>STB3_ASHGO (Q750U1) Protein STB3|
          Length = 511

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 258 QPPWKLSSDQNVIFSARVRSPDSGPARR 175
           +PP +LS  Q V+F AR+R+P+ G  RR
Sbjct: 283 EPP-ELSDQQEVLFRARLRAPNGGSRRR 309

>JHD1_YARLI (Q6C423) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 510

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 249 WKLSSDQNVIFSARVRSPDS 190
           W LS+DQNV+F   V SPDS
Sbjct: 293 WCLSADQNVVFLPDVLSPDS 312

>CDC31_YEAST (P06704) Cell division control protein 31 (Nucleoporin CDC31)|
           (Nuclear pore protein CDC31)
          Length = 161

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 161 KNRSILLAGPESGDLTRAEKMTF*SLLSFHGG*QDLRADYILDSEEIKCAM 313
           KNRS L +GP + +L   +K       S      D+  D  LD  E+K AM
Sbjct: 3   KNRSSLQSGPLNSELLEEQKQEIYEAFSLF----DMNNDGFLDYHELKVAM 49

>ZN541_HUMAN (Q9H0D2) Zinc finger protein 541|
          Length = 792

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 150 ATPSRTDRSSSPARSPETSRAPRR*HFDHY*ASTVADKTSVLIIFSIQKKLSAPCQDPTQ 329
           A P   +   SPAR  +T+    R   +    ST  D    L + ++   L+AP  DP++
Sbjct: 59  AGPGNPEAEGSPARRRKTTPGVPR---EASPGSTRRDAKGGLKVAAVPTPLAAPSLDPSR 115

Query: 330 TGMISSL 350
              ISSL
Sbjct: 116 NPDISSL 122

>DLL4_XENLA (P53775) Homeobox protein DLL-4 (XDLL-4)|
          Length = 285

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 365 YHPMHQRRYHPCLSWILAWRT*FLLNREYNQHGGLVSHRGSL 240
           YH +H+ +  P L    A  + +  N++  QH G VS  G L
Sbjct: 22  YHSLHKSQESPTLPVSTATDSSYYTNQQQQQHCGAVSPYGQL 63

>ZN541_MACFA (Q4R2Z8) Zinc finger protein 541|
          Length = 803

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 147 DATPSRTDRSSSPARSPETSRAPRR*HFDHY*ASTVADKTSVLIIFSIQKKLSAPCQDPT 326
           +A P   +   SPAR  +T+    R   +    +T  D    L + ++   L+AP  DP+
Sbjct: 58  NAGPGNPEAEGSPARRRKTTPGVAR---EASPGNTRRDAKGGLKVAAVPTPLAAPSLDPS 114

Query: 327 QTGMISSL 350
           +   ISSL
Sbjct: 115 RNPDISSL 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,392,044
Number of Sequences: 219361
Number of extensions: 518113
Number of successful extensions: 1336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)