ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13f02 |
|---|---|
| Clone Library Name | barley_pub |
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 84.0 bits (206), Expect = 2e-16 Identities = 41/71 (57%), Positives = 53/71 (74%) Frame = +1 Query: 292 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMP 471 +LE+ V R + D + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK YE+M Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114 Query: 472 ESELKKYMADI 504 E K++ ADI Sbjct: 115 PGENKRFAADI 125
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 82.0 bits (201), Expect = 8e-16 Identities = 41/71 (57%), Positives = 52/71 (73%) Frame = +1 Query: 292 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMP 471 +LE+ V R + D + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK YE+M Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114 Query: 472 ESELKKYMADI 504 E K + ADI Sbjct: 115 PGENKCFAADI 125
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 72.8 bits (177), Expect = 5e-13 Identities = 37/70 (52%), Positives = 48/70 (68%) Frame = +1 Query: 295 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMPE 474 LEL V QD P + +L +++ IR++TSSMT+VPKPLKFLRPHY TL Y+S P+ Sbjct: 57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116 Query: 475 SELKKYMADI 504 S K +ADI Sbjct: 117 SPQKTQLADI 126
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 66.6 bits (161), Expect = 4e-11 Identities = 30/62 (48%), Positives = 44/62 (70%) Frame = +1 Query: 319 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMPESELKKYMA 498 Q+ D + + ALE+M+ I+++TSSMT+VPKPLKFLRPHY T+ Y+ P + K +A Sbjct: 48 QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLA 107 Query: 499 DI 504 D+ Sbjct: 108 DV 109
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = +1 Query: 295 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMPE 474 LEL V R ++ D + +L ++++ I+++TSSMT+VPKPLKFLRP Y L + Y+ + Sbjct: 48 LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107 Query: 475 SELKKYMADI 504 LK +AD+ Sbjct: 108 PNLKSSLADV 117
>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1| Length = 983 Score = 53.5 bits (127), Expect = 3e-07 Identities = 27/70 (38%), Positives = 42/70 (60%) Frame = +1 Query: 295 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMPE 474 LE+ V + D + L +++ I+++TSSMT+VPKPLKFLRP Y L Y+ + Sbjct: 49 LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108 Query: 475 SELKKYMADI 504 + K +AD+ Sbjct: 109 KDQKSSLADM 118
>AMIB_ECOLI (P26365) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC| 3.5.1.28) Length = 445 Score = 30.4 bits (67), Expect = 2.8 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = -1 Query: 504 YVSHVLL*LRFWHTFVVGFKGSIVWAEELQRLGDRRHRACS*TNLLPHALEGEPLHAGIH 325 Y+S +L L+F H+ VG+ + +LQR+G+ R P HA + Sbjct: 324 YLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKR--------------RPEHASLG 369 Query: 324 VLRPHDV 304 VLR D+ Sbjct: 370 VLRSPDI 376
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.4 bits (67), Expect = 2.8 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 128 S ++ P ++ +A VPLAP +PP+P+P R A Sbjct: 1123 SDKEAPPPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159
>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2| Length = 640 Score = 29.6 bits (65), Expect = 4.8 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +3 Query: 36 PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 134 PT ++ A +PL P A P P P P+ P SH Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387
>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)| (Phosphorylethanolamine transferase) (CTP:phosphoethanolamine cytidylyltransferase) Length = 404 Score = 29.6 bits (65), Expect = 4.8 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -3 Query: 118 IRFGDGAGGLARVRGASGTEATRRCCVGVY 29 IR G GAGG A ++G G R C G Y Sbjct: 2 IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 128 S R+ +P QRR + P R ASPP P R P+ Sbjct: 592 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 128 S R+ +P QRR + P R ASPP P R P+ Sbjct: 585 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 621
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 5 SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS-AVAEPN 118 +K L+ + P A +R TTR P P++PAS VA P+ Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGPS 164
>DMF1_SCHPO (P78953) Division mal foutue 1 protein| Length = 920 Score = 29.3 bits (64), Expect = 6.3 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = +1 Query: 298 ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMPES 477 ELY+ +++ +P + + +S++QE S TS+PK + YG Y +P Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412 Query: 478 EL 483 L Sbjct: 413 NL 414
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 128 S R+ +P QRR + P R ASPP P R P+ Sbjct: 606 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 642
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 128 S R+ +P QRR + P R ASPP P R P+ Sbjct: 611 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 647
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 5 SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS-AVAEPN 118 +K L+ + P A +R TTR P P++PAS VA P+ Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGPS 164
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 128 S ++ P ++ + VPLAP +PP+P+P R A Sbjct: 1118 SDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +3 Query: 15 RSSRK*TPTQQRRVASVPLAPRTLASPPAPSP 110 RS R + + V V PR +ASPPAPSP Sbjct: 76 RSPRSFLAKKLQLVRRVGAPPRRMASPPAPSP 107
>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4| Length = 376 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +3 Query: 36 PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 131 PTQQ +VP AP +S PAP SPN I P++ Sbjct: 15 PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48
>REST_CHICK (O42184) Restin (Cytoplasmic linker protein 170) (CLIP-170)| Length = 1433 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = +1 Query: 340 QRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAYYESMPESELKKYMADI 504 Q+ L++ ++E++ +T + K ++ + Y L+A YE + K+ ADI Sbjct: 974 QQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADI 1028
>YACF_SHIFL (Q83MF4) UPF0289 protein yacF| Length = 247 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +1 Query: 331 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 429 PGV + +E++ Q++++A S + S P+ +FLR Sbjct: 81 PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 18 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNR 116 S ++ P ++ + VPLAP +PP+P+P R Sbjct: 1123 SDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPAR 1155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.129 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,991,456 Number of Sequences: 219361 Number of extensions: 640609 Number of successful extensions: 2435 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2421 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
