ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13e10 |
|---|---|
| Clone Library Name | barley_pub |
>HEM3_PEA (Q43082) Porphobilinogen deaminase, chloroplast precursor (EC| 2.5.1.61) (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 369 Score = 30.8 bits (68), Expect = 0.83 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = -3 Query: 338 HSWAEVKLHIWTEILCPSKLQQFQPSQARLPDSATHLAGHEEGTAPGTASLRPRHALLGR 159 HS +V ++ E + P L + A + SA LA G+ GTASLR + +L R Sbjct: 140 HSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHR 199
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = -3 Query: 305 TEILCPSKLQQFQPSQARLPDSATHLAGHEEGTAPGTAS------LRPRHALLGRRRSRP 144 T+ S+ QQ QP +AR P +A A + PG++S RPR G+RRS P Sbjct: 876 TQTNARSRGQQHQPQKARSPQAAASPAHLSQEAMPGSSSDDRAIHGRPR-GKSGKRRSEP 934
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = -3 Query: 305 TEILCPSKLQQFQPSQARLPDSATHLAGHEEGTAPGTAS------LRPRHALLGRRRSRP 144 T+ S+ QQ QP +AR P +A A + PG++S RPR G+RRS P Sbjct: 876 TQTNARSRGQQHQPQKARSPQAAASPAHLSQEAMPGSSSDDRAIHGRPR-GKSGKRRSEP 934
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = -3 Query: 305 TEILCPSKLQQFQPSQARLPDSATHLAGHEEGTAPGTAS------LRPRHALLGRRRSRP 144 T+ S+ QQ QP +AR P +A A + PG++S RPR G+RRS P Sbjct: 876 TQTNARSRGQQHQPQKARSPQAAASPAHLSQEAMPGSSSDDRAIHGRPR-GKSGKRRSEP 934
>ORAI1_MOUSE (Q8BWG9) Protein orai-1| Length = 304 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -3 Query: 329 AEVKLHIWTEILCPSKLQQFQPSQARLPDSATHLAGHEE--GTAPGTAS 189 AEV L W + L P K Q QPS + P + +A H + G PG A+ Sbjct: 191 AEVVLLCWVKFL-PLKRQAGQPSPTKPPAESVIVANHSDSSGITPGEAA 238
>IRF8_MOUSE (P23611) Interferon regulatory factor 8 (IRF-8) (Interferon| consensus sequence-binding protein) (ICSBP) Length = 424 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = -3 Query: 284 KLQQFQPSQARLPDSATHLAGHEEGTAPGTASLRPRHALL 165 +LQQF +Q+RLPDS L EE P T LR + L+ Sbjct: 328 ELQQFYATQSRLPDSRVVLCFGEE--FPDTVPLRSKLILV 365
>SPT51_ARATH (Q9STN3) Putative transcription elongation factor SPT5 homolog 1| Length = 1054 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +3 Query: 96 PRRRW---TPASWKPCSVRRPTSPPTQECMARTQ*GSSWSSS 212 PR W P SW +P SPP++ A T GS W+S+ Sbjct: 837 PRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTP-GSGWAST 877
>NCPR_PHAAU (P37116) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) Length = 690 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 179 EDAVRQFLEQFPLHDLLGALQSQGAEPETVE 271 ED ++ F+EQ L +L+ A +GAE E V+ Sbjct: 590 EDELKSFVEQGSLSELIVAFSREGAEKEYVQ 620
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +2 Query: 131 VFRAAADFASYPGVHGEDAVRQFLEQFPLHDLLGALQSQGAEPETVETVAACLDK 295 V + D+A Y GV G ++ L+Q L + G + + +PETVET+ LD+ Sbjct: 11 VSKVFQDYAEYHGV-GASLSKKELKQLLLTEF-GDILRRPNDPETVETILEHLDR 63
>EBNA3_EBV (P12977) Epstein-Barr nuclear antigen 3 (EBV nuclear antigen 3)| (EBNA-3) (EBNA-3A) Length = 812 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +3 Query: 99 RRRWTPASWKPCSVRRPTSPPTQECMAR 182 R RW PA W P R P+ ++ +AR Sbjct: 444 RERWRPAPWTPNPPRSPSQMSVRDRLAR 471
>AROB_STAES (Q8CP68) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 354 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 199 ELPHCVLAMHSWVGGEVGRRTEHGFQL 119 ++P +LA S VGG+VG +EHG L Sbjct: 121 QVPTTILAHDSSVGGKVGINSEHGKNL 147
>AROB_STAEQ (Q5HP78) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 354 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 199 ELPHCVLAMHSWVGGEVGRRTEHGFQL 119 ++P +LA S VGG+VG +EHG L Sbjct: 121 QVPTTILAHDSSVGGKVGINSEHGKNL 147
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 24.6 bits (52), Expect(2) = 6.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +2 Query: 14 SPSPLPKHRNQNPEPAR 64 SPSP P+ R + P P R Sbjct: 523 SPSPSPRKRQKEPSPRR 539 Score = 21.6 bits (44), Expect(2) = 6.6 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = +3 Query: 96 PRRRWTPASWKPCSVRRPTSPP 161 PRRR S P RR SPP Sbjct: 537 PRRRRRSPSPPPARRRRSPSPP 558
>SYA_NATPD (Q3ITT7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 932 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 203 EQFPLHDLLGALQSQGAEPETVETVAA 283 + PL +++ S+G +PETVE +AA Sbjct: 449 DPIPLDEVIELYDSRGIQPETVEEIAA 475
>SYFB_UREPA (Q9PQ33) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 772 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 200 LEQFPLHDLLGALQSQGAEPETVETVAACLDKVF 301 L++ PL++L AL G E ET+ ++ + VF Sbjct: 15 LKKIPLNELCAALMDLGCEVETINSIKPSTNLVF 48
>Y793_TREPA (O83771) Hypothetical protein TP0793| Length = 539 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +2 Query: 137 RAAADFASYPGVHGEDAVRQFLEQFPLHDLLGALQSQGAEP-ETVETVAACLDKVFPSRY 313 R + AS G H E + P+H A + + P ETVE++A + ++ Y Sbjct: 392 RTCSSRASRTGTHAEARHSDIVTSSPVHQEGAATVERSSPPEETVESIAHIVKRITGKDY 451 Query: 314 G 316 G Sbjct: 452 G 452
>TOP1_MYCTU (P0A620) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 934 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 224 LLGALQSQG-AEPETVETVAACL-DKVFPSRYGASLLPSYAAFIEAGLL 364 L+ AL+ G P T ++ + D+ + + G++L+PS+ AF GLL Sbjct: 522 LVKALEELGIGRPSTYSSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLL 570
>TOP1_MYCBO (P0A621) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 934 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 224 LLGALQSQG-AEPETVETVAACL-DKVFPSRYGASLLPSYAAFIEAGLL 364 L+ AL+ G P T ++ + D+ + + G++L+PS+ AF GLL Sbjct: 522 LVKALEELGIGRPSTYSSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLL 570
>TOP1_MYCLE (O69548) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 947 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 224 LLGALQSQG-AEPETVETVAACL-DKVFPSRYGASLLPSYAAFIEAGLL 364 L+ AL+ G P T ++ + D+ + + G++L+PS+ AF GLL Sbjct: 520 LVKALEELGIGRPSTYSSIIKTVQDRGYVQKKGSALVPSWVAFAVTGLL 568
>CHEB_BDEBA (P62635) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 354 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 176 GEDAVRQFLEQFPLHDLLGALQSQGAEPETVETVAACLDKVFP 304 G +A++ FL P D+ G L Q P ++ A LDK+FP Sbjct: 174 GTEALKVFLSGMPA-DIPGTLVVQHMPPGFTKSFAENLDKMFP 215
>SDSB_PSES9 (P52686) SDS degradation transcriptional activation protein| Length = 306 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = -3 Query: 203 PGTASLRPRHALLGRRRSR 147 PG RP H LLGRRR R Sbjct: 167 PGVIFCRPGHPLLGRRRHR 185
>MURE_CLOPE (Q8XJ99) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 484 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/73 (30%), Positives = 29/73 (39%) Frame = +2 Query: 155 ASYPGVHGEDAVRQFLEQFPLHDLLGALQSQGAEPETVETVAACLDKVFPSRYGASLLPS 334 A+Y G DAVR E + LH+L + G E +E S + L Sbjct: 139 ANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEV----------SSHSLELDRV 188 Query: 335 YAAFIEAGLLTNL 373 Y E G+ TNL Sbjct: 189 YGIQFEEGIFTNL 201
>OR4C5_HUMAN (Q8NGB2) Olfactory receptor 4C5 (Olfactory receptor OR11-99)| Length = 326 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 267 LKLLQLAWTKYFRPDMELHFCPAMLHLLKLGCSQT 371 +++L + W + P++ HF + LLKL C+ T Sbjct: 179 IQMLLIVWLPFCGPNVIDHFICDLFPLLKLSCTDT 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,051,470 Number of Sequences: 219361 Number of extensions: 899590 Number of successful extensions: 3192 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3186 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
