ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl13c05 |
|---|---|
| Clone Library Name | barley_pub |
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 100 bits (249), Expect = 2e-21 Identities = 47/74 (63%), Positives = 54/74 (72%) Frame = +1 Query: 217 MAANRGMVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAC 396 M A+ G+VAGS+ RNE V IR + D K +K GQ CQICGD VG++ TGDVFVAC Sbjct: 1 MEASAGLVAGSYRRNELVRIRHESDGGT--KPLKNMNGQICQICGDDVGLAETGDVFVAC 58 Query: 397 NECALPVCRPCYEY 438 NECA PVCRPCYEY Sbjct: 59 NECAFPVCRPCYEY 72
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 92.8 bits (229), Expect = 3e-19 Identities = 42/74 (56%), Positives = 53/74 (71%) Frame = +1 Query: 217 MAANRGMVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAC 396 M A+ G+VAGSHNRNE V+I + + P P +K GQ C+ICGD +G++ GD+FVAC Sbjct: 1 MEASAGLVAGSHNRNELVVIH-NHEEPKP---LKNLDGQFCEICGDQIGLTVEGDLFVAC 56 Query: 397 NECALPVCRPCYEY 438 NEC P CRPCYEY Sbjct: 57 NECGFPACRPCYEY 70
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 91.7 bits (226), Expect = 7e-19 Identities = 41/68 (60%), Positives = 49/68 (72%) Frame = +1 Query: 235 MVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVACNECALP 414 ++AGSHNRNEFV+I D A + V+ GQ CQICGD + +S G+ FVACNECA P Sbjct: 7 LIAGSHNRNEFVLINADESARI--RSVEELSGQTCQICGDEIELSVDGESFVACNECAFP 64 Query: 415 VCRPCYEY 438 VCRPCYEY Sbjct: 65 VCRPCYEY 72
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 90.1 bits (222), Expect = 2e-18 Identities = 39/68 (57%), Positives = 50/68 (73%) Frame = +1 Query: 235 MVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVACNECALP 414 ++AGSHNRNEFV+I D A + V+ GQ CQICGD + ++ + ++FVACNECA P Sbjct: 7 LIAGSHNRNEFVLINADESARI--RSVQELSGQTCQICGDEIELTVSSELFVACNECAFP 64 Query: 415 VCRPCYEY 438 VCRPCYEY Sbjct: 65 VCRPCYEY 72
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 87.8 bits (216), Expect = 1e-17 Identities = 39/68 (57%), Positives = 49/68 (72%) Frame = +1 Query: 235 MVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVACNECALP 414 ++AGSHNRNEFV+I D +A + V+ GQ CQIC D + ++ G+ FVACNECA P Sbjct: 7 LIAGSHNRNEFVLINADENARI--RSVQELSGQTCQICRDEIELTVDGEPFVACNECAFP 64 Query: 415 VCRPCYEY 438 VCRPCYEY Sbjct: 65 VCRPCYEY 72
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 83.6 bits (205), Expect = 2e-16 Identities = 40/68 (58%), Positives = 47/68 (69%) Frame = +1 Query: 235 MVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVACNECALP 414 MVAGS+ R EFV R D D K +K GQ CQICGD VG++ TG+VFVACNEC P Sbjct: 1 MVAGSYRRYEFVRNRDDSDDGL--KPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFP 58 Query: 415 VCRPCYEY 438 +C+ CYEY Sbjct: 59 LCQSCYEY 66
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 82.0 bits (201), Expect = 6e-16 Identities = 35/68 (51%), Positives = 46/68 (67%) Frame = +1 Query: 235 MVAGSHNRNEFVMIRXDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVACNECALP 414 ++AGSHNRNEFV+I D A + + GQ C+IC D + ++ G+ F+ACNECA P Sbjct: 7 LIAGSHNRNEFVLINADDTARI--RSAEELSGQTCKICRDEIELTDNGEPFIACNECAFP 64 Query: 415 VCRPCYEY 438 CRPCYEY Sbjct: 65 TCRPCYEY 72
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 64.7 bits (156), Expect = 1e-10 Identities = 27/52 (51%), Positives = 33/52 (63%) Frame = +1 Query: 283 DGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVACNECALPVCRPCYEY 438 + + GK +K Q CQIC D VG + GD FVAC+ C+ PVCRPCYEY Sbjct: 2 ESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEY 53
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 52.4 bits (124), Expect = 5e-07 Identities = 17/34 (50%), Positives = 25/34 (73%) Frame = +1 Query: 337 CQICGDTVGVSATGDVFVACNECALPVCRPCYEY 438 C CG+ +GV + G+ FVAC+EC+ P+C+ C EY Sbjct: 9 CNTCGEEIGVKSNGEFFVACHECSFPICKACLEY 42
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 52.0 bits (123), Expect = 6e-07 Identities = 19/34 (55%), Positives = 23/34 (67%) Frame = +1 Query: 337 CQICGDTVGVSATGDVFVACNECALPVCRPCYEY 438 C++CGD V G FVAC+ C PVC+PCYEY Sbjct: 23 CKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEY 56
>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)| Length = 684 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 307 KEVKGAGGQGCQICGDTVGVSATGDVFVACNECALPVCRPC 429 K V G G C +CG+ +G+ G V C +C VC C Sbjct: 84 KNVAGDGVNRCILCGEQLGM--LGSACVVCEDCKKNVCTKC 122 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 410 RAHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASP 285 RA+S+QA++ +P + P QP PP + PG G P Sbjct: 271 RANSVQASRPAPASMPSPAPPQPVQPGPPGGSRAAPGPGRFP 312
>RP3A_BOVIN (Q06846) Rabphilin-3A (Exophilin-1)| Length = 704 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 307 KEVKGAGGQGCQICGDTVGVSATGDVFVACNECALPVCRPC 429 K V G G C +CG+ +G+ G V C +C VC C Sbjct: 88 KNVAGDGVNRCILCGEQLGM--LGSACVVCEDCKKNVCTKC 126
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 307 KEVKGAGGQGCQICGDTVGVSATGDVFVACNECALPVCRPC 429 K V G G C +CG+ +G+ G V C +C VC C Sbjct: 84 KNVAGDGVNRCILCGEQLGM--LGSACVVCEDCKKNVCTKC 122 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -2 Query: 410 RAHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASP 285 RA+S+QA + +P P QP PP + PG G P Sbjct: 268 RANSVQAARPAPAPVPSPAPPQPVQPGPPGGSRATPGPGRFP 309
>RP3A_HUMAN (Q9Y2J0) Rabphilin-3A (Exophilin-1)| Length = 694 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 307 KEVKGAGGQGCQICGDTVGVSATGDVFVACNECALPVCRPC 429 K V G G C +CG+ +G+ G V C +C VC C Sbjct: 88 KNVAGDGVNRCILCGEQLGM--LGSACVVCEDCKKNVCTKC 126
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/67 (29%), Positives = 25/67 (37%) Frame = -2 Query: 389 TKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRIMTNSLRLCDPATIPRLAAIFR 210 T SP T T P P PP T+ P +PS I T + L P ++ Sbjct: 1404 TTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPPISTTTT 1463 Query: 209 SPAALTP 189 P TP Sbjct: 1464 PPPTTTP 1470
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = -2 Query: 362 PTVSPHIWQP*PPAPFTSLPGAGASPSXRIMTNSLRLCDPATIPRLAAIFRSPAALTPH 186 P+ +P I P PP PFT PG P T P T+P + P+ PH Sbjct: 849 PSQAPGILTPPPPYPFTPQPGVLGQPPPTRHTQLYPGPPPDTLPPHSGALPFPSPGPPH 907
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 27.7 bits (60), Expect(2) = 2.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 252 VRPRDHPPVGRHLSLPRRPHTPPAAVTKA 166 +RP+ PP G LP PH PP++ + A Sbjct: 811 LRPQSQPPEG---PLPPAPHLPPSSTSSA 836 Score = 21.2 bits (43), Expect(2) = 2.0 Identities = 13/41 (31%), Positives = 15/41 (36%) Frame = -2 Query: 353 SPHIWQP*PPAPFTSLPGAGASPSXRIMTNSLRLCDPATIP 231 SPH+ P P P + P S S L C P P Sbjct: 737 SPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPPQAP 777
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 416 TGRAHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLP-GAGASPSXRIMTNS 261 T ++ SL AT T + P P + PAPFTS P G GAS + I + S Sbjct: 312 TFQSPSLSAT-TQTIRIGPPPPPSVTNAPTPAPFTSTPSGGGASQTKSIYSKS 363
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 29.3 bits (64), Expect = 4.4 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = -2 Query: 404 HSLQATKTSPVAETPTVSPHIWQP*PP---APF-TSLPGAGASPSXRIMTNSLRLCDPAT 237 H + + K P A T T PH P PP AP LP A SPS ++S +P Sbjct: 247 HRIISPKVEPRALTLTSIPHPHPPEPPPLIAPLPPELPKAHTSPSSSSSSSSSGFAEPLE 306 Query: 236 I 234 I Sbjct: 307 I 307
>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 497 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/34 (35%), Positives = 13/34 (38%) Frame = -3 Query: 427 KGGRPEGRTHCRQQRHHRWPKRQQCHHISGSPDH 326 +G PE H HH P HH G P H Sbjct: 260 RGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHH 293
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/34 (35%), Positives = 13/34 (38%) Frame = -3 Query: 427 KGGRPEGRTHCRQQRHHRWPKRQQCHHISGSPDH 326 +G PE H HH P HH G P H Sbjct: 258 RGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHH 291
>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 500 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/34 (35%), Positives = 13/34 (38%) Frame = -3 Query: 427 KGGRPEGRTHCRQQRHHRWPKRQQCHHISGSPDH 326 +G PE H HH P HH G P H Sbjct: 261 RGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHH 294
>AL_DROME (Q06453) Homeobox protein aristaless| Length = 408 Score = 29.3 bits (64), Expect = 4.4 Identities = 20/53 (37%), Positives = 26/53 (49%) Frame = -2 Query: 416 TGRAHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRIMTNSL 258 T +A SL T+TSPVA T + SP P P P A+P T+S+ Sbjct: 328 TQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATPPEDRRTSSI 380
>ACCN3_HUMAN (Q9UHC3) Amiloride-sensitive cation channel 3 (Acid-sensing ion| channel 3) (ASIC3) (hASIC3) (Testis sodium channel 1) (hTNaC1) Length = 531 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -1 Query: 219 HLSLPRRPHTPPAAVTK 169 HLSL RP TPP AVTK Sbjct: 500 HLSLGPRPPTPPCAVTK 516
>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) Length = 727 Score = 28.9 bits (63), Expect = 5.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -2 Query: 374 VAETPTVSPHIWQP*PPAPFTSLPGAGASPS 282 V T ++ P ++QP P + ++ PGA SP+ Sbjct: 397 VVTTASIRPSVYQPVPASTYSPSPGANYSPT 427
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 28.9 bits (63), Expect = 5.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -2 Query: 374 VAETPTVSPHIWQP*PPAPFTSLPGAGASPS 282 V T ++ P ++QP P + ++ PGA SP+ Sbjct: 393 VVTTASIRPSVYQPVPASSYSPSPGANYSPT 423
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 389 TKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRI 273 T+T +++ PT SP P PP+P T G SPS + Sbjct: 691 TETESISKNPTKSP----PPPPSPSTMDTGTSNSPSKNL 725
>OXR1_ASPFU (Q4WX99) Oxidation resistance protein 1| Length = 324 Score = 28.9 bits (63), Expect = 5.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 422 RQTGRAHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRIMTNSL----R 255 R+ ++ ++ TSP P + +QP P P T PG G P +++T +L R Sbjct: 77 RKMNARNNRDSSTTSPDIFVPIRTASPFQPPPLTPLTLTPGPGV-PQQQLLTRALAEEIR 135 Query: 254 LCDPATI 234 L PA + Sbjct: 136 LLVPARL 142
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 28.5 bits (62), Expect = 7.6 Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Frame = -2 Query: 401 SLQATKTSPVAETPTVSPHIW------------QP*PPAPFTSLP-GAGASPSXRIMTNS 261 S A KT P PT P Q PP P T P GA A+P+ + Sbjct: 440 SASAAKTPPTTPAPTTPPPTSTHATPRPTTPGPQTTPPGPATPGPVGASAAPTA---DSP 496 Query: 260 LRLCDPATIPRLAAIFRSPAALT 192 L PAT P +A S AA T Sbjct: 497 LTASPPATAPGPSAANVSVAATT 519
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.5 bits (62), Expect = 7.6 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -1 Query: 252 VRPRDHPPVGRHLSLPRRPHTP 187 + P+ PP G+H++ PR P P Sbjct: 2282 IAPQSRPPEGKHITTPREPLPP 2303
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 28.5 bits (62), Expect = 7.6 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -2 Query: 407 AHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRI-MTNSLRLCDPATIP 231 AH +QA ++ TPT +P IW P AP L A A+ S I +T+ RL Sbjct: 756 AHRVQAAASA----TPTPTPVIWTPLIQAP---LQAAAATTSVAIALTHHPRL------- 801 Query: 230 RLAAIFRSP 204 AAIFR P Sbjct: 802 -PAAIFRPP 809
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 28.5 bits (62), Expect = 7.6 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -2 Query: 407 AHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRI-MTNSLRLCDPATIP 231 AH +QA ++ TPT +P IW P AP L A A+ S I +T+ RL Sbjct: 741 AHRVQAAASA----TPTPTPVIWTPLIQAP---LQAAAATTSVAIALTHHPRL------- 786 Query: 230 RLAAIFRSP 204 AAIFR P Sbjct: 787 -PAAIFRPP 794
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 28.5 bits (62), Expect = 7.6 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -2 Query: 407 AHSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRI-MTNSLRLCDPATIP 231 AH +QA ++ TPT +P IW P AP L A A+ S I +T+ RL Sbjct: 756 AHRVQAAASA----TPTPTPVIWTPLIQAP---LQAAAATTSVAIALTHHPRL------- 801 Query: 230 RLAAIFRSP 204 AAIFR P Sbjct: 802 -PAAIFRPP 809
>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1839 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Frame = -2 Query: 392 ATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRIMTNSLRLCDPATIPRLAAIF 213 +T +SP + PT+SPH+ P P T P SP CD A +P AA+ Sbjct: 600 STSSSPPLQEPTLSPHLIHP----PLTREP----SPLNGC------ACDSALLPSTAAMT 645 Query: 212 RS--PAALTP 189 + P L P Sbjct: 646 SAEHPTPLNP 655
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/73 (31%), Positives = 26/73 (35%) Frame = -2 Query: 404 HSLQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSXRIMTNSLRLCDPATIPRL 225 H T T P TPT PH P P T P +P + SL L P+ P Sbjct: 29 HPHTPTHTHPHTPTPTPHPHPHTPHPHTTPTPTPHHTHTPHTTLSNLSLNL--PSHYP-- 84 Query: 224 AAIFRSPAALTPH 186 SP PH Sbjct: 85 ----TSPLVTLPH 93
>YTUB_ENTAG (Q47826) Hypothetical protein in tutB 3'region (Fragment)| Length = 204 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -1 Query: 243 RDHPPVGRHLSLPRRPHTPPAAVTKA 166 RDHP + L+ P +PH+ P + +A Sbjct: 140 RDHPLIVADLAQPHQPHSAPGIIVEA 165
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 13/74 (17%) Frame = -2 Query: 407 AHSLQATKTSPVAETPTVSPHIWQ------------P*PPAPFTSLPGAGASPS-XRIMT 267 A SL + SP P+ P + P PPA +PGAG +P + Sbjct: 1049 ASSLSSVTQSPGHPGPSAGPALANSTGSKPNVETEPPAPPAALLKVPGAGTAPKPVSVAC 1108 Query: 266 NSLRLCDPATIPRL 225 L P PRL Sbjct: 1109 TQLAFSGPKLAPRL 1122
>REV_HV1B8 (P05864) REV protein (Anti-repression transactivator protein)| (ART/TRS) (Fragment) Length = 106 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -3 Query: 418 RPEGRTHCRQQRHHRWPKRQ-QCHHIS 341 +PEG R+ R RW +RQ Q H IS Sbjct: 20 KPEGTRQARRNRRRRWRERQRQIHSIS 46 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,337,508 Number of Sequences: 219361 Number of extensions: 854459 Number of successful extensions: 3447 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3431 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
