>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)|
          Length = 142

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -1

Query: 162 GERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE 52
           G R   WS     R   W    +AR  GRC  L D E
Sbjct: 84  GSRSWRWSDGTAPRFASWHRTAKARRGGRCAALRDEE 120

>BCSC_SALTY (Q8ZLB8) Cellulose synthase operon protein C|
          Length = 1143

 Score = 26.6 bits (57), Expect(2) = 2.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 177 KRALMGERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE 52
           +R L  + G  W ++ +SR  LW AG+ A+AD +   L+  +
Sbjct: 471 RRRLALDPGSVWVTYRLSR-DLWQAGQHAQADAQMRSLAQQK 511



 Score = 21.6 bits (44), Expect(2) = 2.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 311 GRWCRAAESHR 279
           G+W +AAE HR
Sbjct: 461 GKWAQAAELHR 471

>TRUA_PHOPR (Q6LNU5) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 261

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 204 LLRLVGSGVKRALMGERGREWSSWLVSRAPLWLAGERARADG 79
           ++R +   + R   G+   EW  W++ +    +AGE A+A G
Sbjct: 194 MVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAG 235

>TRUA_VIBVY (Q7M7J4) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 162 GERGREWSSWLVSRAPLWLAGERARADG 79
           GE+  EW  WL+      LAG  A+A+G
Sbjct: 208 GEQDPEWIKWLLEAKDRKLAGPTAKAEG 235

>TRUA_VIBVU (Q8CWK3) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 162 GERGREWSSWLVSRAPLWLAGERARADG 79
           GE+  EW  WL+      LAG  A+A+G
Sbjct: 208 GEQDPEWIKWLLEAKDRKLAGPTAKAEG 235

>TRUA_VIBPA (Q87MP1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 204 LLRLVGSGVKRALMGERGREWSSWLVSRAPLWLAGERARADG 79
           ++R +   + +   GE   EW  WL+      LAG  A+A+G
Sbjct: 194 MVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEG 235

>AROC_PROAC (Q6A8I4) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 398

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -3

Query: 232 AYGVRSSRGAVATGGQRSEARLNG-----RAREGVEFLVGF 125
           AYG+ +  G+ + G +R +ARL G     +A +GVEF  GF
Sbjct: 227 AYGLPAGLGSHSQGDRRLDARLAGALMGIQAIKGVEFGDGF 267

>ISPD_GEOSL (Q746Z9) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 232

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 229 YGVRSSRGAVATGGQRSEARLNG-RAREG 146
           YG    RG VA G +R  + LNG RA EG
Sbjct: 69  YGFTKVRGIVAGGAERQHSVLNGLRAMEG 97

>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2|
          Length = 989

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 119 ARETNQELHSLPRSPIKARFTPLPTSRNSATR 214
           A +  +E    PRSP   RFTP+   R  A R
Sbjct: 317 APKAREERSESPRSPAPRRFTPVSPPRREAPR 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,888,728
Number of Sequences: 219361
Number of extensions: 571969
Number of successful extensions: 1779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)