ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13d01 |
|---|---|
| Clone Library Name | barley_pub |
>CLPB_HELPJ (Q9ZMH1) Chaperone clpB| Length = 856 Score = 36.2 bits (82), Expect = 0.020 Identities = 21/62 (33%), Positives = 35/62 (56%) Frame = +1 Query: 160 QALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAACLRSHSHPLQCKAL 339 + +T + E + A++LA NA+VTP+H+ AML G+L A + P+ +AL Sbjct: 5 EKMTDQLHETLDSAIALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKM---PVDIEAL 61 Query: 340 EL 345 +L Sbjct: 62 KL 63
>HS101_ARATH (P42730) Heat shock protein 101| Length = 911 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +1 Query: 160 QALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAA 297 + T + E + A LA G+AQ TPLH+A A+++ P G+ A Sbjct: 4 EKFTHKTNETIATAHELAVNAGHAQFTPLHLAGALISDPTGIFPQA 49
>CLPB_BIFLO (Q8G4X4) Chaperone clpB| Length = 889 Score = 35.8 bits (81), Expect = 0.026 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +1 Query: 154 VQQALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRA 294 ++Q T A E V A+ A GNAQV LHV A+L G+ R+ Sbjct: 1 MEQKFTTMAQEAVGDAIQSASAAGNAQVETLHVMDALLRQENGVARS 47
>CLPB_HELPY (P71404) Chaperone clpB| Length = 856 Score = 35.0 bits (79), Expect = 0.044 Identities = 21/62 (33%), Positives = 34/62 (54%) Frame = +1 Query: 160 QALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAACLRSHSHPLQCKAL 339 + +T + E + A++LA NA+VTP+H+ AML G+L A + P+ +AL Sbjct: 5 EKMTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKM---PVDIQAL 61 Query: 340 EL 345 L Sbjct: 62 RL 63
>HS101_ORYSA (Q6F2Y7) Heat shock protein 101| Length = 912 Score = 35.0 bits (79), Expect = 0.044 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = +1 Query: 169 TAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAA 297 T + E + A +A G+AQ+TPLH+ +A+ A G+LR A Sbjct: 7 THKTNEALVAAHEIASEAGHAQLTPLHLVAALAADKGGILRQA 49
>CLPB_RHOBA (Q7UM33) Chaperone clpB| Length = 881 Score = 33.9 bits (76), Expect = 0.099 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +1 Query: 166 LTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGL 285 LT +A VV +A + A GNA++ PLHV SA + G+ Sbjct: 8 LTTQAQNVVAEAQAQATSAGNAEIDPLHVLSAAVNQRDGI 47
>CLPB_RICPR (Q9ZEA9) Chaperone clpB| Length = 858 Score = 33.5 bits (75), Expect = 0.13 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = +1 Query: 169 TAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRA 294 TA A V+ SLA + + Q+ PLH+ S++L+ G+++A Sbjct: 7 TAHAKSVIANHQSLAIKNDHQQILPLHLLSSLLSEETGIIQA 48
>CLPB_RALSO (Q8XZR0) Chaperone clpB| Length = 862 Score = 32.0 bits (71), Expect = 0.37 Identities = 21/66 (31%), Positives = 30/66 (45%) Frame = +1 Query: 166 LTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAACLRSHSHPLQCKALEL 345 LT E + A SLA N + PLH+ AML P G + R+ + K LE+ Sbjct: 6 LTTRFQEALADAQSLALGNDNPYIEPLHLLLAMLRQPDGATKNLLARA---GVNAKGLEI 62 Query: 346 CFNVAL 363 + A+ Sbjct: 63 ALDNAI 68
>CLPB_CAUCR (Q9A9T4) Chaperone clpB| Length = 859 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = +1 Query: 178 AAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAACLRSHSHPLQ 327 A + V+ A SLA RG+ Q P H+ +L GL RA + P Q Sbjct: 10 AKQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGRPDQ 59
>CLPB_PROFR (Q7WSY8) Chaperone clpB (Fragment)| Length = 729 Score = 31.6 bits (70), Expect = 0.49 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +1 Query: 160 QALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAP----AGLLRA 294 + LT + + V AV LA +GN P+H+ AML P A LL+A Sbjct: 4 EKLTTMSRDAVTAAVRLALTKGNPTAEPVHLLHAMLMVPESSVAPLLKA 52
>CLPB_PORGI (Q7MVE7) Chaperone clpB| Length = 863 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 169 TAEAAEVVKQAVSLARRRGNAQVTPLHVASAML 267 T ++ E ++QAV L RR G + P H+ A++ Sbjct: 7 TIKSQEALQQAVELTRRHGQQAIEPQHLLKAVM 39
>CLPB_GEOSL (Q74FF1) Chaperone clpB| Length = 865 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +1 Query: 160 QALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLL 288 + +T + E + A LA R+GN + P H+ ++L GL+ Sbjct: 5 EKMTIKTQEALAGAQQLAARQGNGSIEPEHLLVSLLEQEGGLI 47
>DNAJ_DEIRA (Q9RUG2) Chaperone protein dnaJ| Length = 376 Score = 29.3 bits (64), Expect = 2.4 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -1 Query: 314 ECERRHAARSSPAGAASIALATCSG 240 ECE H R+ P G + +TC+G Sbjct: 146 ECEHCHGTRTEPGGKPPVTCSTCNG 170
>ZN278_HUMAN (Q9HBE1) Zinc finger protein 278 (POZ-, AT hook-, and zinc| finger-containing protein) (Zinc finger sarcoma gene protein) (BTB-POZ domain zinc finger transcription factor) (Protein kinase A RI-alpha subunit-associated protein) (Zinc finger and Length = 687 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/70 (31%), Positives = 31/70 (44%) Frame = +1 Query: 94 ASYRSLIGGQQLDMRAGGCTVQQALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAA 273 AS L G +L M AG + Q LT+ V A L +RG + ++ +M + Sbjct: 224 ASLPVLPGVDRLPMVAGPLS-PQLLTSPFPSVASSAPPLTGKRGRGRPRKANLLDSMFGS 282 Query: 274 PAGLLRAACL 303 P GL A L Sbjct: 283 PGGLREAGIL 292
>CLPB_RHOPA (Q6N1H2) Chaperone clpB| Length = 879 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 190 VKQAVSLARRRGNAQVTPLHVASAMLAAPAGL 285 ++ A SLA R G+ Q +PLH+ +L GL Sbjct: 14 IQSAQSLAMREGHQQFSPLHILKVLLDDSEGL 45
>CLPB_YERPE (Q74X11) Chaperone clpB| Length = 857 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1 Query: 166 LTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLR 291 LT++ + A SLA R N + PLH+ SA+L G +R Sbjct: 6 LTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVR 47
>CLPB_BORPE (Q7VYV6) Chaperone clpB| Length = 865 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 166 LTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAP 276 LT + + + A SLA R + + P+HV +A+L P Sbjct: 6 LTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDP 42
>CLPB_BORPA (Q7W9E6) Chaperone clpB| Length = 865 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 166 LTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAP 276 LT + + + A SLA R + + P+HV +A+L P Sbjct: 6 LTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDP 42
>CLPB_BORBR (Q7WHB6) Chaperone clpB| Length = 865 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 166 LTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAP 276 LT + + + A SLA R + + P+HV +A+L P Sbjct: 6 LTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDP 42
>CLPB_BACNO (P17422) Chaperone clpB| Length = 860 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 154 VQQALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAML 267 + + TA E + A SLA + +A + PLH+ SA+L Sbjct: 6 MSKKFTARFQEALSAAQSLAVGKDHAYIEPLHIFSALL 43
>MURA_THET8 (Q5SM03) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 425 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 103 RSLIGGQ--QLDMRAGGCTVQQALTAEAAEVVKQAVSLAR 216 R L G Q LD+RAGG V AL+AE A ++ L R Sbjct: 358 RRLHGAQVKALDIRAGGALVVAALSAEGASEIEGVYFLER 397
>MURA_THET2 (Q72GJ4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 425 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 103 RSLIGGQ--QLDMRAGGCTVQQALTAEAAEVVKQAVSLAR 216 R L G Q LD+RAGG V AL+AE A ++ L R Sbjct: 358 RRLHGAQVKALDIRAGGALVVAALSAEGASEIEGVYFLER 397
>ILVD2_BORBR (Q7WJP7) Dihydroxy-acid dehydratase 2 (EC 4.2.1.9) (DAD 2)| Length = 570 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 172 AEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAACLRSHSH 318 A+ +V LARRR Q P + L A L+R ACL + +H Sbjct: 508 ADTLDVALSDEELARRRAAYQAPPQARLAGALEKYAALVRPACLGAVTH 556
>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor| Length = 2703 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 326 WSGCECERRHAARSSPA--GAASIALATCSGVTCAFP 222 ++G CE ++ SSP GA ALA S TC+ P Sbjct: 170 YTGERCETKNLCASSPCRNGATCTALAGSSSFTCSCP 206
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3148 Score = 27.7 bits (60), Expect = 7.1 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = +1 Query: 145 GCTVQQALTAEAAEVVKQAVSLARRRGNA---QVTPLHVASAMLAAPAGLLRAACLRSHS 315 G V Q +T + E +Q L R + N Q V SAM AG +CL Sbjct: 2476 GVLVTQPITMDQEEETQQEEDLERTQLNVLAVQAITSLVLSAMTLPTAGNPAVSCLEQQP 2535 Query: 316 HPLQCKALELCF 351 KALE F Sbjct: 2536 RNKSLKALETRF 2547
>CLPB_WOLSU (Q7M9X4) Chaperone clpB| Length = 857 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 160 QALTAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAA 297 + +T + E ++QA+SLA N +V H+A A+L +L A Sbjct: 5 EKMTHQLRETLEQALSLALHAKNPEVDLPHMAWALLINSTSILNQA 50
>Y3154_MYCBO (P0A651) Hypothetical UPF0089 protein Mb3154c| Length = 463 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 196 QAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAA 297 Q+ S + RRG +V P +A A AG++RAA Sbjct: 170 QSQSASVRRGGFRVNPSEALTASTAVMAGIVRAA 203
>Y3130_MYCTU (P0A650) Hypothetical UPF0089 protein Rv3130c/MT3216| Length = 463 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 196 QAVSLARRRGNAQVTPLHVASAMLAAPAGLLRAA 297 Q+ S + RRG +V P +A A AG++RAA Sbjct: 170 QSQSASVRRGGFRVNPSEALTASTAVMAGIVRAA 203
>CLPB_MEIRU (Q7X2S8) Chaperone clpB| Length = 854 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +1 Query: 169 TAEAAEVVKQAVSLARRRGNAQVTPLHVASAMLAAPAGL 285 T +A + + Q+ LAR ++++ H+A+ ML AGL Sbjct: 7 TEQARQAIAQSQVLARESAHSKIDLPHLAAVMLRDAAGL 45
>IKBA_PIG (Q08353) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) (ECI-6) Length = 314 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 157 QQALTAEAAEVVKQAVSLARRRGNAQVTPLHVA 255 ++ALT E VK ++ + N Q TPLH+A Sbjct: 86 EKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLA 118
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = -1 Query: 326 WSGCECERRHAARSSPAGAASIALATCSGVTCAFP 222 W+G +C+ R ++P + LAT + C P Sbjct: 146 WTGEQCQLRDFCSANPCANGGVCLATYPQIQCRCP 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,328,494 Number of Sequences: 219361 Number of extensions: 564780 Number of successful extensions: 1624 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 1606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1624 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
