ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF542966.1| Triticum aestivum lon protease-like mRNA, partial... 392 e-106
2gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds 389 e-105
3gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA... 299 3e-78
4gb|DQ002905.1| Oryza sativa (indica cultivar-group) lon protease... 250 3e-63
5gb|AY129070.1| Oryza sativa (indica cultivar-group) Lon protease... 250 3e-63
6gb|AY109454.1| Zea mays CL1713_1 mRNA sequence 192 5e-46
7gb|U85494.1|ZMU85494 Zea mays LON1 protease (LON1) mRNA, complet... 192 5e-46
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
9dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
10dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
11gb|AC139621.4| Artibeus jamaicensis clone 47H5, complete sequence 44 0.31
12gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold 44 0.31
13gb|AC007889.9| Drosophila melanogaster clone BACR48E12, complete... 42 1.2
14gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete... 42 1.2
15gb|BT025228.1| Drosophila melanogaster FI01013 full insert cDNA 42 1.2
16ref|NM_141889.2| Drosophila melanogaster Spt3 CG3169-RA (Spt3), ... 42 1.2
17gb|AY142215.1| Drosophila melanogaster suppressor of Ty 3 mRNA, ... 42 1.2
18gb|BT024200.1| Drosophila melanogaster RE50415 full insert cDNA 42 1.2
19gb|AE003694.4| Drosophila melanogaster chromosome 3R, section 32... 42 1.2
20dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.2
21ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
22gb|AY430948.1| Uncultured prokaryote clone 828-2 AclB (aclB) gen... 40 4.9
23gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 4.9
24gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 4.9
25gb|AY321492.1| Pseudomonas putida copABCD operon, complete sequence 40 4.9
26gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.9
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
28dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
29dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
30emb|AL845261.17| Mouse DNA sequence from clone RP23-174C9 on chr... 40 4.9
31gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, com... 40 4.9
32emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chrom... 40 4.9 
>gb|AF542966.1| Triticum aestivum lon protease-like mRNA, partial sequence
          Length = 742

 Score =  392 bits (198), Expect = e-106
 Identities = 231/242 (95%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgc 185
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 58  gcggccatggcggacgcgccggtggagctgccgggccggctcgccatactgccgttccgc 117

                                                                       
Query: 186 aacaaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtgtc 245
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 118 aacaaggtgctcctcccgggcgccatcgtgcggatccgatgcaccaaccccagcagtgtc 177

                                                                       
Query: 246 aagctggtggagcaggagctctggcagagggaggacaagggtctgattggggtgcttccc 305
           |||||||||||||||||||||||||| |||||||||||||||||||| || || ||||| 
Sbjct: 178 aagctggtggagcaggagctctggcaaagggaggacaagggtctgatcggagttcttcct 237

                                                                       
Query: 306 gtgcgggactctgaggctgcggctgttggttcgatcctgtcgcctggagtgggcggtgat 365
           ||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct: 238 gtgcgggactcggaggctgcagctgttggttcgatcctgtcgcctggcgtgggcagtgat 297

             
Query: 366 tc 367
           ||
Sbjct: 298 tc 299
to top
>gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds
          Length = 3143

 Score =  389 bits (196), Expect = e-105
 Identities = 232/244 (95%)
 Strand = Plus / Plus

                                                                       
Query: 124 cggcggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttcc 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 48  cggcggccatggcggacgcgccggtggagctgccgggccggctcgccatactgccgttcc 107

                                                                       
Query: 184 gcaacaaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtg 243
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 108 gcaacaaggtgctcctcccgggcgccatcgtgcggatccgatgcacctaccccagcagtg 167

                                                                       
Query: 244 tcaagctggtggagcaggagctctggcagagggaggacaagggtctgattggggtgcttc 303
           | ||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct: 168 taaagctggtggagcaggagctctggcagagggaggacaggggtctgatcggagtgcttc 227

                                                                       
Query: 304 ccgtgcgggactctgaggctgcggctgttggttcgatcctgtcgcctggagtgggcggtg 363
           | ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 228 cggtgcgggactccgaggctgcggctgttggttccatcctgtcgcctggcgtgggcagtg 287

               
Query: 364 attc 367
           ||||
Sbjct: 288 attc 291
to top
>gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA, complete cds
          Length = 3207

 Score =  299 bits (151), Expect = 3e-78
 Identities = 217/239 (90%)
 Strand = Plus / Plus

                                                                       
Query: 129 gccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaac 188
           |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20  gccatggcggactcgcctgtggagctgccgggccggctcgccatactgccgttccgcaac 79

                                                                       
Query: 189 aaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtgtcaag 248
           ||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| |||
Sbjct: 80  aaggtgctcctgccgggcgccatcgtacggatccgctgcaccaaccccagcagtgtgaag 139

                                                                       
Query: 249 ctggtggagcaggagctctggcagagggaggacaagggtctgattggggtgcttcccgtg 308
           ||||||||||| ||||||||||||| |||||| ||||| ||||||||||| ||||| |||
Sbjct: 140 ctggtggagcaagagctctggcagaaggaggagaagggcctgattggggtacttcctgtg 199

                                                                      
Query: 309 cgggactctgaggctgcggctgttggttcgatcctgtcgcctggagtgggcggtgattc 367
           |||||||| |||||||| |||||||||||  | ||||| ||||| |||||| |||||||
Sbjct: 200 cgggactcagaggctgcagctgttggttcattgctgtctcctggtgtgggcagtgattc 258
to top
>gb|DQ002905.1| Oryza sativa (indica cultivar-group) lon protease lon1a (lon1)
           mRNA, complete sequence, alternatively spliced
          Length = 2986

 Score =  250 bits (126), Expect = 3e-63
 Identities = 162/174 (93%)
 Strand = Plus / Plus

                                                                       
Query: 128 ggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaa 187
           |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 110 ggccatggcggacgcggcggtggagctgcctggacggctcgcgatactgccgttccgcaa 169

                                                                       
Query: 188 caaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtgtcaa 247
           |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||
Sbjct: 170 caaggtgctcctcccgggggccatcgtgcggatccgctgcaccaaccccagcagtgtgaa 229

                                                                 
Query: 248 gctggtggagcaggagctctggcagagggaggacaagggtctgattggggtgct 301
           ||| ||||||||||||||||||||  ||||||| ||||||||||| ||||||||
Sbjct: 230 gcttgtggagcaggagctctggcaacgggaggagaagggtctgatcggggtgct 283
to top
>gb|AY129070.1| Oryza sativa (indica cultivar-group) Lon protease (Lon1) mRNA,
           complete cds
          Length = 2908

 Score =  250 bits (126), Expect = 3e-63
 Identities = 162/174 (93%)
 Strand = Plus / Plus

                                                                       
Query: 128 ggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaa 187
           |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 110 ggccatggcggacgcggcggtggagctgcctggacggctcgcgatactgccgttccgcaa 169

                                                                       
Query: 188 caaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtgtcaa 247
           |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||
Sbjct: 170 caaggtgctcctcccgggggccatcgtgcggatccgctgcaccaaccccagcagtgtgaa 229

                                                                 
Query: 248 gctggtggagcaggagctctggcagagggaggacaagggtctgattggggtgct 301
           ||| ||||||||||||||||||||  ||||||| ||||||||||| ||||||||
Sbjct: 230 gcttgtggagcaggagctctggcaacgggaggagaagggtctgatcggggtgct 283
to top
>gb|AY109454.1| Zea mays CL1713_1 mRNA sequence
          Length = 3184

 Score =  192 bits (97), Expect = 5e-46
 Identities = 202/237 (85%)
 Strand = Plus / Plus

                                                                       
Query: 131 catggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaacaa 190
           |||| ||||| ||||||||||||||||| | ||||||||| ||||||| |||||||||||
Sbjct: 123 catgtcggactcgccggtggagctgccgagccggctcgccgtactgcccttccgcaacaa 182

                                                                       
Query: 191 ggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtgtcaagct 250
           |||||| ||||| || |||||||||||||| || ||||||| |||||| ||||| |||||
Sbjct: 183 ggtgctgctccccggtgccatcgtgcggattcgctgcaccaaccccagtagtgtgaagct 242

                                                                       
Query: 251 ggtggagcaggagctctggcagagggaggacaagggtctgattggggtgcttcccgtgcg 310
           ||||||||| || |||||||||| ||| || || || ||||| ||||| ||||| |||||
Sbjct: 243 ggtggagcaagaactctggcagaaggaagagaaaggcctgatcggggtacttcctgtgcg 302

                                                                    
Query: 311 ggactctgaggctgcggctgttggttcgatcctgtcgcctggagtgggcggtgattc 367
           |||||| |||||  | |||||||| ||  | ||||| ||||| |||||| |||||||
Sbjct: 303 ggactcggaggcaacagctgttggctctttgctgtctcctggtgtgggcagtgattc 359
to top
>gb|U85494.1|ZMU85494 Zea mays LON1 protease (LON1) mRNA, complete cds
          Length = 3217

 Score =  192 bits (97), Expect = 5e-46
 Identities = 202/237 (85%)
 Strand = Plus / Plus

                                                                       
Query: 131 catggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaacaa 190
           |||| ||||| ||||||||||||||||| | ||||||||| ||||||| |||||||||||
Sbjct: 123 catgtcggactcgccggtggagctgccgagccggctcgccgtactgcccttccgcaacaa 182

                                                                       
Query: 191 ggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcagtgtcaagct 250
           |||||| ||||| || |||||||||||||| || ||||||| |||||| ||||| |||||
Sbjct: 183 ggtgctgctccccggtgccatcgtgcggattcgctgcaccaaccccagtagtgtgaagct 242

                                                                       
Query: 251 ggtggagcaggagctctggcagagggaggacaagggtctgattggggtgcttcccgtgcg 310
           ||||||||| || |||||||||| ||| || || || ||||| ||||| ||||| |||||
Sbjct: 243 ggtggagcaagaactctggcagaaggaagagaaaggcctgatcggggtacttcctgtgcg 302

                                                                    
Query: 311 ggactctgaggctgcggctgttggttcgatcctgtcgcctggagtgggcggtgattc 367
           |||||| |||||  | |||||||| ||  | ||||| ||||| |||||| |||||||
Sbjct: 303 ggactcggaggcaacagctgttggctctttgctgtctcctggtgtgggcagtgattc 359
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  178 bits (90), Expect = 8e-42
 Identities = 108/114 (94%)
 Strand = Plus / Minus

                                                                            
Query: 128      ggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaa 187
                |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 20651375 ggccatggcggacgcggcggtggagctgcctggacggctcgcgatactgccgttccgcaa 20651316

                                                                      
Query: 188      caaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcag 241
                |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 20651315 caaggtgctcctcccgggggccatcgtgcggatccgctgcaccaaccccagcag 20651262



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 238      gcagtgtcaagctggtggagcaggagctctggcagagggaggacaagggtctgattgggg 297
                ||||||| ||||| ||||||||||| ||||||||  ||||||| ||||||||||| ||||
Sbjct: 20650558 gcagtgtgaagcttgtggagcaggaactctggcaacgggaggagaagggtctgatcgggg 20650499

                    
Query: 298      tgct 301
                ||||
Sbjct: 20650498 tgct 20650495
to top
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score =  178 bits (90), Expect = 8e-42
 Identities = 108/114 (94%)
 Strand = Plus / Minus

                                                                         
Query: 128   ggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaa 187
             |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 44986 ggccatggcggacgcggcggtggagctgcctggacggctcgcgatactgccgttccgcaa 44927

                                                                   
Query: 188   caaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcag 241
             |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 44926 caaggtgctcctcccgggggccatcgtgcggatccgctgcaccaaccccagcag 44873



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 238   gcagtgtcaagctggtggagcaggagctctggcagagggaggacaagggtctgattgggg 297
             ||||||| ||||| ||||||||||| ||||||||  ||||||| ||||||||||| ||||
Sbjct: 44169 gcagtgtgaagcttgtggagcaggaactctggcaacgggaggagaagggtctgatcgggg 44110

                 
Query: 298   tgct 301
             ||||
Sbjct: 44109 tgct 44106
to top
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0515E01
          Length = 140063

 Score =  178 bits (90), Expect = 8e-42
 Identities = 108/114 (94%)
 Strand = Plus / Minus

                                                                          
Query: 128    ggccatggcggacgcgccggtggagctgccgggacggctcgccatactgccgttccgcaa 187
              |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 117033 ggccatggcggacgcggcggtggagctgcctggacggctcgcgatactgccgttccgcaa 116974

                                                                    
Query: 188    caaggtgctcctcccgggcgccatcgtgcggatccgatgcaccacccccagcag 241
              |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 116973 caaggtgctcctcccgggggccatcgtgcggatccgctgcaccaaccccagcag 116920



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                          
Query: 238    gcagtgtcaagctggtggagcaggagctctggcagagggaggacaagggtctgattgggg 297
              ||||||| ||||| ||||||||||| ||||||||  ||||||| ||||||||||| ||||
Sbjct: 116216 gcagtgtgaagcttgtggagcaggaactctggcaacgggaggagaagggtctgatcgggg 116157

                  
Query: 298    tgct 301
              ||||
Sbjct: 116156 tgct 116153
to top
>gb|AC139621.4| Artibeus jamaicensis clone 47H5, complete sequence
          Length = 103728

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 261   gagctctggcagagggaggaca 282
             ||||||||||||||||||||||
Sbjct: 36338 gagctctggcagagggaggaca 36317
to top
>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold
          Length = 584809

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 261    gagctctggcagagggaggaca 282
              ||||||||||||||||||||||
Sbjct: 207169 gagctctggcagagggaggaca 207148
to top
>gb|AC007889.9| Drosophila melanogaster clone BACR48E12, complete sequence
          Length = 182182

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 240    agtgtcaagctggtggagcag 260
              |||||||||||||||||||||
Sbjct: 113343 agtgtcaagctggtggagcag 113363
to top
>gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete sequence
          Length = 184662

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   agtgtcaagctggtggagcag 260
             |||||||||||||||||||||
Sbjct: 30806 agtgtcaagctggtggagcag 30826
to top
>gb|BT025228.1| Drosophila melanogaster FI01013 full insert cDNA
          Length = 1425

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 240 agtgtcaagctggtggagcag 260
           |||||||||||||||||||||
Sbjct: 435 agtgtcaagctggtggagcag 455
to top
>ref|NM_141889.2| Drosophila melanogaster Spt3 CG3169-RA (Spt3), mRNA
          Length = 1223

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 240 agtgtcaagctggtggagcag 260
           |||||||||||||||||||||
Sbjct: 435 agtgtcaagctggtggagcag 455
to top
>gb|AY142215.1| Drosophila melanogaster suppressor of Ty 3 mRNA, complete cds
          Length = 1281

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 240 agtgtcaagctggtggagcag 260
           |||||||||||||||||||||
Sbjct: 493 agtgtcaagctggtggagcag 513
to top
>gb|BT024200.1| Drosophila melanogaster RE50415 full insert cDNA
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 240 agtgtcaagctggtggagcag 260
           |||||||||||||||||||||
Sbjct: 435 agtgtcaagctggtggagcag 455
to top
>gb|AE003694.4| Drosophila melanogaster chromosome 3R, section 32 of 118 of the
             complete sequence
          Length = 226075

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   agtgtcaagctggtggagcag 260
             |||||||||||||||||||||
Sbjct: 39767 agtgtcaagctggtggagcag 39787
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 136     cggacgcgccggtggagctgccggg 160
               |||||||||||| ||||||||||||
Sbjct: 2183694 cggacgcgccggcggagctgccggg 2183718
to top
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1587

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 124 cggcggccatggcggacgcgccggtgga 151
           ||||||| ||||||| ||||||||||||
Sbjct: 569 cggcggcgatggcgggcgcgccggtgga 596
to top
>gb|AY430948.1| Uncultured prokaryote clone 828-2 AclB (aclB) gene, partial cds
          Length = 333

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 ccgatgcaccacccccagca 240
           ||||||||||||||||||||
Sbjct: 303 ccgatgcaccacccccagca 322
to top
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    cgtcggcggccatggcggacgcgc 144
              |||||||||||||||||| |||||
Sbjct: 691116 cgtcggcggccatggcggccgcgc 691093
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 112     acagcagtgcgtcggcggcc 131
               ||||||||||||||||||||
Sbjct: 3158426 acagcagtgcgtcggcggcc 3158407
to top
>gb|AY321492.1| Pseudomonas putida copABCD operon, complete sequence
          Length = 3865

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  gcgtcggcggccatggcgga 139
            ||||||||||||||||||||
Sbjct: 1771 gcgtcggcggccatggcgga 1752
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 153     ctgccgggacggctcgccat 172
               ||||||||||||||||||||
Sbjct: 2236237 ctgccgggacggctcgccat 2236256
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 124    cggcggccatggcggacgcgccggtgga 151
              ||||||| ||||||| ||||||||||||
Sbjct: 302417 cggcggcgatggcgggcgcgccggtgga 302444
to top
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 124   cggcggccatggcggacgcgccggtgga 151
             ||||||| ||||||| ||||||||||||
Sbjct: 11931 cggcggcgatggcgggcgcgccggtgga 11958
to top
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1300_E01
          Length = 103022

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 124   cggcggccatggcggacgcgccggtgga 151
             ||||||| ||||||| ||||||||||||
Sbjct: 68843 cggcggcgatggcgggcgcgccggtgga 68870
to top
>emb|AL845261.17| Mouse DNA sequence from clone RP23-174C9 on chromosome 2, complete
             sequence
          Length = 182370

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tcccacctctctcaattcct 49
             ||||||||||||||||||||
Sbjct: 52113 tcccacctctctcaattcct 52132
to top
>gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, complete sequence
          Length = 166914

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    ctctggcagagggaggacaa 283
              ||||||||||||||||||||
Sbjct: 155406 ctctggcagagggaggacaa 155425
to top
>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete
             sequence
          Length = 189829

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    cgtctcccacctctctcaattcct 49
             |||||||||||||||||| |||||
Sbjct: 77865 cgtctcccacctctctcatttcct 77842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,775,231
Number of Sequences: 3902068
Number of extensions: 2775231
Number of successful extensions: 61615
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61344
Number of HSP's gapped (non-prelim): 271
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top