ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478167.1| Oryza sativa (japonica cultivar-group), mRNA 268 1e-68
2dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
3gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CB... 260 3e-66
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
5dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
6ref|NM_196150.1| Oryza sativa (japonica cultivar-group) putative... 66 8e-08
7gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar N... 66 8e-08
8gb|AC079935.3| Genomic sequence for Oryza sativa (japonica culti... 66 8e-08
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
10dbj|AK105116.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
11dbj|AK101479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 66 8e-08
13gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, co... 48 0.019
14ref|XM_472596.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
15ref|XM_959467.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.2
16ref|XM_330589.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.2
17ref|XM_388606.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 42 1.2
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.2
20dbj|AK067975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
21emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
22gb|BC107772.1| Homo sapiens cDNA clone MGC:104216 IMAGE:6451988,... 40 4.7
23gb|BC052105.1| Danio rerio zgc:56402, mRNA (cDNA clone MGC:56402... 40 4.7
24gb|BC068996.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 4.7
25gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosom... 40 4.7
26gb|BC035748.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 4.7
27gb|BC050594.2| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 4.7
28gb|BC058511.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 4.7
29gb|BC026028.1| Homo sapiens nuclear receptor co-repressor 1, mRN... 40 4.7
30emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on ch... 40 4.7
31emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chr... 40 4.7
32gb|AC105288.3| Homo sapiens BAC clone RP11-554F9 from 4, complet... 40 4.7
33ref|XM_943989.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 4.7
34gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, co... 40 4.7
35dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
36dbj|AB219939.1| Lycopersicon esculentum LeHSP110/ClpB mRNA for h... 40 4.7
37ref|NM_200324.1| Danio rerio zgc:56402 (zgc:56402), mRNA 40 4.7
38gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosom... 40 4.7
39dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
40emb|BX666064.10| Zebrafish DNA sequence from clone DKEY-6N3 in l... 40 4.7
41gb|AC005971.5|AC005971 Homo sapiens chromosome 17, clone hRPK.65... 40 4.7
42ref|NM_006311.2| Homo sapiens nuclear receptor co-repressor 1 (N... 40 4.7
43gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 4.7
44gb|AF044209.1|AF044209 Homo sapiens nuclear receptor co-represso... 40 4.7
45emb|AJ009616.3|HSAJ9616 Homo sapiens chromosome 17 sequence from... 40 4.7 
>ref|XM_478167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3174

 Score =  268 bits (135), Expect = 1e-68
 Identities = 249/287 (86%)
 Strand = Plus / Plus

                                                                       
Query: 71  gggacccgctcctacgctccgagatccacggcttcatcacctacgcagacttgaacttcg 130
           ||||||||||| |  |||||||||||||||| ||| |||| ||| ||||||||||||  |
Sbjct: 70  gggacccgctcgtcggctccgagatccacggtttcctcacttacccagacttgaactatg 129

                                                                       
Query: 131 agaagctgaaagcagaggccgcgtcgcgctggttccggccgaatgagatctacgcggtcc 190
           ||||||||   || ||||| ||| |||| ||||||||||| ||||||||||||||| |  
Sbjct: 130 agaagctggtggcggaggcggcggcgcggtggttccggcctaatgagatctacgcgatat 189

                                                                       
Query: 191 tggcgaaccacgagaggttcaaggtccatgcacagcccattgacaagcccgtgagtggta 250
           |||||||||||| |||||||||| |||| ||||| ||  | ||||||||||||||||| |
Sbjct: 190 tggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaagcccgtgagtggaa 249

                                                                       
Query: 251 ctattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccataattgga 310
           || |||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 250 ctgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccataattgga 309

                                                          
Query: 311 agaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaatta 357
           | ||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct: 310 aaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaatta 356
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>dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E17, full
           insert sequence
          Length = 3174

 Score =  268 bits (135), Expect = 1e-68
 Identities = 249/287 (86%)
 Strand = Plus / Plus

                                                                       
Query: 71  gggacccgctcctacgctccgagatccacggcttcatcacctacgcagacttgaacttcg 130
           ||||||||||| |  |||||||||||||||| ||| |||| ||| ||||||||||||  |
Sbjct: 70  gggacccgctcgtcggctccgagatccacggtttcctcacttacccagacttgaactatg 129

                                                                       
Query: 131 agaagctgaaagcagaggccgcgtcgcgctggttccggccgaatgagatctacgcggtcc 190
           ||||||||   || ||||| ||| |||| ||||||||||| ||||||||||||||| |  
Sbjct: 130 agaagctggtggcggaggcggcggcgcggtggttccggcctaatgagatctacgcgatat 189

                                                                       
Query: 191 tggcgaaccacgagaggttcaaggtccatgcacagcccattgacaagcccgtgagtggta 250
           |||||||||||| |||||||||| |||| ||||| ||  | ||||||||||||||||| |
Sbjct: 190 tggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaagcccgtgagtggaa 249

                                                                       
Query: 251 ctattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccataattgga 310
           || |||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 250 ctgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccataattgga 309

                                                          
Query: 311 agaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaatta 357
           | ||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct: 310 aaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaatta 356
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>gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CBT) mRNA, complete
           cds
          Length = 3134

 Score =  260 bits (131), Expect = 3e-66
 Identities = 248/287 (86%)
 Strand = Plus / Plus

                                                                       
Query: 71  gggacccgctcctacgctccgagatccacggcttcatcacctacgcagacttgaacttcg 130
           ||||||||||| |  |||||||||||||||| ||| |||| ||| ||||||||||||  |
Sbjct: 46  gggacccgctcgtcggctccgagatccacggtttcctcacttacccagacttgaactatg 105

                                                                       
Query: 131 agaagctgaaagcagaggccgcgtcgcgctggttccggccgaatgagatctacgcggtcc 190
           | ||||||   || ||||| ||| |||| ||||||||||| ||||||||||||||| |  
Sbjct: 106 ataagctggtggcggaggcggcggcgcggtggttccggcctaatgagatctacgcgatat 165

                                                                       
Query: 191 tggcgaaccacgagaggttcaaggtccatgcacagcccattgacaagcccgtgagtggta 250
           |||||||||||| |||||||||| |||| ||||| ||  | ||||||||||||||||| |
Sbjct: 166 tggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaagcccgtgagtggaa 225

                                                                       
Query: 251 ctattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccataattgga 310
           || |||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 226 ctgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccataattgga 285

                                                          
Query: 311 agaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaatta 357
           | ||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct: 286 aaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaatta 332
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  137 bits (69), Expect = 3e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                            
Query: 245      gtggtactattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccata 304
                |||| ||| |||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct: 18158591 gtggaactgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccata 18158532

                                                                     
Query: 305      attggaagaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaatta 357
                ||||||| ||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct: 18158531 attggaaaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaatta 18158479



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                            
Query: 117      agacttgaacttcgagaagctgaaagcagaggccgcgtcgcgctggttccggccgaatga 176
                |||||||||||  |||||||||   || ||||| ||| |||| ||||||||||| |||||
Sbjct: 18163779 agacttgaactatgagaagctggtggcggaggcggcggcgcggtggttccggcctaatga 18163720

                                                                            
Query: 177      gatctacgcggtcctggcgaaccacgagaggttcaaggtccatgcacagcccattgacaa 236
                |||||||||| |  |||||||||||| |||||||||| |||| ||||| ||  | |||||
Sbjct: 18163719 gatctacgcgatattggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaa 18163660

                          
Query: 237      gcccgtgagt 246
                ||||||||||
Sbjct: 18163659 gcccgtgagt 18163650



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 71       gggacccgctcctacgctccgagatccacggcttcatcac 110
                ||||||||||| |  |||||||||||||||| ||| ||||
Sbjct: 18164461 gggacccgctcgtcggctccgagatccacggtttcctcac 18164422
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>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0477A12
          Length = 138141

 Score =  137 bits (69), Expect = 3e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                         
Query: 245   gtggtactattgttctatatgatcgtaaagttgtccggaactttcggaaggatggccata 304
             |||| ||| |||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct: 93897 gtggaactgttgttctatatgatcgtaaagtagtcaggaacttccgtaaggatggccata 93838

                                                                  
Query: 305   attggaagaaaaagaaggatggcaaaactgtccaagaagcgcatgaaaaatta 357
             ||||||| ||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct: 93837 attggaaaaaaaagaaggatggcaggacggtccaagaagctcatgaaaaatta 93785



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                         
Query: 117   agacttgaacttcgagaagctgaaagcagaggccgcgtcgcgctggttccggccgaatga 176
             |||||||||||  |||||||||   || ||||| ||| |||| ||||||||||| |||||
Sbjct: 99085 agacttgaactatgagaagctggtggcggaggcggcggcgcggtggttccggcctaatga 99026

                                                                         
Query: 177   gatctacgcggtcctggcgaaccacgagaggttcaaggtccatgcacagcccattgacaa 236
             |||||||||| |  |||||||||||| |||||||||| |||| ||||| ||  | |||||
Sbjct: 99025 gatctacgcgatattggcgaaccacgcgaggttcaagatccacgcacaaccggtcgacaa 98966

                       
Query: 237   gcccgtgagt 246
             ||||||||||
Sbjct: 98965 gcccgtgagt 98956



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 71    gggacccgctcctacgctccgagatccacggcttcatcac 110
             ||||||||||| |  |||||||||||||||| ||| ||||
Sbjct: 99767 gggacccgctcgtcggctccgagatccacggtttcctcac 99728
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>ref|NM_196150.1| Oryza sativa (japonica cultivar-group) putative calmodulin binding
           protein similar to ER66 (OSJNBa0091J06.19), mRNA
          Length = 3117

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 284 actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
           ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 209 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 268

                    
Query: 344 cgcatgaaa 352
           | |||||||
Sbjct: 269 cacatgaaa 277
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>gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
              OSJNBa0091J06 from chromosome 10, complete sequence
          Length = 141911

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                          
Query: 284    actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
              ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 115048 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 115107

                       
Query: 344    cgcatgaaa 352
              | |||||||
Sbjct: 115108 cacatgaaa 115116
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>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare clone OSJNBa0095C06, from Chromosome 10,
            complete sequence
          Length = 156159

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 284  actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
            ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 5970 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 6029

                     
Query: 344  cgcatgaaa 352
            | |||||||
Sbjct: 6030 cacatgaaa 6038
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 284      actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
                ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 11421977 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 11422036

                         
Query: 344      cgcatgaaa 352
                | |||||||
Sbjct: 11422037 cacatgaaa 11422045
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>dbj|AK105116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H10, full
           insert sequence
          Length = 3510

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 284 actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
           ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 393 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 452

                    
Query: 344 cgcatgaaa 352
           | |||||||
Sbjct: 453 cacatgaaa 461
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>dbj|AK101479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041A20, full
           insert sequence
          Length = 3514

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 284 actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
           ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 398 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 457

                    
Query: 344 cgcatgaaa 352
           | |||||||
Sbjct: 458 cacatgaaa 466
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 284      actttcggaaggatggccataattggaagaaaaagaaggatggcaaaactgtccaagaag 343
                ||||| ||||||| ||||||||||||| ||| || |||||||| || |||||| ||||||
Sbjct: 11428417 actttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaag 11428476

                         
Query: 344      cgcatgaaa 352
                | |||||||
Sbjct: 11428477 cacatgaaa 11428485
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>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence
          Length = 224141

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 205    aggttcaaggtccatgcacagccc 228
              ||||||||||||||||||||||||
Sbjct: 142694 aggttcaaggtccatgcacagccc 142671
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>ref|XM_472596.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 48  ggaggggacggccgggagggagagg 72
           |||||||| ||||||||||||||||
Sbjct: 375 ggaggggaaggccgggagggagagg 351
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>ref|XM_959467.1| Neurospora crassa OR74A hypothetical protein (NCU03154.1) partial
           mRNA
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  aagtggaagcagcagccgcgg 40
           |||||||||||||||||||||
Sbjct: 411 aagtggaagcagcagccgcgg 431
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>ref|XM_330589.1| Neurospora crassa OR74A hypothetical protein (NCU03154.1) partial
           mRNA
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  aagtggaagcagcagccgcgg 40
           |||||||||||||||||||||
Sbjct: 411 aagtggaagcagcagccgcgg 431
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>ref|XM_388606.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08430.1)
           partial mRNA
          Length = 2286

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 ttcgagaagctgaaagcagaggccg 151
           |||||||||| ||||||||||||||
Sbjct: 76  ttcgagaagcagaaagcagaggccg 100
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 48       ggaggggacggccgggagggagagg 72
                |||||||| ||||||||||||||||
Sbjct: 21804181 ggaggggaaggccgggagggagagg 21804157
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 24      ggaagcagcagccgcggcggc 44
               |||||||||||||||||||||
Sbjct: 2423723 ggaagcagcagccgcggcggc 2423743
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>dbj|AK067975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126G21,
          full insert sequence
          Length = 1477

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 48 ggaggggacggccgggagggagagg 72
          |||||||| ||||||||||||||||
Sbjct: 68 ggaggggaaggccgggagggagagg 44
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>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20,
              complete sequence
          Length = 141915

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 48     ggaggggacggccgggagggagagg 72
              |||||||| ||||||||||||||||
Sbjct: 115798 ggaggggaaggccgggagggagagg 115774
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>gb|BC107772.1| Homo sapiens cDNA clone MGC:104216 IMAGE:6451988, complete cds
          Length = 1065

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 40 gaagcagcagccgcggcggc 59
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>gb|BC052105.1| Danio rerio zgc:56402, mRNA (cDNA clone MGC:56402 IMAGE:5605173),
           complete cds
          Length = 1819

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 tgaacttcgagaagctgaaa 141
           ||||||||||||||||||||
Sbjct: 694 tgaacttcgagaagctgaaa 713
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>gb|BC068996.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:5474358), partial cds
          Length = 1808

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 24 gaagcagcagccgcggcggc 43
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>gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosome 15, complete sequence
          Length = 229480

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    cataattggaagaaaaagaa 320
              ||||||||||||||||||||
Sbjct: 103499 cataattggaagaaaaagaa 103518
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>gb|BC035748.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:5749816), with apparent retained intron
          Length = 1850

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 6  gaagcagcagccgcggcggc 25
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>gb|BC050594.2| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:6024800), partial cds
          Length = 1891

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 24 gaagcagcagccgcggcggc 43
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>gb|BC058511.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:5190073), partial cds
          Length = 1850

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 29 gaagcagcagccgcggcggc 48
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>gb|BC026028.1| Homo sapiens nuclear receptor co-repressor 1, mRNA (cDNA clone
          IMAGE:3836580), containing frame-shift errors
          Length = 1966

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 7  gaagcagcagccgcggcggc 26
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>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete
              sequence
          Length = 198743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ggaaagtggaagcagcagcc 36
              ||||||||||||||||||||
Sbjct: 109750 ggaaagtggaagcagcagcc 109769
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>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
             sequence
          Length = 160298

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   tggaagaaaaagaaggatggcaaa 330
             |||||||| |||||||||||||||
Sbjct: 85086 tggaagaacaagaaggatggcaaa 85109
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>gb|AC105288.3| Homo sapiens BAC clone RP11-554F9 from 4, complete sequence
          Length = 142915

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     aagcagcagccgcggcggct 45
              ||||||||||||||||||||
Sbjct: 123682 aagcagcagccgcggcggct 123663
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>ref|XM_943989.1| PREDICTED: Homo sapiens hypothetical protein LOC649947 (LOC649947),
           mRNA
          Length = 486

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  gaagcagcagccgcggcggc 44
           ||||||||||||||||||||
Sbjct: 421 gaagcagcagccgcggcggc 402
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>gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, complete sequence
          Length = 181991

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ggaaagtggaagcagcagcc 36
             ||||||||||||||||||||
Sbjct: 49907 ggaaagtggaagcagcagcc 49926
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 313      aaaaagaaggatggcaaaac 332
                ||||||||||||||||||||
Sbjct: 19935504 aaaaagaaggatggcaaaac 19935523
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>dbj|AB219939.1| Lycopersicon esculentum LeHSP110/ClpB mRNA for heat shock protein,
           complete cds
          Length = 3144

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 304 aattggaagaaaaagaaggatggcaaaactgt 335
           ||||||||||| ||||||||  ||||||||||
Sbjct: 85  aattggaagaagaagaaggaacgcaaaactgt 54
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>ref|NM_200324.1| Danio rerio zgc:56402 (zgc:56402), mRNA
          Length = 1819

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 tgaacttcgagaagctgaaa 141
           ||||||||||||||||||||
Sbjct: 694 tgaacttcgagaagctgaaa 713
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>gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosome 15, complete
            sequence
          Length = 210091

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 301  cataattggaagaaaaagaa 320
            ||||||||||||||||||||
Sbjct: 6088 cataattggaagaaaaagaa 6069
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>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1018E06
          Length = 178499

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   aaaaagaaggatggcaaaac 332
             ||||||||||||||||||||
Sbjct: 73844 aaaaagaaggatggcaaaac 73863
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>emb|BX666064.10| Zebrafish DNA sequence from clone DKEY-6N3 in linkage group 22, complete
              sequence
          Length = 156234

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tgaacttcgagaagctgaaa 141
              ||||||||||||||||||||
Sbjct: 143199 tgaacttcgagaagctgaaa 143180
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>gb|AC005971.5|AC005971 Homo sapiens chromosome 17, clone hRPK.651_L_9, complete sequence
          Length = 192307

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     gaagcagcagccgcggcggc 44
              ||||||||||||||||||||
Sbjct: 144207 gaagcagcagccgcggcggc 144226
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>ref|NM_006311.2| Homo sapiens nuclear receptor co-repressor 1 (NCOR1), mRNA
          Length = 7940

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 23 gaagcagcagccgcggcggc 42
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     aagaagcgcatgaaaaatta 357
               ||||||||||||||||||||
Sbjct: 3248085 aagaagcgcatgaaaaatta 3248104
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>gb|AF044209.1|AF044209 Homo sapiens nuclear receptor co-repressor N-CoR mRNA, complete
          cds
          Length = 7940

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 gaagcagcagccgcggcggc 44
          ||||||||||||||||||||
Sbjct: 23 gaagcagcagccgcggcggc 42
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>emb|AJ009616.3|HSAJ9616 Homo sapiens chromosome 17 sequence from PAC RP1-188B3 region
             D17S842-D17S953 map 17p11.2, complete sequence
          Length = 81514

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    gaagcagcagccgcggcggc 44
             ||||||||||||||||||||
Sbjct: 17921 gaagcagcagccgcggcggc 17940


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,408,515
Number of Sequences: 3902068
Number of extensions: 3408515
Number of successful extensions: 100944
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100676
Number of HSP's gapped (non-prelim): 268
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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