Clone Name | bastl13a02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... | 28 | 5.7 | 2 | SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... | 28 | 5.7 | 3 | SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... | 28 | 5.7 | 4 | ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497 | 28 | 7.4 | 5 | ZN587_HUMAN (Q96SQ5) Zinc finger protein 587 | 27 | 9.7 | 6 | SXL_MUSDO (O17310) Sex-lethal homolog | 27 | 9.7 |
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>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -2 Query: 175 PSPC-SLGNPSLKRRKAIFDTWSKXXXXXXXXAGSGWISEVDPL 47 P+ C + G+P LKR + +FDTW GW E + L Sbjct: 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL--GWPEETEDL 476
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -2 Query: 175 PSPC-SLGNPSLKRRKAIFDTWSKXXXXXXXXAGSGWISEVDPL 47 P+ C + G+P LKR + +FDTW GW E + L Sbjct: 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL--GWPEETEDL 476
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -2 Query: 175 PSPC-SLGNPSLKRRKAIFDTWSKXXXXXXXXAGSGWISEVDPL 47 P+ C + G+P LKR + +FDTW GW E + L Sbjct: 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL--GWPEETEDL 476
>ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497| Length = 498 Score = 27.7 bits (60), Expect = 7.4 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +2 Query: 41 QEQRIHFGDP---ARPGGAAFLL---LLLRPSIEDCLSPLQRGVPQGTRTRATALI*QRR 202 Q QRIH G+ R G AF L+ L P + + R+T L+ RR Sbjct: 151 QHQRIHSGEKPYACRECGKAFRAQSQLIHHQETHSGLKPFRCPDCGKSFGRSTTLVQHRR 210 Query: 203 VHTGQEQGPIPCC 241 HTG++ P C Sbjct: 211 THTGEKPYECPEC 223
>ZN587_HUMAN (Q96SQ5) Zinc finger protein 587| Length = 575 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 170 TRATALI*QRRVHTGQEQGPIPCCHYIVQSLSARGQLV 283 +R ++LI +RVHTGQ P C +S S +G L+ Sbjct: 278 SRKSSLIQHQRVHTGQTAYP---CEECGKSFSQKGSLI 312
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +2 Query: 74 RPGGAAFLLLLLRPSIEDCLSPLQRGVPQGTRTRATALI*QRRVHTGQEQGPIPCCHYIV 253 RP G AF+ R ++ +S L +P+G T V +E G + H++ Sbjct: 227 RPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLT-------VRLAEEHGKMKAHHFMN 279 Query: 254 Q 256 Q Sbjct: 280 Q 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.127 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,859,297 Number of Sequences: 219361 Number of extensions: 853381 Number of successful extensions: 1397 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1396 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)