ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 3e-23
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
4gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 117 3e-23
5gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 46 0.10
6gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 46 0.10
7ref|XM_757278.1| Ustilago maydis 521 hypothetical protein (UM062... 46 0.10
8dbj|AK107425.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
9dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 46 0.10
10ref|XM_471722.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
11gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
12gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
13ref|XM_322859.1| Neurospora crassa OR74A predicted protein (NCU1... 42 1.6
14ref|XM_953024.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
15gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome... 42 1.6
16gb|AE005849.1| Caulobacter crescentus CB15 section 175 of 359 of... 42 1.6
17gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.6
18gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 o... 42 1.6
23dbj|AK100039.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
24dbj|AK099875.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
25gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, comple... 42 1.6
26dbj|AK061132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
27dbj|AK059594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
29emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
30gb|AY619724.1| Antheraea pernyi nucleopolyhedrovirus p87, HE65, ... 40 6.2
31gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 40 6.2
32gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.2
33gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, com... 40 6.2
34gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete... 40 6.2
35gb|DQ486030.1| Antheraea pernyi nucleopolyhedrovirus, complete g... 40 6.2
36ref|XM_323700.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.2
37ref|XM_951236.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.2
38gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete se... 40 6.2
39ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 6.2
40gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 6.2
41gb|DQ428095.1| Sorghum bicolor voucher PI585454 locus PRC0162 ge... 40 6.2
42gb|DQ428094.1| Sorghum bicolor voucher PI267539 locus PRC0162 ge... 40 6.2
43gb|DQ428093.1| Sorghum bicolor voucher PI267408 locus PRC0162 ge... 40 6.2
44gb|DQ428092.1| Sorghum bicolor voucher PI152702 locus PRC0162 ge... 40 6.2
45gb|DQ428091.1| Sorghum bicolor voucher NSL92371 locus PRC0162 ge... 40 6.2
46gb|DQ428090.1| Sorghum bicolor voucher NSL87666 locus PRC0162 ge... 40 6.2
47gb|DQ428089.1| Sorghum bicolor voucher NSL56174 locus PRC0162 ge... 40 6.2
48gb|DQ428088.1| Sorghum bicolor voucher NSL56003 locus PRC0162 ge... 40 6.2
49gb|DQ428087.1| Sorghum bicolor voucher NSL55243 locus PRC0162 ge... 40 6.2
50gb|DQ428086.1| Sorghum bicolor voucher NSL51365 locus PRC0162 ge... 40 6.2
51gb|DQ428085.1| Sorghum bicolor voucher NSL51030 locus PRC0162 ge... 40 6.2
52gb|DQ428084.1| Sorghum bicolor voucher NSL50875 locus PRC0162 ge... 40 6.2
53gb|AC117578.9| Mus musculus chromosome 5, clone RP23-36I22, comp... 40 6.2
54gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 40 6.2
55gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, compl... 40 6.2
56emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.2
57gb|AY104032.1| Zea mays PCO099184 mRNA sequence 40 6.2
58gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Ho... 40 6.2 
>dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010C12, full
           insert sequence
          Length = 4093

 Score =  240 bits (121), Expect = 3e-60
 Identities = 246/288 (85%), Gaps = 6/288 (2%)
 Strand = Plus / Plus

                                                                       
Query: 174 caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 227
           |||||| |||||||||||| ||||||||||||| |||||      || || |||||| ||
Sbjct: 131 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 190

                                                                       
Query: 228 tgaagggggcgagaggaagaaccccaaggcttttgccttccgttcagcaacaaaagcgaa 287
           ||| || ||||||||||||||||| |||||||||||||| |  |||||  |||| || ||
Sbjct: 191 tgacggtggcgagaggaagaacccgaaggcttttgcctttcagtcagctgcaaaggccaa 250

                                                                       
Query: 288 gcggctacaatctcgatcagcggaaattgaacaacgccgtctccatgtgccaatcgtgga 347
           ||| |||||| | ||||| || || ||||||||||| ||||| |||||||||||  ||||
Sbjct: 251 gcgtctacaagcacgatcggctgagattgaacaacgtcgtcttcatgtgccaattatgga 310

                                                                       
Query: 348 tcgctcaattggggaaccacctccttttgttgtcgtagtccaaggacctccgcaggttgg 407
           |||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct: 311 tcgctcaattggtgaaccaccaccttttgttgttgtagttcaagggcctcctcaggttgg 370

                                                           
Query: 408 aaagtcgctgctgataaggtgtctagtaaagcactacactaaacaaaa 455
            ||||||||||||||||  |||||||||||||||||||| ||||||||
Sbjct: 371 gaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaa 418
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 3e-23
 Identities = 128/151 (84%)
 Strand = Plus / Plus

                                                                            
Query: 254      aggcttttgccttccgttcagcaacaaaagcgaagcggctacaatctcgatcagcggaaa 313
                ||||||||||||| |  |||||  |||| || ||||| |||||| | ||||| || || |
Sbjct: 12271184 aggcttttgcctttcagtcagctgcaaaggccaagcgtctacaagcacgatcggctgaga 12271243

                                                                            
Query: 314      ttgaacaacgccgtctccatgtgccaatcgtggatcgctcaattggggaaccacctcctt 373
                |||||||||| ||||| |||||||||||  |||||||||||||||| |||||||| ||||
Sbjct: 12271244 ttgaacaacgtcgtcttcatgtgccaattatggatcgctcaattggtgaaccaccacctt 12271303

                                               
Query: 374      ttgttgtcgtagtccaaggacctccgcaggt 404
                ||||||| ||||| ||||| ||||| |||||
Sbjct: 12271304 ttgttgttgtagttcaagggcctcctcaggt 12271334



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 400      caggttggaaagtcgctgctgataaggtgtctagtaaagcactacactaaacaaaa 455
                |||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||
Sbjct: 12271397 caggttgggaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaa 12271452



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 74/89 (83%), Gaps = 6/89 (6%)
 Strand = Plus / Plus

                                                                            
Query: 174      caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 227
                |||||| |||||||||||| ||||||||||||| |||||      || || |||||| ||
Sbjct: 12270332 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 12270391

                                             
Query: 228      tgaagggggcgagaggaagaaccccaagg 256
                ||| || ||||||||||||||||| ||||
Sbjct: 12270392 tgacggtggcgagaggaagaacccgaagg 12270420



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 177      gtcgggcgcgaaggcgcggaaga 199
                |||||||||||||||||||||||
Sbjct: 35125133 gtcgggcgcgaaggcgcggaaga 35125155
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 3e-23
 Identities = 128/151 (84%)
 Strand = Plus / Plus

                                                                            
Query: 254      aggcttttgccttccgttcagcaacaaaagcgaagcggctacaatctcgatcagcggaaa 313
                ||||||||||||| |  |||||  |||| || ||||| |||||| | ||||| || || |
Sbjct: 12267947 aggcttttgcctttcagtcagctgcaaaggccaagcgtctacaagcacgatcggctgaga 12268006

                                                                            
Query: 314      ttgaacaacgccgtctccatgtgccaatcgtggatcgctcaattggggaaccacctcctt 373
                |||||||||| ||||| |||||||||||  |||||||||||||||| |||||||| ||||
Sbjct: 12268007 ttgaacaacgtcgtcttcatgtgccaattatggatcgctcaattggtgaaccaccacctt 12268066

                                               
Query: 374      ttgttgtcgtagtccaaggacctccgcaggt 404
                ||||||| ||||| ||||| ||||| |||||
Sbjct: 12268067 ttgttgttgtagttcaagggcctcctcaggt 12268097



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 400      caggttggaaagtcgctgctgataaggtgtctagtaaagcactacactaaacaaaa 455
                |||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||
Sbjct: 12268160 caggttgggaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaa 12268215



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 74/89 (83%), Gaps = 6/89 (6%)
 Strand = Plus / Plus

                                                                            
Query: 174      caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 227
                |||||| |||||||||||| ||||||||||||| |||||      || || |||||| ||
Sbjct: 12267095 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 12267154

                                             
Query: 228      tgaagggggcgagaggaagaaccccaagg 256
                ||| || ||||||||||||||||| ||||
Sbjct: 12267155 tgacggtggcgagaggaagaacccgaagg 12267183



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 177      gtcgggcgcgaaggcgcggaaga 199
                |||||||||||||||||||||||
Sbjct: 35215205 gtcgggcgcgaaggcgcggaaga 35215227
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score =  117 bits (59), Expect = 3e-23
 Identities = 128/151 (84%)
 Strand = Plus / Plus

                                                                         
Query: 254   aggcttttgccttccgttcagcaacaaaagcgaagcggctacaatctcgatcagcggaaa 313
             ||||||||||||| |  |||||  |||| || ||||| |||||| | ||||| || || |
Sbjct: 40717 aggcttttgcctttcagtcagctgcaaaggccaagcgtctacaagcacgatcggctgaga 40776

                                                                         
Query: 314   ttgaacaacgccgtctccatgtgccaatcgtggatcgctcaattggggaaccacctcctt 373
             |||||||||| ||||| |||||||||||  |||||||||||||||| |||||||| ||||
Sbjct: 40777 ttgaacaacgtcgtcttcatgtgccaattatggatcgctcaattggtgaaccaccacctt 40836

                                            
Query: 374   ttgttgtcgtagtccaaggacctccgcaggt 404
             ||||||| ||||| ||||| ||||| |||||
Sbjct: 40837 ttgttgttgtagttcaagggcctcctcaggt 40867



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 400   caggttggaaagtcgctgctgataaggtgtctagtaaagcactacactaaacaaaa 455
             |||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||
Sbjct: 40930 caggttgggaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaa 40985



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 74/89 (83%), Gaps = 6/89 (6%)
 Strand = Plus / Plus

                                                                         
Query: 174   caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 227
             |||||| |||||||||||| ||||||||||||| |||||      || || |||||| ||
Sbjct: 39865 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 39924

                                          
Query: 228   tgaagggggcgagaggaagaaccccaagg 256
             ||| || ||||||||||||||||| ||||
Sbjct: 39925 tgacggtggcgagaggaagaacccgaagg 39953
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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
              sequence
          Length = 130272

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 177    gtcgggcgcgaaggcgcggaaga 199
              |||||||||||||||||||||||
Sbjct: 126034 gtcgggcgcgaaggcgcggaaga 126056
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence,
            complete sequence
          Length = 156606

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 177  gtcgggcgcgaaggcgcggaaga 199
            |||||||||||||||||||||||
Sbjct: 3894 gtcgggcgcgaaggcgcggaaga 3916
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>ref|XM_757278.1| Ustilago maydis 521 hypothetical protein (UM06224.1) partial mRNA
          Length = 3678

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 195 gaagaagaagggcaagggcgccg 217
           |||||||||||||||||||||||
Sbjct: 849 gaagaagaagggcaagggcgccg 871
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>dbj|AK107425.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-F11, full
            insert sequence
          Length = 1453

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 177  gtcgggcgcgaaggcgcggaaga 199
            |||||||||||||||||||||||
Sbjct: 1080 gtcgggcgcgaaggcgcggaaga 1058
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 211    ggcgccgccggcgatgatgaagg 233
              |||||||||||||||||||||||
Sbjct: 859519 ggcgccgccggcgatgatgaagg 859541
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>ref|XM_471722.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 978

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 129 gggggaagccggcgtcgagca 149
           |||||||||||||||||||||
Sbjct: 143 gggggaagccggcgtcgagca 163
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>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
              complete sequence
          Length = 164709

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    agaagggcaagggcgccgccg 220
              |||||||||||||||||||||
Sbjct: 153818 agaagggcaagggcgccgccg 153838
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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0542B04, complete sequence
          Length = 182823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   gggggaagccggcgtcgagca 149
             |||||||||||||||||||||
Sbjct: 94078 gggggaagccggcgtcgagca 94098
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>ref|XM_322859.1| Neurospora crassa OR74A predicted protein (NCU10002.1) partial mRNA
          Length = 3162

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 aggcgcggaagaagaagggca 208
           |||||||||||||||||||||
Sbjct: 287 aggcgcggaagaagaagggca 307
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>ref|XM_953024.1| Neurospora crassa OR74A hypothetical protein (NCU10002.1) partial
           mRNA
          Length = 3162

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 aggcgcggaagaagaagggca 208
           |||||||||||||||||||||
Sbjct: 287 aggcgcggaagaagaagggca 307
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>gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome 5, complete sequence
          Length = 206926

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     ccctccactctcctcctttcc 54
              |||||||||||||||||||||
Sbjct: 205117 ccctccactctcctcctttcc 205097
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>gb|AE005849.1| Caulobacter crescentus CB15 section 175 of 359 of the complete genome
          Length = 14878

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 131  gggaagccggcgtcgagcagc 151
            |||||||||||||||||||||
Sbjct: 2561 gggaagccggcgtcgagcagc 2581
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 212     gcgccgccggcgatgatgaag 232
               |||||||||||||||||||||
Sbjct: 2812276 gcgccgccggcgatgatgaag 2812296
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 133     gaagccggcgtcgagcagccg 153
               |||||||||||||||||||||
Sbjct: 3423711 gaagccggcgtcgagcagccg 3423731
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 129      gggggaagccggcgtcgagca 149
                |||||||||||||||||||||
Sbjct: 13743186 gggggaagccggcgtcgagca 13743166
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 129      gggggaagccggcgtcgagca 149
                |||||||||||||||||||||
Sbjct: 20249482 gggggaagccggcgtcgagca 20249502
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 200      agaagggcaagggcgccgccg 220
                |||||||||||||||||||||
Sbjct: 18986440 agaagggcaagggcgccgccg 18986460
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>gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete
            genome
          Length = 16268

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  gggggaagccggcgtcgagca 149
            |||||||||||||||||||||
Sbjct: 6270 gggggaagccggcgtcgagca 6250
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>dbj|AK100039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151D13, full
           insert sequence
          Length = 1612

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 agaagggcaagggcgccgccg 220
           |||||||||||||||||||||
Sbjct: 191 agaagggcaagggcgccgccg 211
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>dbj|AK099875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111H01, full
           insert sequence
          Length = 1533

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 agaagggcaagggcgccgccg 220
           |||||||||||||||||||||
Sbjct: 214 agaagggcaagggcgccgccg 234
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>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence
          Length = 185363

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   ccctccactctcctcctttcc 54
            |||||||||||||||||||||
Sbjct: 9553 ccctccactctcctcctttcc 9533
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>dbj|AK061132.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A07, full
           insert sequence
          Length = 1423

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 129 gggggaagccggcgtcgagca 149
           |||||||||||||||||||||
Sbjct: 439 gggggaagccggcgtcgagca 459
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>dbj|AK059594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D08, full
           insert sequence
          Length = 1442

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 agaagggcaagggcgccgccg 220
           |||||||||||||||||||||
Sbjct: 256 agaagggcaagggcgccgccg 276
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 129      gggggaagccggcgtcgagca 149
                |||||||||||||||||||||
Sbjct: 20559805 gggggaagccggcgtcgagca 20559825
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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
              complete sequence
          Length = 187359

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    gggggaagccggcgtcgagca 149
              |||||||||||||||||||||
Sbjct: 137794 gggggaagccggcgtcgagca 137774
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>gb|AY619724.1| Antheraea pernyi nucleopolyhedrovirus p87, HE65, and PNK\PNL genes,
           complete cds; and unknown genes
          Length = 7406

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 268 cgttcagcaacaaaagcgaagcgg 291
           ||||||||||| ||||||||||||
Sbjct: 446 cgttcagcaacgaaagcgaagcgg 469
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus
              region
          Length = 160897

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 188    aggcgcggaagaagaagggcaagg 211
              ||||||||||||||||||| ||||
Sbjct: 124755 aggcgcggaagaagaaggggaagg 124778
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      tcctttccggcggccatccc 66
               ||||||||||||||||||||
Sbjct: 1763328 tcctttccggcggccatccc 1763347
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>gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, complete sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   aaagcactacactaaacaaa 454
             ||||||||||||||||||||
Sbjct: 63684 aaagcactacactaaacaaa 63665
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>gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence
          Length = 100828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   gggggaagccggcgtcgagcagcc 152
             |||||| |||||||||||||||||
Sbjct: 51523 gggggatgccggcgtcgagcagcc 51500
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>gb|DQ486030.1| Antheraea pernyi nucleopolyhedrovirus, complete genome
          Length = 126479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   cgttcagcaacaaaagcgaagcgg 291
             ||||||||||| ||||||||||||
Sbjct: 48684 cgttcagcaacgaaagcgaagcgg 48661
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>ref|XM_323700.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial
           mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 244 aagaaccccaaggcttttgccttc 267
           |||||||||||||| |||||||||
Sbjct: 82  aagaaccccaaggcctttgccttc 105
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>ref|XM_951236.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial
           mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 244 aagaaccccaaggcttttgccttc 267
           |||||||||||||| |||||||||
Sbjct: 82  aagaaccccaaggcctttgccttc 105
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>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence
          Length = 137052

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gaagaagaagggcaagggcgccgc 218
             |||||||||||||||||| |||||
Sbjct: 56134 gaagaagaagggcaagggtgccgc 56157
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>ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02793.1)
            partial mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  gaagaagaagggcaagggcg 214
            ||||||||||||||||||||
Sbjct: 1596 gaagaagaagggcaagggcg 1615
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 169    gtggccaagtcgggcgcgaaggcg 192
              |||||||||||||| |||||||||
Sbjct: 231552 gtggccaagtcgggggcgaaggcg 231575
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>gb|DQ428095.1| Sorghum bicolor voucher PI585454 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428094.1| Sorghum bicolor voucher PI267539 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428093.1| Sorghum bicolor voucher PI267408 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428092.1| Sorghum bicolor voucher PI152702 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428091.1| Sorghum bicolor voucher NSL92371 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428090.1| Sorghum bicolor voucher NSL87666 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428089.1| Sorghum bicolor voucher NSL56174 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428088.1| Sorghum bicolor voucher NSL56003 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428087.1| Sorghum bicolor voucher NSL55243 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428086.1| Sorghum bicolor voucher NSL51365 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428085.1| Sorghum bicolor voucher NSL51030 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|DQ428084.1| Sorghum bicolor voucher NSL50875 locus PRC0162 genomic sequence
          Length = 797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aagaagggcaagggcgccgc 218
           ||||||||||||||||||||
Sbjct: 628 aagaagggcaagggcgccgc 647
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>gb|AC117578.9| Mus musculus chromosome 5, clone RP23-36I22, complete sequence
          Length = 213371

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   aaagcactacactaaacaaa 454
             ||||||||||||||||||||
Sbjct: 83080 aaagcactacactaaacaaa 83099
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  ggaagaagaagggcaagggc 213
            ||||||||||||||||||||
Sbjct: 2731 ggaagaagaagggcaagggc 2750
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>gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, complete sequence
          Length = 183330

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    ccctcgccctccactctcctcctt 51
             |||||||||||| |||||||||||
Sbjct: 23091 ccctcgccctcccctctcctcctt 23114
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     ggcgccgccggcgatgatga 230
               ||||||||||||||||||||
Sbjct: 2704315 ggcgccgccggcgatgatga 2704296
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>gb|AY104032.1| Zea mays PCO099184 mRNA sequence
          Length = 1242

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  gcctccgcaaaaccctcctc 117
           ||||||||||||||||||||
Sbjct: 7   gcctccgcaaaaccctcctc 26
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>gb|AC130103.4| Rattus norvegicus  BAC CH230-41L20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224716

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cctccactctcctcctttcc 54
              ||||||||||||||||||||
Sbjct: 110683 cctccactctcctcctttcc 110664


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,410,681
Number of Sequences: 3902068
Number of extensions: 3410681
Number of successful extensions: 97791
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96955
Number of HSP's gapped (non-prelim): 836
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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