ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13d10 |
|---|---|
| Clone Library Name | barley_pub |
>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4| (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3) (NF-AT3) Length = 902 Score = 32.0 bits (71), Expect = 0.61 Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 9/103 (8%) Frame = +1 Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 288 P PG SSL S F D A A C AA+R G PL + PR++ P W Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225 Query: 289 SPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 417 +P PW G GP L S G P+ P Sbjct: 226 TPEDPW--------SLYGPSPGGRGPEDSWLLLSAPGPTPASP 260
>Y1163_HAEIN (Q57252) Protein HI1163| Length = 1027 Score = 31.6 bits (70), Expect = 0.80 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 139 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264 +P G ++H GFL + A++ A R A G PL VDP Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867
>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ| Length = 1018 Score = 31.6 bits (70), Expect = 0.80 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 142 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264 P G + H GFL + A+ TA R A G P+ VDP Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 30.4 bits (67), Expect = 1.8 Identities = 29/96 (30%), Positives = 33/96 (34%) Frame = +1 Query: 130 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQ 309 PR S SPG +QP A A C A+ G P AA + P+ PP Sbjct: 189 PRLSRSSSETRSPGGTVQPKSPAPLAARC--SASRAGCPTAA----GSLLPAPRPP---- 238 Query: 310 SXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 417 A PA PS R R PS P Sbjct: 239 -------ASSASSPQAAAPAAPSATRLPRRTTPSAP 267
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +1 Query: 121 KP*PRPQPGGSSLHSPGFLLQPPDLAR 201 KP PRPQP S PG PP AR Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -1 Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183 QG GG +E V D G+ + GHPL+ A + A+ GG Sbjct: 29 QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -1 Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183 QG GG +E V D G+ + GHPL+ A + A+ GG Sbjct: 29 QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72
>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 413 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%) Frame = +1 Query: 148 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 291 G G ++PP AR TA AA +G+P +++P SAG+ SW+ Sbjct: 85 GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139 Query: 292 PP 297 PP Sbjct: 140 PP 141
>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5| Length = 435 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +1 Query: 283 SWSPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGP 408 S+SP P Q+ +G P +PS++ +RGV P Sbjct: 240 SFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTP 281
>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 474 Score = 28.9 bits (63), Expect = 5.2 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +1 Query: 151 SSLHSPGFLLQPPDLARS--TAICFRRAAARGWPLAAVD-PRSAG-TPSWSPP 297 +S +P + PD ++ +CF R AARG AA D PR++G P PP Sbjct: 365 NSAFNPIIYCRSPDFRKAFQRLLCFARRAARGGHAAAGDRPRASGCLPGTRPP 417
>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 1000 Score = 28.9 bits (63), Expect = 5.2 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = +1 Query: 115 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 291 S +P P P GSS P PP ++ A A + P A P+ GTP Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850 Query: 292 PPVPW 306 P P+ Sbjct: 851 SPAPY 855
>CT055_MOUSE (Q8R184) Protein C20orf55 homolog| Length = 296 Score = 28.5 bits (62), Expect = 6.7 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Frame = +1 Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAIC---FRRAAA---RGWPLAAVDPR 267 P ++ P P PG ++ SPG +PP L RS + F RAAA R + +DP Sbjct: 159 PLPASPARPYPSPGTTTTSSPG---RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPE 215 Query: 268 SA 273 A Sbjct: 216 EA 217
>QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 346 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%) Frame = -1 Query: 278 VPADLGSTAARGHPLAAARRKQMAVERARSGGWRR--------KPGE 162 +PA L T RG A AR + +E A +GGWR KPGE Sbjct: 62 IPARLTGTRTRGE--AEARVEVTLMEPAAAGGWRAMAKPLRKLKPGE 106
>LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1.67)| (PI4-kinase) (PtdIns-4-kinase) Length = 607 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 224 RRKQMAVERARSGGWRRKPGEWRLDPPGW 138 R K A++ S W+ P EWRL P GW Sbjct: 406 RLKLAAIDNGLSFPWKH-PDEWRLYPYGW 433
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/66 (31%), Positives = 25/66 (37%) Frame = +1 Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPS 285 P +A P P P PGG+ + P PP L S + G L P G P Sbjct: 666 PGATAIPPPPPLPGGTGIPPP-----PPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG 720 Query: 286 WSPPVP 303 PP P Sbjct: 721 IPPPPP 726 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,298,504 Number of Sequences: 219361 Number of extensions: 796088 Number of successful extensions: 2984 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2979 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
