Clone Name | bastl13d03 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 ccgctgccgcacagcgtggcc 281 ||||||||||||||||||||| Sbjct: 1248465 ccgctgccgcacagcgtggcc 1248485
>gb|AC113318.8| Mus musculus chromosome 3, clone RP23-442I7, complete sequence Length = 213409 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 gggcagtgaatgtgaagcagcgatt 312 |||||||||||||||||||| |||| Sbjct: 86985 gggcagtgaatgtgaagcagagatt 86961
>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence Length = 150646 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 tctgcacctgcatccatccac 167 ||||||||||||||||||||| Sbjct: 64571 tctgcacctgcatccatccac 64551
>dbj|AB063330.1| Paracoccus denitrificans genes for quinohemoprotein amine dehydrogenase 60 kDa, unknown, 9 kDa, 40 kDa subunits Length = 6273 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 cgggtgccgctgccgcacagc 275 ||||||||||||||||||||| Sbjct: 5100 cgggtgccgctgccgcacagc 5120
>ref|XM_526905.1| PREDICTED: Pan troglodytes erbb2 interacting protein (LOC471527), mRNA Length = 5001 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ccggccgggtgccgctgccg 269 |||||||||||||||||||| Sbjct: 239 ccggccgggtgccgctgccg 258
>gb|AC113945.26| Mus musculus chromosome 3, clone RP24-96D10, complete sequence Length = 144239 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ctcctctgctcacgaggctg 43 |||||||||||||||||||| Sbjct: 130719 ctcctctgctcacgaggctg 130700
>gb|AC186168.1| Ornithorhynchus anatinus chromosome UNK clone OABb-35C10, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gtgggcagtgaatgtgaagcagcg 309 |||||||| ||||||||||||||| Sbjct: 121422 gtgggcagggaatgtgaagcagcg 121445
>ref|XM_380981.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00805.1) partial mRNA Length = 1989 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 atccaacccaacccgtcttc 24 |||||||||||||||||||| Sbjct: 1440 atccaacccaacccgtcttc 1459
>gb|AC125096.3| Mus musculus BAC clone RP24-181K19 from chromosome 18, complete sequence Length = 154941 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tctgctcacgaggctgctgc 47 |||||||||||||||||||| Sbjct: 142234 tctgctcacgaggctgctgc 142215
>gb|AC131109.3| Mus musculus BAC clone RP23-362M7 from chromosome 18, complete sequence Length = 177690 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tctgctcacgaggctgctgc 47 |||||||||||||||||||| Sbjct: 52895 tctgctcacgaggctgctgc 52876
>emb|BX842641.1| Neurospora crassa DNA linkage group I BAC contig B22I21 Length = 124321 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 catcccaagagcctgcaagacttc 142 ||||||||||||||||||| |||| Sbjct: 81203 catcccaagagcctgcaagtcttc 81226
>gb|AC008479.6| Homo sapiens chromosome 5 clone CTC-392L24, complete sequence Length = 176691 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tcctcctcccaactcacagc 115 |||||||||||||||||||| Sbjct: 34990 tcctcctcccaactcacagc 34971
>gb|AC142502.3| Mus musculus BAC clone RP24-530L11 from 3, complete sequence Length = 160259 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ctcctctgctcacgaggctg 43 |||||||||||||||||||| Sbjct: 404 ctcctctgctcacgaggctg 385
>emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chromosome 4, complete sequence Length = 197911 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gtcataagtagtaaaacatt 96 |||||||||||||||||||| Sbjct: 133412 gtcataagtagtaaaacatt 133431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,175,728 Number of Sequences: 3902068 Number of extensions: 2175728 Number of successful extensions: 41826 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41782 Number of HSP's gapped (non-prelim): 44 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)