>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 373

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 4   APAPSTLASSRSPNPDPPACHPTSPLA 84
           APAPS+ ASSRSP P P      +P A
Sbjct: 151 APAPSSFASSRSPAPAPAPARAAAPAA 177

>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)|
          Length = 731

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 116 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 6
           EQE     GER  GL G HAGG+G G      +D +G
Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138

>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)|
          Length = 485

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 7   PAPSTLASSRSPNPDPPACHPTSPLARSP 93
           P+P   ASSR P+P PP+  P SP   SP
Sbjct: 231 PSPQPTASSRPPSP-PPSPRPPSPPPPSP 258

>IGHA1_GORGO (P20758) Ig alpha-1 chain C region|
          Length = 353

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1   RAPA-PSTLASSRSPNPDPPACHPTSPLAR 87
           R P+ P T + S  P P PP CHP   L R
Sbjct: 102 RVPSTPPTPSPSTPPTPSPPCCHPRLSLHR 131

>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)|
          Length = 264

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = +1

Query: 7   PAPSTLASSRSPNPDPPAC------HPTSPLARSP 93
           PAP + AS+ SP+P PPAC      HP+S  ++ P
Sbjct: 100 PAPLSGASA-SPSPAPPACSQPAPDHPSSAASKQP 133

>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)|
          Length = 264

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +1

Query: 7   PAPSTLASSRSPNPDPPAC------HPTSPLARSP 93
           PAP +  +S SP+P PPAC      HP+S  ++ P
Sbjct: 100 PAPLS-GTSASPSPAPPACSQPAPDHPSSAASKQP 133

>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit) (DSIF p160) (Tat-cotransactivator 1 protein)
            (Tat-CT1 protein)
          Length = 1087

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 7    PAPSTLASSRSPNPDPPACHPTSPLARSP 93
            P PS +A   SP+P P    P +P A SP
Sbjct: 932  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 960

>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit)
          Length = 1083

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 7    PAPSTLASSRSPNPDPPACHPTSPLARSP 93
            P PS +A   SP+P P    P +P A SP
Sbjct: 928  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 956

>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit)
          Length = 1082

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 7    PAPSTLASSRSPNPDPPACHPTSPLARSP 93
            P PS +A   SP+P P    P +P A SP
Sbjct: 926  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 954

>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit) (Protein foggy)
          Length = 1084

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 7    PAPSTLASSRSPNPDPPACHPTSPLARSP 93
            P PS +A   SP+P P    P +P A SP
Sbjct: 930  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 958

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 1    RAPAPSTLASSRSPNPDPPACHPTSP 78
            R PA  T +S   P+P PPA  P +P
Sbjct: 2832 RNPAEPTSSSPAGPSPPPPAVQPVAP 2857

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +1

Query: 19  TLASSRSP----NPDPPACHPTSPLARSP 93
           TL  +++P    NP PP+ HP +PLA  P
Sbjct: 705 TLVPAKTPSIYANPTPPSSHPFTPLADDP 733

>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit)
          Length = 1079

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 7    PAPSTLASSRSPNPDPPACHPTSPLARSP 93
            P PS +A   SP+P P    P +P A SP
Sbjct: 924  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 952

>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144) (Zfp-144)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%)
 Frame = +1

Query: 1   RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 78
           +AP+P+TL   SS  P+P            PPA HPTSP
Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 4   APAPSTLASSRSPNPDPPACHPTSPLARSP 93
           +PAP +  S   P+P PP+  P SP   SP
Sbjct: 72  SPAPPSPPSPAPPSPAPPSPAPPSPAPPSP 101



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 4   APAPSTLASSRSPNPDPPACHPTSPLARSP 93
           +PAP +  S   P+P PPA  P SP+  SP
Sbjct: 222 SPAPPSPPSPAPPSPSPPA--PPSPVPPSP 249



 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 4   APAPSTLASSRSPNPDPPACHPTSPLARSP 93
           +PAP + A    P+P PP+  P +P + SP
Sbjct: 110 SPAPPSPAPPSPPSPAPPSPSPPAPPSPSP 139

>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144)
          Length = 344

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%)
 Frame = +1

Query: 1   RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 78
           +AP+P+TL   SS  P+P            PPA HPTSP
Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300

>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
          (Fragment)
          Length = 198

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 11 PRPHSRAPDPRTLTPPHAIP 70
          P P  R PDP +  PPHA P
Sbjct: 25 PDPTRRHPDPESRAPPHARP 44

>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 114

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 25  ASSRSPNPDPPACHPTSPL 81
           +SS SP+P PP  HP +P+
Sbjct: 45  SSSSSPSPGPPTKHPKTPM 63

>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2)
          Length = 889

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 1   RAPAPSTLASSRSPNPDPPACHPTSPLA-RSP 93
           R P P    ++ SP P PPA  P +P + R+P
Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPGAPASPRAP 790

>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 4   APAPSTLASSRSPNPDPPACHPTSPLARSP 93
           APAPS+  ++R+P+    A  P  P   SP
Sbjct: 206 APAPSSAPAARAPSSPSSAPRPARPAGASP 235

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 1   RAPAPSTLASSRSPNPDPPACH---PTSPLARSP 93
           R+P+P      RSP+P PP      P+ P  RSP
Sbjct: 542 RSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSP 575

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 2    VLPPRPHSRAPDPRTLTPPHAIP 70
            V PP PH  +P P   TPP  +P
Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMP 1062

>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 4   APAPSTLASSRSPNPDPPACHPTSPLARSP 93
           APAPS+  ++R+P+    A  P  P   SP
Sbjct: 192 APAPSSAPAARAPSSPSSAPRPARPAGASP 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.123    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,335,457
Number of Sequences: 219361
Number of extensions: 360428
Number of successful extensions: 2045
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)