ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13f07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 178 bits (451), Expect = 3e-45 Identities = 90/90 (100%), Positives = 90/90 (100%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 287 AVDQDNGGRGKVGAEAELEQWVTSLPSLTT 376 AVDQDNGGRGKVGAEAELEQWVTSLPSLTT Sbjct: 61 AVDQDNGGRGKVGAEAELEQWVTSLPSLTT 90
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 152 bits (385), Expect = 1e-37 Identities = 75/90 (83%), Positives = 85/90 (94%), Gaps = 1/90 (1%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG+GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 290 VDQDNGGRGKVGAEAELEQWVT-SLPSLTT 376 VD +NG RGKVGAEA LEQW+T SLPSLTT Sbjct: 61 VDPNNGNRGKVGAEASLEQWLTSSLPSLTT 90
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 137 bits (344), Expect = 8e-33 Identities = 66/89 (74%), Positives = 79/89 (88%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+I LTG NK+ARLKG++VLMRKN LD+NDFGAT+IDGI EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 290 VDQDNGGRGKVGAEAELEQWVTSLPSLTT 376 VD +NG RG+VG EA LEQW+TSLPSLTT Sbjct: 60 VDPNNGNRGRVGTEASLEQWLTSLPSLTT 88
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 93.6 bits (231), Expect = 1e-19 Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 3/91 (3%) Frame = +2 Query: 110 LLGGLIDTLTGANKSA---RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLIS 280 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 281 STAVDQDNGGRGKVGAEAELEQWVTSLPSLT 373 S D +NG +GK+G A LE W+T++ SLT Sbjct: 61 SDVTDSENGSKGKLGKAAHLEDWITTITSLT 91
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 92.0 bits (227), Expect = 3e-19 Identities = 45/88 (51%), Positives = 63/88 (71%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGGL D LTG N + ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 290 VDQDNGGRGKVGAEAELEQWVTSLPSLT 373 DQ+N GRG VG+EA LEQ +T LPS++ Sbjct: 60 ADQNNEGRGIVGSEANLEQGLTDLPSVS 87
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 81.3 bits (199), Expect = 5e-16 Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 6/93 (6%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLG--KGVTC 268 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG+ LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 269 QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPS 367 +L+S+TA D NGGRGK+G A LE+ V ++ S Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMKS 93
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 76.3 bits (186), Expect = 2e-14 Identities = 39/89 (43%), Positives = 60/89 (67%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DGI + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 287 AVDQDNGGRGKVGAEAELEQWVTSLPSLT 373 +V+ D G GK+ A LE W+T + +T Sbjct: 60 SVNYD-GLEGKLSNPAYLESWLTDITPIT 87
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 64.7 bits (156), Expect = 5e-11 Identities = 39/87 (44%), Positives = 53/87 (60%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 L+GGLI G + S ++KGTVV+M+KN LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 290 VDQDNGGRGKVGAEAELEQWVTSLPSL 370 D NG +GK A LE ++ +L L Sbjct: 62 SDPANGLQGKHSNPAYLENFLLTLTPL 88
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 63.9 bits (154), Expect = 9e-11 Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 18/93 (19%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLN--------------DFGATII----DGIGEFLGKGVTCQ 271 NK +++GTVVLMRKNVLD N D G II DG+ FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 272 LISSTAVDQDNGGRGKVGAEAELEQWVTSLPSL 370 LIS+T D G+GKVG + LE + SLP+L Sbjct: 70 LISAT--KSDANGKGKVGKDTFLEGVLASLPTL 100
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 62.0 bits (149), Expect = 3e-10 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 13/88 (14%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFLGKGVTCQLISST 286 N+ ++KGTVVLMRKNVLD+N D + +D + FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 287 AVDQDNGGRGKVGAEAELEQWVTSLPSL 370 D G+GK+G LE ++SLP+L Sbjct: 70 KPDAT--GKGKLGKATFLEGIISSLPTL 95
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 61.2 bits (147), Expect = 6e-10 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 13/100 (13%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFL 250 +LGGL+ ++ ++KGTVVLMRKNVL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 251 GKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSL 370 G+ V+ QLIS+T D + G+GK+G LE +TSLP+L Sbjct: 55 GRPVSLQLISATKADAN--GKGKLGKATFLEGIITSLPTL 92
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 60.8 bits (146), Expect = 8e-10 Identities = 35/71 (49%), Positives = 48/71 (67%) Frame = +2 Query: 158 RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAE 337 ++KGTVVLM KN L++N G+ + D + FLG+ V+ QLIS+T D G+GKVG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTF 63 Query: 338 LEQWVTSLPSL 370 LE TSLP+L Sbjct: 64 LEGINTSLPTL 74
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 58.2 bits (139), Expect = 5e-09 Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 20/94 (21%) Frame = +2 Query: 149 KSARLKGTVVLMRKNVLDLN--------------------DFGATIIDGIGEFLGKGVTC 268 + +LKGTV+LM+KNVLD+N +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 269 QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSL 370 +LIS+T D G+GKV EA LE +TS+P+L Sbjct: 68 RLISATVADA--SGKGKVSKEAFLEGLLTSIPTL 99
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 58.2 bits (139), Expect = 5e-09 Identities = 34/78 (43%), Positives = 46/78 (58%) Frame = +2 Query: 140 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGK 319 G + S ++KGTVV+M KNVLD D ++ I + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71 Query: 320 VGAEAELEQWVTSLPSLT 373 A LE + +L LT Sbjct: 72 HSNPAYLENSLFTLTPLT 89
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 55.8 bits (133), Expect = 2e-08 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 22/97 (22%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLNDF------------------GATIIDGI----GEFLGKG 259 +K ++KGTVVLM KNVLD N G +++ G+ FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 260 VTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSL 370 ++ QLIS+T D G GKVG E LE+ + +LP+L Sbjct: 66 ISMQLISAT--QTDGSGNGKVGKEVYLEKHLPTLPTL 100
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 54.7 bits (130), Expect = 5e-08 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 22/97 (22%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGIGEFLGKG 259 N+ ++KGTVVLM KNV D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 260 VTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSL 370 + QLIS+T D G GKVG + LE+ + SLP+L Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQTFLEKHLPSLPNL 100
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 53.9 bits (128), Expect = 9e-08 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 18/89 (20%) Frame = +2 Query: 158 RLKGTVVLMRKNVLDLNDFG------------------ATIIDGIGEFLGKGVTCQLISS 283 ++KGTVVLMRKNVLD N + +D + FLG+ V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 284 TAVDQDNGGRGKVGAEAELEQWVTSLPSL 370 T + G+GKVG + LE + SLP+L Sbjct: 78 TKPLAN--GKGKVGKDTFLEGIIVSLPTL 104
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 49.7 bits (117), Expect = 2e-06 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 13/87 (14%) Frame = +2 Query: 149 KSARLKGTVVLMRKNVLDLNDF---GATIIDGIGEFLGKGV----------TCQLISSTA 289 K ++KGT+V+M+KNVLD+N G + G+G F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLG-FIGSAVDALTFAATKISIQLISATK 65 Query: 290 VDQDNGGRGKVGAEAELEQWVTSLPSL 370 D GG+GK+G L +T LP+L Sbjct: 66 AD---GGKGKIGKSTNLRGKIT-LPTL 88
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 0.64 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 131 TLTGANKSARLKGTVVLMRKNVLDLNDFGATI 226 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 330 SAPTFPRPPLSWS-TAVELISWQVTPLPRNSPMPSMMVAPKSLRSS 196 +A T P PPLS + ++V ++S PL +NS +PS++ +S R+S Sbjct: 960 AASTMPPPPLSRAPSSVSMVS--PPPLHKNSRVPSLVATSESPRAS 1003
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 246 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGR 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 131 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 172
>HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase, chloroplast precursor (EC| 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) Length = 385 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%) Frame = -3 Query: 348 HCSSSASAPTFPRPPLSWS-----TAVELI--SWQVTPLPRNSPMPSMM----VAPKSLR 202 HC+S SAP++ P S S TA+ L SW+ P P+ + + P++ R Sbjct: 3 HCASIVSAPSYAFPFRSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANR 62 Query: 201 SSTFLR 184 TFLR Sbjct: 63 PETFLR 68
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 183 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>CFLAR_MOUSE (O35732) CASP8 and FADD-like apoptosis regulator precursor| (Cellular FLICE-like inhibitory protein) (c-FLIP) (Caspase-eight-related protein) (Casper) (Caspase-like apoptosis regulatory protein) (CLARP) (MACH-related inducer of toxicity) (MRIT Length = 484 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/63 (26%), Positives = 31/63 (49%) Frame = +2 Query: 182 MRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSL 361 +R+N ++D+ +++ IGE L + L+ T + +D GRGK+ + V L Sbjct: 88 LRRNPHLVSDYRVLLME-IGESLDQNDVSSLVFLTRITRDYTGRGKIAKDKSFLDLVIEL 146 Query: 362 PSL 370 L Sbjct: 147 EKL 149
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%) Frame = +1 Query: 64 LVGAVKARRGGQEQ-DAAGRADRHPHGGEQE-------RPA---QGHGGAHAQERA 198 L+ VK RR QEQ +++G +H HG ++ +PA G GG + E A Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKPAGAEDGTGGDDSPEAA 687
>DOF52_ARATH (Q93ZL5) Dof zinc finger protein DOF5.2 (AtDOF5.2)| Length = 457 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -3 Query: 324 PTFPRPPLSWSTAVELISWQVTP 256 P FP PP +W A +SW + P Sbjct: 286 PCFPGPPPTWPYAWNGVSWTILP 308
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 261 TPLPRNSPMPSMMVAPKSLRSSTFLRMSTTV 169 TP P S PS++ +L S F+RM +T+ Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKSTL 271
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 79 KARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQE 192 + +RGG E++ + H ++E +GHG + +QE Sbjct: 661 RVKRGGSEEEEEQKGTHHHSLEDEEDEEEGHGRSLSQE 698
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 177 G A G EQ AAG P G + E+PA G GG Sbjct: 187 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 223 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 177 G A G EQ AAG P G + E+PA G GG Sbjct: 160 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 196 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 177 G A G EQ AAG P G + E+PA G GG Sbjct: 106 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 142
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 98 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 235 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 596 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 641
>SDHD_BURPS (Q63IF8) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 445 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +1 Query: 40 VKNSVLVPLVGAVKARRGGQEQDAAGR--ADRHP-HGGEQERPAQGHGGAHAQ 189 VK +P+ G++KAR G E A A+RH G + +R A G A A+ Sbjct: 98 VKRDDALPVAGSIKARGGFHEVLALAESIAERHGLAGADTDRRALASGAARAR 150
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -3 Query: 342 SSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMV 220 SSSASAP F +PP + S A TP+ MPS V Sbjct: 1630 SSSASAPQFLQPPAAASIAAP------TPISTPHAMPSPSV 1664
>RL2_XANCP (Q8PC46) 50S ribosomal protein L2| Length = 275 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 79 KARRGGQE--QDAAGRADRHPHGGEQERPAQGH 171 K RRG + + AA A+ HPHGG + + QG+ Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQGN 243
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 98 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 235 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 598 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 643
>SCA4_RICAU (Q9AJ64) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa| antigen) (Protein PS 120) (Fragment) Length = 991 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +2 Query: 89 EEAKNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDF-GATIIDGIGEFLGKGVT 265 ++ + + G+ DT+ +N S + KGT+++ + ++ ++ A +G L KGV Sbjct: 526 DDTSRAVAIDGITDTVIKSNLSTKDKGTMLIAVGDKVNASELSNAEKQQLLGSVLKKGVE 585 Query: 266 CQLIS 280 Q++S Sbjct: 586 TQVLS 590
>CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog| Length = 163 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = +1 Query: 52 VLVPLVGAVKARRGG----QEQDAAGRADRHPHGGEQERPAQGHGG 177 ++ A + RRGG QE R P GEQE P GG Sbjct: 49 IMAEPASAPRKRRGGGDDRQELQGCSREPGEPPPGEQEEPRAAGGG 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,537,490 Number of Sequences: 219361 Number of extensions: 736956 Number of successful extensions: 2283 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2256 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
