Clone Name | bastl13a12 |
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Clone Library Name | barley_pub |
>dbj|AK072095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116C18, full insert sequence Length = 2781 Score = 153 bits (77), Expect = 4e-34 Identities = 197/237 (83%) Strand = Plus / Plus Query: 68 atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagccagggctggacatctgg 127 ||||||||||||||||| | ||||||||||||||||||||||| || |||||||| ||| Sbjct: 140 atgaagggcgtcgacgatgcattcctcggcgtcggcgacaagccgggactggacatttgg 199 Query: 128 tgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgcaagttctacact 187 || |||||||| | |||| || || |||||| |||||| |||||| |||||||||||||| Sbjct: 200 tgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggcaagttctacact 259 Query: 188 gggaactgctatatcatactccatacagctgaagtcaagagcggaactcgagggcataat 247 |||||| ||| |||||||| ||| | ||| | || |||||| ||| ||| ||| Sbjct: 260 gggaacacctacatcatactaagtaccgttgagcttaaaagcggagttcgccagcacaat 319 Query: 248 gtgcattactggataggggatgaggccaaagaggaagattgtttgatggcctctgac 304 ||||| |||||| ||||||| || ||||||||||| |||||| ||| |||||||||| Sbjct: 320 gtgcactactgggtaggggaggaagccaaagaggaggattgtctgacggcctctgac 376
>dbj|AK073497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045E20, full insert sequence Length = 3074 Score = 145 bits (73), Expect = 9e-32 Identities = 196/237 (82%) Strand = Plus / Plus Query: 68 atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagccagggctggacatctgg 127 ||||||||||||||||| | ||||| ||||||||||||||||| || |||||||| ||| Sbjct: 278 atgaagggcgtcgacgatgcattcctgggcgtcggcgacaagccgggactggacatttgg 337 Query: 128 tgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgcaagttctacact 187 || |||||||| | |||| || || |||||| |||||| |||||| |||||||||||||| Sbjct: 338 tgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggcaagttctacact 397 Query: 188 gggaactgctatatcatactccatacagctgaagtcaagagcggaactcgagggcataat 247 |||||| ||| |||||||| ||| | ||| | || |||||| ||| ||| ||| Sbjct: 398 gggaacacctacatcatactaagtaccgttgagcttaaaagcggagttcgccagcacaat 457 Query: 248 gtgcattactggataggggatgaggccaaagaggaagattgtttgatggcctctgac 304 ||||| |||||| ||||||| || ||||||||||| |||||| ||| |||||||||| Sbjct: 458 gtgcactactgggtaggggaggaagccaaagaggaggattgtctgacggcctctgac 514
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 79.8 bits (40), Expect = 5e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 116 ctggacatctggtgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgc 175 |||||||| ||||| |||||||| | |||| || || |||||| |||||| |||||| || Sbjct: 85384 ctggacatttggtgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggc 85443 Query: 176 aagttctacactgggaactgctatatcatact 207 |||||||||||||||||| ||| |||||||| Sbjct: 85444 aagttctacactgggaacacctacatcatact 85475 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 68 atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagcc 111 ||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 84828 atgaagggcgtcgacgatgcattcctcggcgtcggcgacaagcc 84871
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 5e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 116 ctggacatctggtgtattatgggcaccaatgtagttccaattgcaaaatccttgcatcgc 175 |||||||| ||||| |||||||| | |||| || || |||||| |||||| |||||| || Sbjct: 2991368 ctggacatttggtgcattatgggtagcaatctaattgcaattgaaaaatcattgcatggc 2991427 Query: 176 aagttctacactgggaactgctatatcatact 207 |||||||||||||||||| ||| |||||||| Sbjct: 2991428 aagttctacactgggaacacctacatcatact 2991459 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 68 atgaagggcgtcgacgacgagttcctcggcgtcggcgacaagcc 111 ||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 2990812 atgaagggcgtcgacgatgcattcctcggcgtcggcgacaagcc 2990855
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.065 Identities = 32/35 (91%) Strand = Plus / Minus Query: 70 gaagggcgtcgacgacgagttcctcggcgtcggcg 104 ||||||| |||||| || ||||||||||||||||| Sbjct: 3162192 gaagggcttcgacgccgtgttcctcggcgtcggcg 3162158
>gb|BT014501.1| Lycopersicon esculentum clone 133872F, mRNA sequence Length = 1245 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 cgacgacgagttcctcggcgtcgg 102 ||||||||||||| |||||||||| Sbjct: 539 cgacgacgagttcgtcggcgtcgg 516
>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the 5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase, the 3' end of a novel gene and a CpG island, complete sequence Length = 193914 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ttctacactgggaactgcta 198 |||||||||||||||||||| Sbjct: 165466 ttctacactgggaactgcta 165447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,232,620 Number of Sequences: 3902068 Number of extensions: 2232620 Number of successful extensions: 43607 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43522 Number of HSP's gapped (non-prelim): 85 length of query: 304 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 282 effective length of database: 17,147,199,772 effective search space: 4835510335704 effective search space used: 4835510335704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)