ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl13a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 5.7
2SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 5.7
3SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 5.7
4ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497 28 7.4
5ZN587_HUMAN (Q96SQ5) Zinc finger protein 587 27 9.7
6SXL_MUSDO (O17310) Sex-lethal homolog 27 9.7

>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 862

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 175 PSPC-SLGNPSLKRRKAIFDTWSKXXXXXXXXAGSGWISEVDPL 47
           P+ C + G+P LKR + +FDTW             GW  E + L
Sbjct: 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL--GWPEETEDL 476



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>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 862

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 175 PSPC-SLGNPSLKRRKAIFDTWSKXXXXXXXXAGSGWISEVDPL 47
           P+ C + G+P LKR + +FDTW             GW  E + L
Sbjct: 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL--GWPEETEDL 476



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>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 862

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 175 PSPC-SLGNPSLKRRKAIFDTWSKXXXXXXXXAGSGWISEVDPL 47
           P+ C + G+P LKR + +FDTW             GW  E + L
Sbjct: 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL--GWPEETEDL 476



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>ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497|
          Length = 498

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = +2

Query: 41  QEQRIHFGDP---ARPGGAAFLL---LLLRPSIEDCLSPLQRGVPQGTRTRATALI*QRR 202
           Q QRIH G+     R  G AF     L+        L P +      +  R+T L+  RR
Sbjct: 151 QHQRIHSGEKPYACRECGKAFRAQSQLIHHQETHSGLKPFRCPDCGKSFGRSTTLVQHRR 210

Query: 203 VHTGQEQGPIPCC 241
            HTG++    P C
Sbjct: 211 THTGEKPYECPEC 223



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>ZN587_HUMAN (Q96SQ5) Zinc finger protein 587|
          Length = 575

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 170 TRATALI*QRRVHTGQEQGPIPCCHYIVQSLSARGQLV 283
           +R ++LI  +RVHTGQ   P   C    +S S +G L+
Sbjct: 278 SRKSSLIQHQRVHTGQTAYP---CEECGKSFSQKGSLI 312



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>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 74  RPGGAAFLLLLLRPSIEDCLSPLQRGVPQGTRTRATALI*QRRVHTGQEQGPIPCCHYIV 253
           RP G AF+    R   ++ +S L   +P+G     T       V   +E G +   H++ 
Sbjct: 227 RPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLT-------VRLAEEHGKMKAHHFMN 279

Query: 254 Q 256
           Q
Sbjct: 280 Q 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.127    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,859,297
Number of Sequences: 219361
Number of extensions: 853381
Number of successful extensions: 1397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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