 65534
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   ggcggcgggcaaccggccgcc 146
             |||||||||||||||||||||
Sbjct: 65373 ggcggcgggcaaccggccgcc 65393
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    ggcggcgggcaaccggccgcc 146
              |||||||||||||||||||||
Sbjct: 329266 ggcggcgggcaaccggccgcc 329286
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    ggcggcgggcaaccggccgcc 146
              |||||||||||||||||||||
Sbjct: 152897 ggcggcgggcaaccggccgcc 152877
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 109     gcggcgcggctcgccgcggcg 129
               |||||||||||||||||||||
Sbjct: 2062323 gcggcgcggctcgccgcggcg 2062303
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>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete
             sequence
          Length = 156881

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 342   agtgggagtcggaggggaggg 362
             |||||||||||||||||||||
Sbjct: 53545 agtgggagtcggaggggaggg 53525
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 115     cggctcgccgcggcggcgggc 135
               |||||||||||||||||||||
Sbjct: 5168185 cggctcgccgcggcggcgggc 5168205



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 115     cggctcgccgcggcggcgggc 135
               |||||||||||||||||||||
Sbjct: 3650573 cggctcgccgcggcggcgggc 3650593



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 218     agcacgaccgcgccgagttcg 238
               |||||||||||||||||||||
Sbjct: 3464871 agcacgaccgcgccgagttcg 3464851
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>gb|AE005028.1| Halobacterium sp. NRC-1 section 59 of 170 of the complete genome
          Length = 13408

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 171  cacggacatcgacaccgacga 191
            |||||||||||||||||||||
Sbjct: 5453 cacggacatcgacaccgacga 5473
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>ref|XM_466571.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1619

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 171 cacggacatcgacaccgacgacatcttc 198
           |||||||||||||||||| ||| |||||
Sbjct: 601 cacggacatcgacaccgaggacgtcttc 628
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 109     gcggcgcggctcgccgcggcggcg 132
               ||||||||||||| ||||||||||
Sbjct: 2302575 gcggcgcggctcgtcgcggcggcg 2302598
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>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete
              sequence
          Length = 163712

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    ggcggcgcggctcgccgcggcggc 131
              ||||||| ||||||||||||||||
Sbjct: 116758 ggcggcggggctcgccgcggcggc 116735
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 109     gcggcgcggctcgccgcggcggcg 132
               ||||||||||||| ||||||||||
Sbjct: 1374993 gcggcgcggctcgtcgcggcggcg 1375016
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>gb|AF540910.1| Foot-and-mouth disease virus SAT 2 clone ZIM/7/83, complete genome
          Length = 8173

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4410 acgacatcttcgccatcctc 4429
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 89     cgctgtccttgcttcttctggcggcgcggctc 120
              |||||||||| | || ||||||||||||||||
Sbjct: 312058 cgctgtccttccgtcgtctggcggcgcggctc 312089



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    gcggcgcggctcgccgcggcggcg 132
              ||||||||||||||||| ||||||
Sbjct: 162405 gcggcgcggctcgccgctgcggcg 162428
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 109     gcggcgcggctcgccgcggcggcg 132
               ||||||||||||| ||||||||||
Sbjct: 1246909 gcggcgcggctcgtcgcggcggcg 1246932
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    cggcgcggctcgccgcggcggcgg 133
              ||||||||||| ||||||||||||
Sbjct: 297598 cggcgcggctctccgcggcggcgg 297621
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 182     acaccgacgacatcttcgcc 201
               ||||||||||||||||||||
Sbjct: 3500994 acaccgacgacatcttcgcc 3501013
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 171      cacggacatcgacaccgacgacatcttc 198
                |||||||||||||||||| ||| |||||
Sbjct: 23423093 cacggacatcgacaccgaggacgtcttc 23423120
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>gb|AY593846.1| Foot-and-mouth disease virus SAT 1 isolate sat1rhod iso33, complete
            genome
          Length = 8133

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4372 acgacatcttcgccatcctc 4391
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>gb|AY593845.1| Foot-and-mouth disease virus SAT 1 isolate sat1bot iso47, complete
            genome
          Length = 8175

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4411 acgacatcttcgccatcctc 4430
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>gb|AY593843.1| Foot-and-mouth disease virus SAT 1 isolate sat1-6swa iso16, complete
            genome
          Length = 8180

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4416 acgacatcttcgccatcctc 4435
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>gb|AY593842.1| Foot-and-mouth disease virus SAT 1 isolate sat1-5sa iso13, complete
            genome
          Length = 8176

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4414 acgacatcttcgccatcctc 4433
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>gb|AY593840.1| Foot-and-mouth disease virus SAT 1 isolate sat1-3swa iso14, complete
            genome
          Length = 8179

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4415 acgacatcttcgccatcctc 4434
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>gb|AY593839.1| Foot-and-mouth disease virus SAT 1 isolate sat1-20 iso11, complete
            genome
          Length = 8141

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4372 acgacatcttcgccatcctc 4391
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>gb|AY593838.1| Foot-and-mouth disease virus SAT 1 isolate sat1-1bech iso30, complete
            genome
          Length = 8173

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4413 acgacatcttcgccatcctc 4432
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>gb|AY593755.1| Foot-and-mouth disease virus A isolate a15thailand iso43, complete
            genome
          Length = 8192

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acgacatcttcgccatcctc 207
            ||||||||||||||||||||
Sbjct: 4432 acgacatcttcgccatcctc 4451
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 109     gcggcgcggctcgccgcggcggcg 132
               ||||||| ||||||||||||||||
Sbjct: 3236004 gcggcgccgctcgccgcggcggcg 3236027
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>dbj|AP006457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0038P01
          Length = 148506

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 171    cacggacatcgacaccgacgacatcttc 198
              |||||||||||||||||| ||| |||||
Sbjct: 136168 cacggacatcgacaccgaggacgtcttc 136195
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>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1653_F07, complete sequence
          Length = 110109

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 171   cacggacatcgacaccgacgacatcttc 198
             |||||||||||||||||| ||| |||||
Sbjct: 41768 cacggacatcgacaccgaggacgtcttc 41795
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>emb|AJ294477.1|MSM294477 Mycobacterium smegmatis ppm2 gene and ppm1 gene for putative
           polyprenol phosphate mannosyl transferase 2 and 1
          Length = 2592

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cacgaccgcgccgagttcga 239
           ||||||||||||||||||||
Sbjct: 486 cacgaccgcgccgagttcga 467
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>dbj|AK119725.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-H04, full
           insert sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 acaccgacgacatcttcgcc 201
           ||||||||||||||||||||
Sbjct: 212 acaccgacgacatcttcgcc 193
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>dbj|AK119492.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D06, full
           insert sequence
          Length = 1617

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 171 cacggacatcgacaccgacgacatcttc 198
           |||||||||||||||||| ||| |||||
Sbjct: 599 cacggacatcgacaccgaggacgtcttc 626
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>dbj|AK104011.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B07, full
           insert sequence
          Length = 1039

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 acaccgacgacatcttcgcc 201
           ||||||||||||||||||||
Sbjct: 255 acaccgacgacatcttcgcc 236
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>dbj|AK071641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106A11, full
           insert sequence
          Length = 1081

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 acaccgacgacatcttcgcc 201
           ||||||||||||||||||||
Sbjct: 292 acaccgacgacatcttcgcc 273
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>gb|AY107905.1| Zea mays PCO122820 mRNA sequence
          Length = 653

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 caaccggccgccgccgcctc 154
           ||||||||||||||||||||
Sbjct: 223 caaccggccgccgccgcctc 242
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>emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-507K2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197550

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 140   ggccgccgccgcctcaccggatcc 163
             ||||||||||||||| ||||||||
Sbjct: 92730 ggccgccgccgcctccccggatcc 92753
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>gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phytochrome gene, complete cds
          Length = 10878

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gagcgagagcgtggtgggcg 36
            ||||||||||||||||||||
Sbjct: 7714 gagcgagagcgtggtgggcg 7733
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>gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phytochrome gene, partial cds,
            exons 4 through 10
          Length = 4727

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gagcgagagcgtggtgggcg 36
            ||||||||||||||||||||
Sbjct: 2994 gagcgagagcgtggtgggcg 3013
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 182     acaccgacgacatcttcgcc 201
               ||||||||||||||||||||
Sbjct: 3500939 acaccgacgacatcttcgcc 3500958
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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   acaccgacgacatcttcgcc 201
             ||||||||||||||||||||
Sbjct: 15922 acaccgacgacatcttcgcc 15941
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>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 116371

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   acaccgacgacatcttcgcc 201
             ||||||||||||||||||||
Sbjct: 30920 acaccgacgacatcttcgcc 30901


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,293,197
Number of Sequences: 3902068
Number of extensions: 3293197
Number of successful extensions: 91670
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88382
Number of HSP's gapped (non-prelim): 3288
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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