>TRUA_STRR6 (Q8CWQ1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 249

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 292 TDHKAALKINYFIFPGSKEQTCARSHLSSRPRTLTRINK 176
           T +KA +  + + F G + Q+ ARS      +TLTR+NK
Sbjct: 2   TRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK 40

>TRUA_STRPN (Q97PL0) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 249

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 292 TDHKAALKINYFIFPGSKEQTCARSHLSSRPRTLTRINK 176
           T +KA +  + + F G + Q  ARS      +TLTR+NK
Sbjct: 2   TRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK 40

>SUVH2_ARATH (O22781) Histone-lysine N-methyltransferase, H3 lysine-9, H3|
           lysine-27, H4 lysine-20 and cytosine specific SUVH2 (EC
           2.1.1.43) (Histone H3-K9 methyltransferase 2)
           (H3-K9-HMTase 2) (H3-K27-HMTase 2) (H4-K20-HMTase 2)
           (Cytosine-HMTase 2) (Suppr
          Length = 651

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 156 PRFEKKTLLIRVSVLGREER*DLAQV 233
           P+FE+   L R+++LG E+R +L QV
Sbjct: 126 PKFERPRELARIAILGHEQRKELRQV 151

>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 195  HLLGSIKSSSQIAARRGKSGASATKDSRTGEAGGDSWGI 79
            H LG  +  SQ+AAR+ K     TK      A G +WG+
Sbjct: 1433 HALGEWEQLSQLAARKWKVSKLQTKKLIAPLAAGAAWGL 1471

>RPOB_NEPOL (Q9TL06) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1109

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +1

Query: 67  RFDLDPPAIPTCLSRPRILRRRGAAFTSSCRDL 165
           R  LDP   PT   RP ILR R    T S RD+
Sbjct: 511 RDPLDPAVRPTLPDRPLILRSRQEFHTGSFRDV 543

>FL2_TOBAC (Q40505) Floricaula/leafy homolog 2 (NFL2)|
          Length = 416

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 159 AARRGKSGASATKDSRTGEAGGDSWGIKIEPGNL 58
           A R  + GASA +D  T E   D W I    G +
Sbjct: 200 AGREKRGGASAEEDEETEEGQEDDWNINDASGGI 233

>HUTU_DEIRA (Q9RZ02) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 558

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 204 AQEHLLGSIKSSSQIAARRGKSGASATKDSRTGEAGGDSWGIKIEPGNLRR 52
           AQ+H  GS+K +  + A  G  G    +      AGG S  I+I+P  +R+
Sbjct: 154 AQKHFGGSLKGTITVTA--GLGGMGGAQPLAVKLAGGVSITIEIDPTRIRK 202

>HHAT_HUMAN (Q5VTY9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)|
           (Hedgehog acyltransferase) (Skinny hedgehog protein 1)
           (Melanoma antigen recognized by T-cells 2) (MART-2)
          Length = 493

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 34  LVISGFPSQIPRFD-LDPPAIPTCLS 108
           LV+ G P+ + R D L PPA+P C+S
Sbjct: 301 LVLFGVPALLMRLDGLTPPALPRCVS 326

>CYAA_USTMA (P49606) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
            (Adenylyl cyclase)
          Length = 2493

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 174  SSSQIAARRGKSGASATKDSRTGEAGGD 91
            +S+ IAAR+G + +S T  S TG A G+
Sbjct: 1467 TSAVIAARKGSTSSSLTHRSNTGGANGN 1494

>NO551_SOYBN (Q05544) Early nodulin 55-1 (N-55-1) (Fragment)|
          Length = 137

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 196 FLGGKKGEILHRFVLSILEK*NN*SSTPLYDPSPYHPSLSPSCQPS 333
           F+ G +        L ++   NN     ++ PSP  PS SPS  PS
Sbjct: 47  FISGNQSHCQMGLKLMVVVMSNNTKKKLIHSPSPSSPSPSPSPSPS 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,412,886
Number of Sequences: 219361
Number of extensions: 798648
Number of successful extensions: 2340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)