>Y1043_HAEIN (P44101) Hypothetical protein HI1043|
          Length = 166

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 119 HLGHHFPLKSHLLRHALPA--ASLASTQIRPQIGAGRAVSWAIC 244
           +L HH   +  LLRH  PA  +++  TQ RP   A   +  A+C
Sbjct: 10  YLSHHHISRRGLLRHVFPATKSTIEKTQSRPPFSAREDLFSAVC 53

>COLA_VIBAL (P43154) Microbial collagenase precursor (EC 3.4.24.3)|
          Length = 814

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -2

Query: 214 ADLGADLRAGERSGGQRVAEEVRFEGKVVAEVASGKKGRGERFRDYGRGIKVGLPATATA 35
           + +GA+      + G+ +    ++ G   + V S      E++  YGRG  V L A  TA
Sbjct: 278 SSIGAEDEFMAANAGRELGRLTKYTGNASSVVKSQLSRIFEQYEMYGRGDAVWLAAADTA 337

Query: 34  TYSARLS 14
           +Y A  S
Sbjct: 338 SYYADCS 344

>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +3

Query: 117 ATSATTFPSNLTSSATRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQATA 272
           A+ A T P    S A   PP  SPAR S  R+ P     GRS S      T+
Sbjct: 41  ASPARTPPQ--ASPARAPPPQASPARASPARAPPSRSSSGRSSSARSASTTS 90

>LUZP1_HUMAN (Q86V48) Leucine zipper protein 1|
          Length = 1076

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 138 PSNLTSSATRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQ 263
           P+ +TSS T     + P+  S+PR+APGE    R  S    Q
Sbjct: 789 PNKVTSSIT-----IYPSDSSSPRAAPGEALRERHTSTSNIQ 825

>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)|
          Length = 1577

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = +3

Query: 123  SATTFPSNLTSSATRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQATA 272
            SA+  PSN  SS +RCP    P   S PRS          V+RD  Q TA
Sbjct: 1419 SASLNPSNSESSPSRCPS--DPDSTSQPRSG-----DSADVARDVKQPTA 1461

>SIF1_DROME (P91621) Protein still life, isoform SIF type 1|
          Length = 2072

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 289 LGGPLMAVACVSSRLTDRP*NGSPGADLGADLRAGERSGGQRVAEEVRFEG 137
           +G   +  A  S+ L D   +G PG + GAD    +  GGQ+  ++V   G
Sbjct: 229 VGSGKVVSAVSSTSLYDNVASGGPGTNQGADTLPRQMKGGQQDRQDVANSG 279

>CYLD_MOUSE (Q80TQ2) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC|
           3.1.2.15) (Ubiquitin thioesterase CYLD) (Ubiquitin
           specific-processing protease CYLD) (Deubiquitinating
           enzyme CYLD)
          Length = 952

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
 Frame = -2

Query: 211 DLGADLRAGERSGGQRVAEEVRFEGKVVAE-VASG--------KKGRGERFRD 80
           D+G+ ++   RSG ++    VRF G ++AE   SG        ++GRG+ F D
Sbjct: 126 DVGSPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTD 178

>MCF2L_RAT (Q63406) Guanine nucleotide exchange factor DBS (DBL's big sister)|
            (MCF2 transforming sequence-like protein) (OST oncogene)
            (Fragment)
          Length = 937

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -2

Query: 280  PLMAVACVSSRLTDRP*NGSPGADLGADLRAGERSGGQRVAEEV 149
            PL    CVSS L   P  G   +     L A E  GG   AEE+
Sbjct: 870  PLCLEGCVSSSLPKPPEKGKGWSKTSHSLEAPEEDGGWSSAEEL 913

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 183 SPARKSAPRSAPGEPFHGRSVSRDET 260
           SP  +S PRS P      RS+SRD T
Sbjct: 817 SPGSRSRPRSRPRSRSRSRSLSRDRT 842

>MSN2_YEAST (P33748) Zinc finger protein MSN2 (Multicopy suppressor of SNF1|
           protein 2)
          Length = 704

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 65  NAAPVVPKPLSPSFLP*RHLGHHFPLKSHLLRHALPAASL 184
           N AP+ P   S + L   H  HHFP + H   ++   +SL
Sbjct: 538 NMAPLSPASSSSTSLATNHFYHHFPQQGHHTMNSKIGSSL 577

>CYLD_HUMAN (Q9NQC7) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC|
           3.1.2.15) (Ubiquitin thioesterase CYLD)
           (Ubiquitin-specific-processing protease CYLD)
           (Deubiquitinating enzyme CYLD)
          Length = 956

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
 Frame = -2

Query: 211 DLGADLRAGERSGGQRVAEEVRFEGKVVAE-VASG--------KKGRGERFRD 80
           D+G  ++   RSG ++    VRF G ++AE   SG        ++GRG+ F D
Sbjct: 126 DVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTD 178

>ESR1_SPAAU (Q9PVZ9) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)|
          Length = 579

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 329 DKRRGGQEEQERASRGPSHGSSLRFVAAHRSPMKRLSRRRSGGG 198
           DKRR G  ++++AS+G  H +     A  +   K +S    GGG
Sbjct: 224 DKRRTGTSDRDKASKGLEHRT-----APPQDRRKHISSSAGGGG 262

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 162 TRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQA 266
           T  PP L P     P   P EP H   V    TQA
Sbjct: 527 TPTPPALPPTPTPTPEKDPEEPAHAPPVQSAPTQA 561

>CACB2_RABIT (P54288) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 632

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +3

Query: 114 DATSATTFPSNLTSSATRCPPLLSPARKSAPRSAPGEPFH------GRSVSRDET 260
           D  +  + P+   S A    P L PA+KS  RS+   P H       R +SR ET
Sbjct: 473 DQRTDRSAPARSASQAEE-EPCLEPAKKSQHRSSSSAPHHNHRSGTSRGLSRQET 526

>ARCC_PSEAE (P13982) Carbamate kinase (EC 2.7.2.2)|
          Length = 310

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -2

Query: 196 LRAGERSGGQRVAEEVRFEGKVVAEVASGKKGRGERFRDYGRGIKVGLPATATATY 29
           LR GE        E VR   + +A+VA G     E    +G G +VGL A   A Y
Sbjct: 13  LRRGEPMTADNQRENVRIAAEQIAKVAPGN----ELVIAHGNGPQVGLLALQGAAY 64

>ERMU_BACFR (Q02607) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
          Length = 266

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 107 LP*RHLGHHFPLKSHLLRHALPAASLASTQIRPQIGAGR 223
           LP R  G HF +   L++ A+  A++++      IGAG+
Sbjct: 6   LPLRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGK 44

>ERMF_BACFR (P10337) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
          Length = 266

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 107 LP*RHLGHHFPLKSHLLRHALPAASLASTQIRPQIGAGR 223
           LP R  G HF +   L++ A+  A++++      IGAG+
Sbjct: 6   LPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGK 44

>DCUP_TOBAC (Q42967) Uroporphyrinogen decarboxylase, chloroplast precursor (EC|
           4.1.1.37) (URO-D) (UPD)
          Length = 391

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
 Frame = -2

Query: 292 HLGGPLMAVACVSSRLTDR-P*NGSPGADLGADLRAGERSGGQRVAEEVRFEGKVVAEVA 116
           H   PL+  A  S  L +R P  G     L  D       G +R+   V  +G V   V 
Sbjct: 282 HPNLPLILYASGSGGLLERLPLTGVDVVSL--DWTVDMADGRRRLGPNVAIQGNVDPGVL 339

Query: 115 SGKK--------------GRGERFRDYGRGIKVGLP 50
            G K              G+G+   + G GIKVG P
Sbjct: 340 FGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTP 375

>GLND_AZOSE (Q5NZH8) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 862

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = -2

Query: 130 VAEVASGKKGRGERFRDYGRGIKVGLPATATATYSARLSLRL 5
           VA +A G  GRGE F      + V LP TA     ARLS+ L
Sbjct: 68  VALLAVGGYGRGELFPCSDVDLMVLLPDTADDAMQARLSVLL 109

>USP_MANSE (P54779) Protein ultraspiracle homolog|
          Length = 461

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 335 CGDKRRGGQEEQERASRG--PSHGSS 264
           CG KR   QEE++RA+RG   +H SS
Sbjct: 176 CGMKREAVQEERQRAARGTEDAHPSS 201

>FPG_SYMTH (Q67R59) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)|
           (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM)
          Length = 304

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 83  PKPLSPSFLP----*RHLGHHFPLKSHLLRHALPA 175
           P+PLSP F P     R  G H  +K+ LL  AL A
Sbjct: 134 PEPLSPEFTPQVLAERLAGRHTSIKAALLNQALVA 168

>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 332 GDKRRGGQEEQERAS--RGPSHGSSLRFVAAHRSPMKRLSR 216
           GD R G +EE+E       P +GS  RFV      +K L+R
Sbjct: 96  GDPREGEEEEEEDEPDPEAPENGSLPRFVPRFNFSLKDLTR 136

>CHS1_GERHY (P48390) Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone|
           synthase 1)
          Length = 398

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 108 RKEGERGFGTTGAALKWG 55
           +K  E G GTTG  L+WG
Sbjct: 354 KKSSENGAGTTGEGLEWG 371

>NG06_SCHPO (Q9URX8) Probable nucleoporin C890.06|
          Length = 1315

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 114 DATSATTFPSNLTSSATRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQ 263
           ++T ++T PS L  +  R PP +     ++ R+ P  PF  ++ S  + Q
Sbjct: 353 NSTLSSTPPSTLQLTFVRFPPPMQVENYASSRNYPANPFFLQNQSTSQQQ 402

>ACM5_HUMAN (P08912) Muscarinic acetylcholine receptor M5|
          Length = 532

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 120 TSATTFPSNLTSSATRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQAT 269
           T+ +++PS+         P+L    KS  + +PGE F     S +ET+ T
Sbjct: 301 TTCSSYPSSEDEDKPATDPVLQVVYKSQGKESPGEEF-----SAEETEET 345

>NCD_DROME (P20480) Protein claret segregational|
          Length = 700

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 138 PSNLTSSATRCPPLLSPARKSAPRSAPGEP 227
           PS++T++A + PP+  PA ++A  +A  +P
Sbjct: 142 PSSITATAVKRPPVTRPAPRAAGGAAAKKP 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,419,651
Number of Sequences: 219361
Number of extensions: 804687
Number of successful extensions: 3288
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3274
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)