>LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 885

 Score =  136 bits (342), Expect = 1e-32
 Identities = 66/74 (89%), Positives = 70/74 (94%)
 Frame = +3

Query: 144 PVELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEA 323
           PVELP RLA+LPFRNKVLLPGAIVRIRCT PSSVKLVEQELWQ+E+KGLIGVLPVRDSEA
Sbjct: 5   PVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64

Query: 324 AAVGSILSPGVGGD 365
            AVGS+LSPGVG D
Sbjct: 65  TAVGSLLSPGVGSD 78

>LONH1_ARATH (O64948) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 888

 Score =  114 bits (285), Expect = 6e-26
 Identities = 54/74 (72%), Positives = 67/74 (90%), Gaps = 1/74 (1%)
 Frame = +3

Query: 147 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVR-DSEA 323
           VELP RLAILPFRNKVLLPGAI+RIRCT+ SSV LVEQELWQ+E+KGLIG+LPVR D+E 
Sbjct: 5   VELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEG 64

Query: 324 AAVGSILSPGVGGD 365
           +++G++++PG G D
Sbjct: 65  SSIGTMINPGAGSD 78

>LONH1_SPIOL (O04979) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 875

 Score =  114 bits (284), Expect = 8e-26
 Identities = 57/74 (77%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
 Frame = +3

Query: 147 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRD-SEA 323
           VELP RL IL FRNKVLLPGAI+RIRCT+PSSVKLVEQELWQRE+KGLIG++PVRD SE+
Sbjct: 5   VELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASES 64

Query: 324 AAVGSILSPGVGGD 365
           A+V  +L PG G D
Sbjct: 65  ASVAPVLYPGGGTD 78

>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)|
          Length = 826

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 150 ELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEAAA 329
           ++P  L ILP RN V  PG ++ +      ++ L++  +    D  +IGV+  R +E   
Sbjct: 27  DIPQVLPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAV---RDDQVIGVVTQRRAEEED 83

Query: 330 VGS 338
            G+
Sbjct: 84  PGA 86

>HV1D_HUMAN (P01760) Ig heavy chain V-I region WOL|
          Length = 124

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 189 KVLLPGAIVRIRCTTPSSVKLVEQELWQRE--DKGL--IGVLPVR-DSEAAAVGSILSPG 353
           +V  PG+ VR+ C T     +  + LW R+   KGL  +G +P+R + E    GS++   
Sbjct: 10  EVKKPGSSVRVSCKTSGGTFVDYKGLWVRQAPGKGLEWVGQIPLRFNGEVKNPGSVVRVS 69

Query: 354 V 356
           V
Sbjct: 70  V 70

>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 357 PLQATGSNQQPQPQSPAREAPQ 292
           P    GSNQQP+ Q+P ++ PQ
Sbjct: 124 PYNQGGSNQQPRQQAPRQQRPQ 145

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 360 RPLQATGSNQQPQPQSPAREAPQ 292
           +P Q T +  QPQP +PA+  PQ
Sbjct: 436 QPQQPTPAKPQPQPPTPAKPQPQ 458

>ANIA_NEIMB (Q9JYE1) Copper-containing nitrite reductase precursor (EC 1.7.2.1)|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 207 AIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSE 320
           AIV  +   P S  LV+  +++  +KG +G L V  +E
Sbjct: 312 AIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAE 349

>ANIA_NEIMA (Q9JTB8) Copper-containing nitrite reductase precursor (EC 1.7.2.1)|
          Length = 386

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 207 AIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSE 320
           AIV  +   P S  LV+  +++  +KG +G L V  +E
Sbjct: 308 AIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAE 345

>ANIA_NEIGO (Q02219) Copper-containing nitrite reductase precursor (EC 1.7.2.1)|
           (Major outer membrane protein Pan 1)
          Length = 392

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 207 AIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSE 320
           AIV  +   P S  LV+  +++  +KG +G L V  +E
Sbjct: 312 AIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAE 349

>RNZ_CHLPN (Q9Z9F6) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 307

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 222 RCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEAAAVGS 338
           R T P ++K + +EL  R  +GLI    +RD E +  GS
Sbjct: 149 RITEPDTIKFLPKELESRGIRGLIIQDLIRDQEISIGGS 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,435,319
Number of Sequences: 219361
Number of extensions: 705685
Number of successful extensions: 2434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2429
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)