ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13c12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 8e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 145 gtcgcccgcgacggaggacgagacattggcgcggaagcgctcccgccgcgtgagcttcgc 204 |||||| ||||||||||||||||| | ||| ||| ||||||||||||||| |||||||| Sbjct: 23822327 gtcgccggcgacggaggacgagacgatcgcgaggaggcgctcccgccgcgtcagcttcgc 23822268 Query: 205 ggacaccaccgccgtgcacgtgttcgaccgcgacgaggacttcgagacgcccccggacga 264 ||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 23822267 ggagatcaccgcggtgcacgtgttcgaccgcgacgaggacttcgagacccccccggagga 23822208 Query: 265 gcg 267 ||| Sbjct: 23822207 gcg 23822205
>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0556B08 Length = 136775 Score = 149 bits (75), Expect = 8e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 145 gtcgcccgcgacggaggacgagacattggcgcggaagcgctcccgccgcgtgagcttcgc 204 |||||| ||||||||||||||||| | ||| ||| ||||||||||||||| |||||||| Sbjct: 61992 gtcgccggcgacggaggacgagacgatcgcgaggaggcgctcccgccgcgtcagcttcgc 61933 Query: 205 ggacaccaccgccgtgcacgtgttcgaccgcgacgaggacttcgagacgcccccggacga 264 ||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 61932 ggagatcaccgcggtgcacgtgttcgaccgcgacgaggacttcgagacccccccggagga 61873 Query: 265 gcg 267 ||| Sbjct: 61872 gcg 61870
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 303 gcgcgggcggcgcggcggagggcgacgagacggaggg 339 ||||||||| || |||||||||||||||| ||||||| Sbjct: 337770 gcgcgggcgacgaggcggagggcgacgaggcggaggg 337734
>ref|NM_210848.1| Eremothecium gossypii AFL054Cp (AFL054C), mRNA Length = 2055 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggagggcgacgagacggaggg 339 ||||||||| || |||||||||||||||| ||||||| Sbjct: 464 gcgcgggcgacgaggcggagggcgacgaggcggaggg 500
>ref|XM_478766.1| Oryza sativa (japonica cultivar-group), mRNA Length = 821 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 200 gcgcgggcggcgcggcggaggg 221
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 47419 gcgcgggcggcgcggcggaggg 47440
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 145506 gcgcgggcggcgcggcggaggg 145527
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 23051089 gcgcgggcggcgcggcggaggg 23051110
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 22873197 gcgcgggcggcgcggcggaggg 22873176
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 66464 gcgcgggcggcgcggcggaggg 66443
>dbj|AK067599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109B01, full insert sequence Length = 820 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggaggg 324 |||||||||||||||||||||| Sbjct: 199 gcgcgggcggcgcggcggaggg 220
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 ggcggcgcggcggagggcgac 328 ||||||||||||||||||||| Sbjct: 8219953 ggcggcgcggcggagggcgac 8219973
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 ggcggcgcggcggagggcgac 328 ||||||||||||||||||||| Sbjct: 8217788 ggcggcgcggcggagggcgac 8217808
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 gcgggcggcgcggcggagggc 325 ||||||||||||||||||||| Sbjct: 5679295 gcgggcggcgcggcggagggc 5679275
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 ggcggcgcggcggagggcgac 328 ||||||||||||||||||||| Sbjct: 151383 ggcggcgcggcggagggcgac 151403
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 gacattggcgcggaagcgctc 186 ||||||||||||||||||||| Sbjct: 2816231 gacattggcgcggaagcgctc 2816211
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 gcgggcggcgcggcggagggc 325 ||||||||||||||||||||| Sbjct: 107031 gcgggcggcgcggcggagggc 107011
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 cgcgcgggcggcgcggcggagggc 325 ||||||||||| |||||||||||| Sbjct: 1283093 cgcgcgggcggtgcggcggagggc 1283070
>ref|XM_476260.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tggcgcggaagcgctcccgc 190 |||||||||||||||||||| Sbjct: 545 tggcgcggaagcgctcccgc 564
>ref|NM_192548.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 831 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cgcgggcggcgcggcggagg 323 |||||||||||||||||||| Sbjct: 327 cgcgggcggcgcggcggagg 346
>gb|AY548484.1| Frog virus 3, complete genome Length = 105903 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gagacggagggagaggacga 348 |||||||||||||||||||| Sbjct: 37383 gagacggagggagaggacga 37402
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ggccccgcgcgggcggcgcggcgg 320 |||||||| ||||||||||||||| Sbjct: 3231098 ggccccgctcgggcggcgcggcgg 3231075
>gb|AC145273.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0055E23, complete sequence Length = 156572 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tggcgcggaagcgctcccgc 190 |||||||||||||||||||| Sbjct: 59644 tggcgcggaagcgctcccgc 59663
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ccgcgcgggcggcgcggcgg 320 |||||||||||||||||||| Sbjct: 1249366 ccgcgcgggcggcgcggcgg 1249347
>ref|NM_031866.1| Homo sapiens frizzled homolog 8 (Drosophila) (FZD8), mRNA Length = 3195 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggagggcg 326 |||||||||||||||||| ||||| Sbjct: 1060 gcgcgggcggcgcggcggcgggcg 1083
>gb|AY545029.1| Burkholderia pseudomallei clone BPtf0044 AndR (andR) gene, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ccgcgcgggcggcgcggcgg 320 |||||||||||||||||||| Sbjct: 681 ccgcgcgggcggcgcggcgg 662
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 gggaggccccgcgcgggcggcgcg 316 ||||| |||||||||||||||||| Sbjct: 2192835 gggagtccccgcgcgggcggcgcg 2192812
>emb|AL121749.14|HSBA425A6 Human DNA sequence from clone RP11-425A6 on chromosome 10 Contains the 3' end of the gene for cyclin fold protein 1 (CFP1) (CBCP1), the gene for connexin40.1 (CX40.1) (FLJ90023), the FZD8 gene for frizzled homolog 8 (Drosophila) and two CpG islands, complete sequence Length = 166007 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 gcgcgggcggcgcggcggagggcg 326 |||||||||||||||||| ||||| Sbjct: 130548 gcgcgggcggcgcggcggcgggcg 130525
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ccgcgcgggcggcgcggcgg 320 |||||||||||||||||||| Sbjct: 2565422 ccgcgcgggcggcgcggcgg 2565403
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gggcggcgcggcggagggcg 326 |||||||||||||||||||| Sbjct: 2801147 gggcggcgcggcggagggcg 2801128
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ccgcgcgggcggcgcggcgg 320 |||||||||||||||||||| Sbjct: 197513 ccgcgcgggcggcgcggcgg 197532
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gcgcggcggagggcgacgagacgg 335 |||||||||||||||||| ||||| Sbjct: 22022307 gcgcggcggagggcgacgggacgg 22022330 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgaccgcgacgaggacttcg 248 |||||||||||||||||||| Sbjct: 9579903 cgaccgcgacgaggacttcg 9579884 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gccggaaccctagctccacc 83 |||||||||||||||||||| Sbjct: 5534082 gccggaaccctagctccacc 5534101
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tggcgcggaagcgctcccgc 190 |||||||||||||||||||| Sbjct: 11334367 tggcgcggaagcgctcccgc 11334386
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cgcgggcggcgcggcggagg 323 |||||||||||||||||||| Sbjct: 22884834 cgcgggcggcgcggcggagg 22884815
>gb|AC007329.7|AC007329 Drosophila melanogaster, chromosome 2R, region 50B-50C, BAC clone BACR14P04, complete sequence Length = 126140 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 cgttttccccaacgtttccaacgc 65 ||||||||||||||||| |||||| Sbjct: 77194 cgttttccccaacgttttcaacgc 77171
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cgcgggcggcgcggcggagg 323 |||||||||||||||||||| Sbjct: 88391 cgcgggcggcgcggcggagg 88372
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 ttcgaccgcgacgaggacttcgag 250 |||||||||||||||||| ||||| Sbjct: 1054344 ttcgaccgcgacgaggacgtcgag 1054321
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 117585 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gccggaaccctagctccacc 83 |||||||||||||||||||| Sbjct: 64057 gccggaaccctagctccacc 64038
>dbj|AK121788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094F11, full insert sequence Length = 1930 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgaccgcgacgaggacttcg 248 |||||||||||||||||||| Sbjct: 801 cgaccgcgacgaggacttcg 782
>dbj|AK110612.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H05, full insert sequence Length = 1246 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tggcgcggaagcgctcccgc 190 |||||||||||||||||||| Sbjct: 566 tggcgcggaagcgctcccgc 585
>dbj|AK071599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107I12, full insert sequence Length = 1906 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgaccgcgacgaggacttcg 248 |||||||||||||||||||| Sbjct: 889 cgaccgcgacgaggacttcg 908
>gb|AE003817.3| Drosophila melanogaster chromosome 2R, section 33 of 73 of the complete sequence Length = 265472 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 cgttttccccaacgtttccaacgc 65 ||||||||||||||||| |||||| Sbjct: 37204 cgttttccccaacgttttcaacgc 37181
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 cgcgggcggcgcggcggagggcga 327 |||||||||||||||||| ||||| Sbjct: 1818705 cgcgggcggcgcggcggacggcga 1818682
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 gccgtgcacgtgttcgaccgcgac 238 ||||||||||||||||||| |||| Sbjct: 1558531 gccgtgcacgtgttcgaccacgac 1558508
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gggcggcgcggcggagggcg 326 |||||||||||||||||||| Sbjct: 849949 gggcggcgcggcggagggcg 849930
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gcgcggcggagggcgacgagacgg 335 |||||||||||||||||| ||||| Sbjct: 21950652 gcgcggcggagggcgacgggacgg 21950675 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgaccgcgacgaggacttcg 248 |||||||||||||||||||| Sbjct: 9579788 cgaccgcgacgaggacttcg 9579769 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gccggaaccctagctccacc 83 |||||||||||||||||||| Sbjct: 5534071 gccggaaccctagctccacc 5534090
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138308 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gcgcggcggagggcgacgagacgg 335 |||||||||||||||||| ||||| Sbjct: 128435 gcgcggcggagggcgacgggacgg 128458
>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165137 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgaccgcgacgaggacttcg 248 |||||||||||||||||||| Sbjct: 43214 cgaccgcgacgaggacttcg 43195
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gccggaaccctagctccacc 83 |||||||||||||||||||| Sbjct: 86887 gccggaaccctagctccacc 86906
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gccggaaccctagctccacc 83 |||||||||||||||||||| Sbjct: 118803 gccggaaccctagctccacc 118784
>gb|M11392.1|CHKH33A1 Chicken histone gene encoding replacement variant H3.3A, segment 1 of 2 Length = 3897 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 cgcgggcggcgcggcggagggcga 327 ||||||| |||||||||||||||| Sbjct: 692 cgcgggctgcgcggcggagggcga 669
>dbj|AB043703.1| Homo sapiens FZD8 mRNA for seven-transmembrane receptor Frizzled-8, complete cds Length = 3195 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 gcgcgggcggcgcggcggagggcg 326 |||||||||||||||||| ||||| Sbjct: 1060 gcgcgggcggcgcggcggcgggcg 1083 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,882,517 Number of Sequences: 3902068 Number of extensions: 1882517 Number of successful extensions: 41985 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39957 Number of HSP's gapped (non-prelim): 2028 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
