>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score =  108 bits (271), Expect = 4e-24
 Identities = 52/63 (82%), Positives = 53/63 (84%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           LY ELWHACAGPLVTVPR  D VFYFPQGHIEQVEAS NQ A  QM LYDLP KLLCRVI
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117

Query: 409 NVE 417
           NV+
Sbjct: 118 NVD 120

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 92.0 bits (227), Expect = 5e-19
 Identities = 40/65 (61%), Positives = 53/65 (81%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCR 402
           D L  ELWHACAGPLVT+PR G+ V+YFP+GH+EQ+EASM+Q    QM  ++LP K+LC+
Sbjct: 17  DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 76

Query: 403 VINVE 417
           VIN++
Sbjct: 77  VINIQ 81

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPK 390
           S  D LY ELW ACAGPLV VPR G+ VFYFPQGH+EQ+ AS NQ V   ++ +++LPPK
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPK 72

Query: 391 LLCRVINV 414
           +LCRV++V
Sbjct: 73  ILCRVLSV 80

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 41/66 (62%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
 Frame = +1

Query: 220 GDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMR-LYDLPPKLL 396
           G+ LYDELW  CAGPLV VP+  + V+YFPQGH+EQ+EAS  QV  N M+ L+ LPPK+L
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

Query: 397 CRVINV 414
           C V+NV
Sbjct: 66  CNVMNV 71

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPKLLC 399
           D LY ELW  CAGPLV VPR  + VFYFPQGH+EQ+ AS NQ +   ++ ++DLPPK+LC
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILC 79

Query: 400 RVINV 414
           RV++V
Sbjct: 80  RVLDV 84

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 31/63 (49%), Positives = 49/63 (77%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y ELWHACAGPL  +P+ G++V YFPQGH+EQ +A ++  +  ++  +DL P+++CRV+
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVV 120

Query: 409 NVE 417
           NV+
Sbjct: 121 NVQ 123

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +       + D P KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83

Query: 409 NVE 417
            ++
Sbjct: 84  AIQ 86

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 32/62 (51%), Positives = 42/62 (67%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +         DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83

Query: 409 NV 414
            +
Sbjct: 84  AI 85

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VE S  +       + DLP KL CRVI
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83

Query: 409 NV 414
            +
Sbjct: 84  AI 85

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 31/62 (50%), Positives = 43/62 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NV 414
            +
Sbjct: 84  AI 85

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ ++YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83

Query: 409 NVE 417
            ++
Sbjct: 84  AIQ 86

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRVINV 414
           ELWHACAGPLV +P+VG LV+YF QGH EQV  S  + A  Q+  Y +LP +L+C+V NV
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNV 113

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = +1

Query: 226 PLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRV 405
           P+  +LWHACAGPLV++P VG LV YFPQGH EQV ASM +         +LP KL+C +
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLL 78

Query: 406 INV 414
            +V
Sbjct: 79  HSV 81

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 29/63 (46%), Positives = 44/63 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW+ CAGPL  +P+ G+ V+YFPQGHIE +E S      +   ++DLP KL CRV+
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 83

Query: 409 NVE 417
            ++
Sbjct: 84  AID 86

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMN-QVAGNQMRLYDLPPKLLCRV 405
           L  ELWHACAGPLV++P  G  V YFPQGH EQV A+ N +V G+      LPP+L+C++
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78

Query: 406 INV 414
            NV
Sbjct: 79  HNV 81

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NV 414
            +
Sbjct: 84  AI 85

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NV 414
            +
Sbjct: 84  AI 85

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 33/59 (55%), Positives = 40/59 (67%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINV 414
           ELWHACAGPL+++P  G LV YFPQGH EQV ASM +         +LP KL+C + NV
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNV 82

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRV 405
           L  ELWHACAGPLV++P VG  V YFPQGH EQV AS N+     +  Y  L P+L+C++
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79

Query: 406 INV 414
            NV
Sbjct: 80  HNV 82

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 32/68 (47%), Positives = 44/68 (64%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKL 393
           SAG  +  ELWHACAGPL+++P+ G LV YFPQGH+E       Q       +Y LPP +
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLE-------QAPDFSAAIYGLPPHV 98

Query: 394 LCRVINVE 417
            CR+++V+
Sbjct: 99  FCRILDVK 106

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 26/60 (43%), Positives = 36/60 (60%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYF QGH E   A  +  A        +PP +LCRV++V+
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR------VPPLILCRVVSVK 63

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/60 (43%), Positives = 37/60 (61%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYFPQGH E     ++   GN      +PP +LCRV+ ++
Sbjct: 19  QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD--FGN----LPIPPMVLCRVLAIK 72

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +1

Query: 214 SAGDPLYDE----LWHACAGPLVTVPRVGDLVFYFPQGHIE 324
           +AGD  + E    +W ACAG  V +P +   V+YFPQGH+E
Sbjct: 7   TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVE 47

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 274  VPRVGDLVFYFPQGHIEQVEA 336
            VP++GD V YFPQGH   +EA
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEA 979

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 271  TVPRVGDLVFYFPQGHIEQVEASMNQV--AGNQMRLYDLPPKLL 396
            T+ R GD+V Y P GHIE +    +QV   G+++ L ++   LL
Sbjct: 1871 TMYRTGDMVRYLPDGHIEYLGRIDHQVKIRGHRIELGEIEATLL 1914

>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein|
           4.2) (Ultrahigh sulfur keratin-associated protein 4.2)
          Length = 136

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 365 CASTICRPSCSAGS 406
           C ST CRP+CS+GS
Sbjct: 121 CVSTCCRPTCSSGS 134

>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 274  VPRVGDLVFYFPQGHIEQVEA 336
            VP++GD V YF QGH   +EA
Sbjct: 958  VPQMGDEVIYFRQGHEAYIEA 978

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 280 RVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL--PPKLLCRVINVE 417
           R G   FY PQ  ++Q E    Q+AG    L+DL   P +L R+ N++
Sbjct: 34  RAGICYFYPPQTLLDQQELLCGQLAGVVRCLWDLSGTPPMLIRMRNLK 81

>PEPP1_HUMAN (Q8NHV9) Paired-like homeobox protein PEPP-1 (Ovary-, testis- and|
           epididymis-expressed gene protein)
          Length = 184

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 327 GGGLHEPGRRQPDAPLRSAAQAALPGHQ 410
           GGG ++  R+QP  P    AQAA+ G Q
Sbjct: 70  GGGGNQEPRQQPQPPPEEPAQAAMEGPQ 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,412,851
Number of Sequences: 219361
Number of extensions: 294999
Number of successful extensions: 1282
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)