ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK072095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 4e-34
2dbj|AK073497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 9e-32
3gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome... 80 5e-12
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
5gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 46 0.065
6gb|BT014501.1| Lycopersicon esculentum clone 133872F, mRNA sequence 40 4.0
7emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chr... 40 4.0

>dbj|AK072095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116C18, full
           insert sequence
          Length = 2781

 Score =  153 bits (77), Expect = 4e-34
 Identities = 197/237 (83%)
 Strand = Plus / Plus

                                                                       
Query: 68  atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagccagggctggacatctgg 127
           ||||||||||||||||| |  ||||||||||||||||||||||| || |||||||| |||
Sbjct: 140 atgaagggcgtcgacgatgcattcctcggcgtcggcgacaagccgggactggacatttgg 199

                                                                       
Query: 128 tgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgcaagttctacact 187
           || |||||||| | |||| || || |||||| |||||| |||||| ||||||||||||||
Sbjct: 200 tgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggcaagttctacact 259

                                                                       
Query: 188 gggaactgctatatcatactccatacagctgaagtcaagagcggaactcgagggcataat 247
           ||||||  ||| ||||||||   ||| | |||  | || ||||||  |||   ||| |||
Sbjct: 260 gggaacacctacatcatactaagtaccgttgagcttaaaagcggagttcgccagcacaat 319

                                                                    
Query: 248 gtgcattactggataggggatgaggccaaagaggaagattgtttgatggcctctgac 304
           ||||| |||||| ||||||| || ||||||||||| |||||| ||| ||||||||||
Sbjct: 320 gtgcactactgggtaggggaggaagccaaagaggaggattgtctgacggcctctgac 376



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>dbj|AK073497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045E20, full
           insert sequence
          Length = 3074

 Score =  145 bits (73), Expect = 9e-32
 Identities = 196/237 (82%)
 Strand = Plus / Plus

                                                                       
Query: 68  atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagccagggctggacatctgg 127
           ||||||||||||||||| |  ||||| ||||||||||||||||| || |||||||| |||
Sbjct: 278 atgaagggcgtcgacgatgcattcctgggcgtcggcgacaagccgggactggacatttgg 337

                                                                       
Query: 128 tgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgcaagttctacact 187
           || |||||||| | |||| || || |||||| |||||| |||||| ||||||||||||||
Sbjct: 338 tgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggcaagttctacact 397

                                                                       
Query: 188 gggaactgctatatcatactccatacagctgaagtcaagagcggaactcgagggcataat 247
           ||||||  ||| ||||||||   ||| | |||  | || ||||||  |||   ||| |||
Sbjct: 398 gggaacacctacatcatactaagtaccgttgagcttaaaagcggagttcgccagcacaat 457

                                                                    
Query: 248 gtgcattactggataggggatgaggccaaagaggaagattgtttgatggcctctgac 304
           ||||| |||||| ||||||| || ||||||||||| |||||| ||| ||||||||||
Sbjct: 458 gtgcactactgggtaggggaggaagccaaagaggaggattgtctgacggcctctgac 514



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>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0072C16, complete sequence
          Length = 159525

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                         
Query: 116   ctggacatctggtgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgc 175
             |||||||| ||||| |||||||| | |||| || || |||||| |||||| |||||| ||
Sbjct: 85384 ctggacatttggtgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggc 85443

                                             
Query: 176   aagttctacactgggaactgctatatcatact 207
             ||||||||||||||||||  ||| ||||||||
Sbjct: 85444 aagttctacactgggaacacctacatcatact 85475



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 68    atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagcc 111
             ||||||||||||||||| |  |||||||||||||||||||||||
Sbjct: 84828 atgaagggcgtcgacgatgcattcctcggcgtcggcgacaagcc 84871



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                           
Query: 116     ctggacatctggtgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgc 175
               |||||||| ||||| |||||||| | |||| || || |||||| |||||| |||||| ||
Sbjct: 2991368 ctggacatttggtgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggc 2991427

                                               
Query: 176     aagttctacactgggaactgctatatcatact 207
               ||||||||||||||||||  ||| ||||||||
Sbjct: 2991428 aagttctacactgggaacacctacatcatact 2991459



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                           
Query: 68      atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagcc 111
               ||||||||||||||||| |  |||||||||||||||||||||||
Sbjct: 2990812 atgaagggcgtcgacgatgcattcctcggcgtcggcgacaagcc 2990855



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 70      gaagggcgtcgacgacgagttcctcggcgtcggcg 104
               ||||||| |||||| || |||||||||||||||||
Sbjct: 3162192 gaagggcttcgacgccgtgttcctcggcgtcggcg 3162158



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>gb|BT014501.1| Lycopersicon esculentum clone 133872F, mRNA sequence
          Length = 1245

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 79  cgacgacgagttcctcggcgtcgg 102
           ||||||||||||| ||||||||||
Sbjct: 539 cgacgacgagttcgtcggcgtcgg 516



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>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the
              5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase,
              the 3' end of a novel gene and a CpG island, complete
              sequence
          Length = 193914

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ttctacactgggaactgcta 198
              ||||||||||||||||||||
Sbjct: 165466 ttctacactgggaactgcta 165447


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,232,620
Number of Sequences: 3902068
Number of extensions: 2232620
Number of successful extensions: 43607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43522
Number of HSP's gapped (non-prelim): 85
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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