>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 PALARGSVGPRSRGGIGPDPPGSG 244
           P  +RG  GP  RGG GP P G G
Sbjct: 338 PPGSRGGYGPPGRGGYGPGPNGRG 361

>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 1000

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 2  HPTQAPPHATQNPDPSASASPGIPSTVGR 88
          HPT+APPHA   P     A P  P +  R
Sbjct: 8  HPTRAPPHALPTPRAPPRAPPPSPRSARR 36

>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9|
          Length = 705

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +2

Query: 173 PALARGSVGP--RSRGGIGPDPPGSG 244
           P   RG  GP  R RGG GP P G G
Sbjct: 350 PQNGRGGYGPPGRGRGGYGPPPRGYG 375

>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 231 GSGPMPPRERGPTEPRASAGTHE 163
           G+GP+PP + GP  P A  G  E
Sbjct: 443 GAGPVPPGKVGPATPSAQVGKWE 465

>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing|
           protein)
          Length = 1104

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 5   PTQAPPHATQNPDPSASASPGIPSTVG 85
           PT  PP A   PDP +   P  P   G
Sbjct: 23  PTDQPPAAHAKPDPGSGGQPAGPGAAG 49

>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 246 RPDPGGSGPMPP-RERGPTEPRASAG 172
           R +PG SGPM P  +RGP  P   AG
Sbjct: 36  RGEPGDSGPMGPIGKRGPPGPAGIAG 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.116    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,344,246
Number of Sequences: 219361
Number of extensions: 233763
Number of successful extensions: 1791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)